Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00360 and DDA3937_RS22940 overlap by 8 nucleotides DDA3937_RS22940 and DDA3937_RS00365 overlap by 26 nucleotides
DDA3937_RS00360: DDA3937_RS00360 - methyl-accepting chemotaxis protein, at 82,990 to 84,996
_RS00360
DDA3937_RS22940: DDA3937_RS22940 - hypothetical protein, at 84,989 to 85,255
_RS22940
DDA3937_RS00365: DDA3937_RS00365 - sugar-phosphatase, at 85,230 to 86,045
_RS00365
Position (kb) 84
85
86 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 84.052 kb on - strand, within DDA3937_RS00360 at 84.074 kb on + strand, within DDA3937_RS00360 at 84.074 kb on + strand, within DDA3937_RS00360 at 84.074 kb on + strand, within DDA3937_RS00360 at 84.074 kb on + strand, within DDA3937_RS00360 at 84.125 kb on + strand, within DDA3937_RS00360 at 84.125 kb on + strand, within DDA3937_RS00360 at 84.126 kb on - strand, within DDA3937_RS00360 at 84.213 kb on - strand, within DDA3937_RS00360 at 84.213 kb on - strand, within DDA3937_RS00360 at 84.257 kb on + strand, within DDA3937_RS00360 at 84.258 kb on - strand, within DDA3937_RS00360 at 84.264 kb on + strand, within DDA3937_RS00360 at 84.265 kb on - strand, within DDA3937_RS00360 at 84.265 kb on - strand, within DDA3937_RS00360 at 84.265 kb on - strand, within DDA3937_RS00360 at 84.292 kb on - strand, within DDA3937_RS00360 at 84.324 kb on - strand, within DDA3937_RS00360 at 84.384 kb on + strand, within DDA3937_RS00360 at 84.385 kb on - strand, within DDA3937_RS00360 at 84.387 kb on - strand, within DDA3937_RS00360 at 84.387 kb on - strand, within DDA3937_RS00360 at 84.387 kb on - strand, within DDA3937_RS00360 at 84.387 kb on - strand, within DDA3937_RS00360 at 84.392 kb on + strand, within DDA3937_RS00360 at 84.393 kb on - strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.397 kb on - strand, within DDA3937_RS00360 at 84.397 kb on - strand, within DDA3937_RS00360 at 84.397 kb on - strand, within DDA3937_RS00360 at 84.397 kb on - strand, within DDA3937_RS00360 at 84.397 kb on - strand, within DDA3937_RS00360 at 84.397 kb on - strand, within DDA3937_RS00360 at 84.397 kb on - strand, within DDA3937_RS00360 at 84.397 kb on - strand, within DDA3937_RS00360 at 84.398 kb on + strand, within DDA3937_RS00360 at 84.398 kb on + strand, within DDA3937_RS00360 at 84.398 kb on + strand, within DDA3937_RS00360 at 84.399 kb on - strand, within DDA3937_RS00360 at 84.399 kb on - strand, within DDA3937_RS00360 at 84.399 kb on - strand, within DDA3937_RS00360 at 84.399 kb on - strand, within DDA3937_RS00360 at 84.443 kb on + strand, within DDA3937_RS00360 at 84.443 kb on + strand, within DDA3937_RS00360 at 84.443 kb on + strand, within DDA3937_RS00360 at 84.443 kb on + strand, within DDA3937_RS00360 at 84.443 kb on + strand, within DDA3937_RS00360 at 84.444 kb on - strand, within DDA3937_RS00360 at 84.444 kb on - strand, within DDA3937_RS00360 at 84.444 kb on - strand, within DDA3937_RS00360 at 84.447 kb on - strand, within DDA3937_RS00360 at 84.447 kb on - strand, within DDA3937_RS00360 at 84.470 kb on + strand, within DDA3937_RS00360 at 84.566 kb on + strand, within DDA3937_RS00360 at 84.566 kb on + strand, within DDA3937_RS00360 at 84.566 kb on + strand, within DDA3937_RS00360 at 84.566 kb on + strand, within DDA3937_RS00360 at 84.567 kb on - strand, within DDA3937_RS00360 at 84.567 kb on - strand, within DDA3937_RS00360 at 84.567 kb on - strand, within DDA3937_RS00360 at 84.567 kb on - strand, within DDA3937_RS00360 at 84.742 kb on + strand, within DDA3937_RS00360 at 84.743 kb on - strand, within DDA3937_RS00360 at 84.743 kb on - strand, within DDA3937_RS00360 at 84.779 kb on + strand, within DDA3937_RS00360 at 84.779 kb on + strand, within DDA3937_RS00360 at 84.780 kb on - strand, within DDA3937_RS00360 at 84.797 kb on - strand at 84.862 kb on - strand at 84.873 kb on + strand at 84.891 kb on + strand at 84.892 kb on - strand at 84.892 kb on - strand at 84.913 kb on - strand at 84.963 kb on + strand at 85.103 kb on + strand, within DDA3937_RS22940 at 85.103 kb on + strand at 85.133 kb on - strand, within DDA3937_RS22940 at 85.133 kb on - strand, within DDA3937_RS22940 at 85.137 kb on + strand, within DDA3937_RS22940 at 85.137 kb on + strand, within DDA3937_RS22940 at 85.137 kb on + strand, within DDA3937_RS22940 at 85.137 kb on + strand, within DDA3937_RS22940 at 85.138 kb on - strand, within DDA3937_RS22940 at 85.138 kb on - strand, within DDA3937_RS22940 at 85.138 kb on - strand, within DDA3937_RS22940 at 85.138 kb on - strand, within DDA3937_RS22940 at 85.138 kb on - strand, within DDA3937_RS22940 at 85.147 kb on + strand, within DDA3937_RS22940 at 85.203 kb on + strand, within DDA3937_RS22940 at 85.207 kb on + strand, within DDA3937_RS22940 at 85.207 kb on + strand, within DDA3937_RS22940 at 85.208 kb on - strand, within DDA3937_RS22940 at 85.208 kb on - strand, within DDA3937_RS22940 at 85.208 kb on - strand, within DDA3937_RS22940 at 85.208 kb on - strand, within DDA3937_RS22940 at 85.208 kb on - strand, within DDA3937_RS22940 at 85.208 kb on - strand, within DDA3937_RS22940 at 85.208 kb on - strand, within DDA3937_RS22940 at 85.208 kb on - strand, within DDA3937_RS22940 at 85.217 kb on - strand, within DDA3937_RS22940 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.342 kb on - strand, within DDA3937_RS00365 at 85.342 kb on - strand, within DDA3937_RS00365 at 85.342 kb on - strand, within DDA3937_RS00365 at 85.386 kb on + strand, within DDA3937_RS00365 at 85.422 kb on + strand, within DDA3937_RS00365 at 85.423 kb on - strand, within DDA3937_RS00365 at 85.423 kb on - strand, within DDA3937_RS00365 at 85.423 kb on - strand, within DDA3937_RS00365 at 85.506 kb on + strand, within DDA3937_RS00365 at 85.570 kb on - strand, within DDA3937_RS00365 at 85.570 kb on - strand at 85.570 kb on - strand, within DDA3937_RS00365 at 85.602 kb on + strand, within DDA3937_RS00365 at 85.602 kb on + strand, within DDA3937_RS00