Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS22950

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
107,802	-				-0.7
107,803	+				+0.2
107,803	+				+0.6
107,803	+				-0.0
107,804	-				+0.6
107,804	-				+1.2
107,817	+				+1.1
107,818	-				-0.0
107,825	+				-0.6
107,836	+				-1.2
107,836	+				-0.3
107,836	+				-0.8
107,837	-				+0.8
107,872	+				-0.9
107,873	-				-0.8
107,892	-				-1.5
107,912	+		DDA3937_RS23380	0.11	+0.8
107,912	+		DDA3937_RS23380	0.11	-0.0
107,912	+		DDA3937_RS23380	0.11	-1.0
107,912	+		DDA3937_RS23380	0.11	-0.6
107,912	+		DDA3937_RS23380	0.11	+0.5
107,912	+		DDA3937_RS23380	0.11	-2.0
107,912	+				-0.2
107,912	+		DDA3937_RS23380	0.11	+0.8
107,912	+		DDA3937_RS23380	0.11	-0.6
107,912	+		DDA3937_RS23380	0.11	-0.2
107,913	-		DDA3937_RS23380	0.12	-1.7
107,913	-		DDA3937_RS23380	0.12	-1.2
107,913	-		DDA3937_RS23380	0.12	+1.4
107,913	-		DDA3937_RS23380	0.12	-2.7
107,913	-		DDA3937_RS23380	0.12	+0.4
107,913	-		DDA3937_RS23380	0.12	+0.2
107,913	-				+2.2
107,913	-		DDA3937_RS23380	0.12	-0.6
107,913	-		DDA3937_RS23380	0.12	+0.0
107,913	-		DDA3937_RS23380	0.12	-0.4
107,913	-		DDA3937_RS23380	0.12	+0.4
107,914	+		DDA3937_RS23380	0.13	-0.2
107,914	+		DDA3937_RS23380	0.13	-0.7
107,915	-		DDA3937_RS23380	0.13	+2.9
107,915	-		DDA3937_RS23380	0.13	-0.8
107,932	-		DDA3937_RS23380	0.23	-0.1
107,944	+		DDA3937_RS23380	0.30	+0.1
108,011	-		DDA3937_RS23380	0.68	+0.4
108,019	+		DDA3937_RS23380	0.73	-0.7
108,019	+		DDA3937_RS23380	0.73	-1.6
108,020	-		DDA3937_RS23380	0.74	-0.4
108,020	-		DDA3937_RS23380	0.74	-0.1
108,035	+		DDA3937_RS23380	0.82	+0.2
108,045	-		DDA3937_RS23380	0.88	+0.6
108,097	+				+0.7
108,101	+				-0.8
108,156	+				-0.1
108,161	-				+0.6
108,207	+				+0.7
108,233	+				-1.0
108,234	-				+0.0
108,235	+				+1.7
108,235	+				-0.2
108,238	-				-1.8
108,342	+				-0.9
108,342	+				+2.2
108,342	+				-1.2
108,343	-				+0.6
108,372	+				-0.2
108,372	+				+1.8
108,398	+				-0.4
108,401	-				-0.3
108,401	-				+1.8
108,425	-				-2.6
108,452	-				+0.7
108,457	+				-0.3
108,457	+				+4.6
108,457	+				-0.4
108,457	+				-0.2
108,457	+				+0.8
108,457	+				-0.5
108,457	+				+0.0
108,457	+				-0.2
108,458	-				-0.2
108,458	-				-0.1
108,458	-				+0.1
108,458	-				-0.7
108,458	-				+0.4
108,458	-				+0.1
108,458	-				+0.4
108,485	+				-0.3
108,486	-				-0.5
108,521	-				-1.7
108,530	+				-0.4
108,530	+				-0.2
108,530	+				-0.2
108,530	+				-1.9
108,531	-				+1.8
108,566	+				-0.1
108,567	-				+2.4
108,567	-				-2.1
108,576	+				+0.6
108,576	+				-0.5
108,577	-				-1.5
108,577	-				-2.0
108,607	+				-0.5
108,607	+				+0.4
108,607	+				-0.6
108,607	+				+0.1
108,608	-				+0.3
108,639	+				+0.2
108,661	+				+0.6
108,672	+				-0.1
108,673	-				+1.1
108,673	-				-0.4
108,674	+				-0.4
108,704	-				-0.5
108,718	+				+1.1
108,718	+				+0.0
108,719	-				-0.2
108,719	-				-1.6
108,719	-				-0.2
108,719	-				+1.0
108,782	-				-1.2
108,782	-				+1.2
108,782	-				-0.8
108,794	+				+1.4
108,794	+				+0.9
108,860	+		DDA3937_RS22950	0.22	+0.7
108,860	+		DDA3937_RS22950	0.22	+0.8
108,863	+		DDA3937_RS22950	0.23	+0.1
108,863	+		DDA3937_RS22950	0.23	+0.2
108,863	+		DDA3937_RS22950	0.23	-0.7
108,864	-		DDA3937_RS22950	0.23	+0.2
108,866	+		DDA3937_RS22950	0.24	-0.5
108,866	+		DDA3937_RS22950	0.24	+0.4
108,866	+		DDA3937_RS22950	0.24	-0.1
108,866	+		DDA3937_RS22950	0.24	+0.1
108,866	+		DDA3937_RS22950	0.24	-0.9
108,866	+		DDA3937_RS22950	0.24	+0.2
108,866	+		DDA3937_RS22950	0.24	-0.2
108,867	-		DDA3937_RS22950	0.24	+6.2
108,867	-		DDA3937_RS22950	0.24	+4.4
108,867	-		DDA3937_RS22950	0.24	+0.3
108,867	-		DDA3937_RS22950	0.24	+0.3
108,867	-		DDA3937_RS22950	0.24	-2.3
108,867	-		DDA3937_RS22950	0.24	-0.5
108,911	+		DDA3937_RS22950	0.39	-0.1
108,912	-		DDA3937_RS22950	0.40	-0.4
108,926	+		DDA3937_RS22950	0.45	+0.4
108,942	-		DDA3937_RS22950	0.50	-0.6
109,079	+				+0.8
109,079	+				-0.0
109,080	-				+1.1
109,080	-				-0.6
109,080	-				-1.7
109,080	-				-0.8
109,080	-				+2.4
109,080	-				-1.6
109,177	+				-0.2
109,177	+				+0.1
109,178	-				-0.1
109,178	-				+0.6
109,178	-				-0.2
109,178	-				+1.0
109,258	-		DDA3937_RS00460	0.11	-1.0
109,261	+		DDA3937_RS00460	0.11	-1.6
109,261	+		DDA3937_RS00460	0.11	-0.3
109,261	+		DDA3937_RS00460	0.11	+0.2
109,261	+		DDA3937_RS00460	0.11	-0.2
109,351	+		DDA3937_RS00460	0.17	-0.5
109,351	+		DDA3937_RS00460	0.17	-1.5
109,351	+		DDA3937_RS00460	0.17	-1.0
109,351	+		DDA3937_RS00460	0.17	-0.6
109,353	+				+0.2
109,353	+		DDA3937_RS00460	0.17	+0.7
109,353	+		DDA3937_RS00460	0.17	-0.4
109,354	-		DDA3937_RS00460	0.17	-0.8
109,354	-		DDA3937_RS00460	0.17	-0.4
109,354	-		DDA3937_RS00460	0.17	+0.4
109,392	+		DDA3937_RS00460	0.19	-0.9
109,392	+		DDA3937_RS00460	0.19	-0.3
109,413	+		DDA3937_RS00460	0.21	-2.0
109,414	-		DDA3937_RS00460	0.21	-0.5
109,498	+		DDA3937_RS00460	0.26	+0.3
109,499	-		DDA3937_RS00460	0.26	+0.9
109,504	+		DDA3937_RS00460	0.26	-0.3
109,504	+		DDA3937_RS00460	0.26	-0.7
109,505	-		DDA3937_RS00460	0.26	-0.7
109,505	-		DDA3937_RS00460	0.26	-0.2
109,515	+		DDA3937_RS00460	0.27	-0.1
109,561	+		DDA3937_RS00460	0.30	-0.4
109,561	+		DDA3937_RS00460	0.30	-0.5
109,561	+		DDA3937_RS00460	0.30	-0.0
109,561	+		DDA3937_RS00460	0.30	-0.2
109,561	+		DDA3937_RS00460	0.30	-0.2
109,561	+		DDA3937_RS00460	0.30	+2.0
109,561	+		DDA3937_RS00460	0.30	+0.4
109,561	+		DDA3937_RS00460	0.30	-0.2
109,561	+		DDA3937_RS00460	0.30	+0.4
109,562	-		DDA3937_RS00460	0.30	-0.3
109,562	-		DDA3937_RS00460	0.30	+0.1
109,562	-		DDA3937_RS00460	0.30	-0.4
109,562	-		DDA3937_RS00460	0.30	-1.5
109,562	-		DDA3937_RS00460	0.30	+0.3
109,562	-		DDA3937_RS00460	0.30	+0.1
109,562	-		DDA3937_RS00460	0.30	-0.9
109,562	-		DDA3937_RS00460	0.30	-1.9
109,562	-		DDA3937_RS00460	0.30	-0.2
109,564	-		DDA3937_RS00460	0.30	-0.4
109,564	-		DDA3937_RS00460	0.30	-1.0
109,732	+		DDA3937_RS00460	0.40	-0.2
109,733	-		DDA3937_RS00460	0.41	+2.2
109,756	+		DDA3937_RS00460	0.42	+1.2
109,756	+		DDA3937_RS00460	0.42	+0.5
109,757	-		DDA3937_RS00460	0.42	-0.4
109,757	-		DDA3937_RS00460	0.42	-0.7
109,960	+		DDA3937_RS00460	0.55	-1.2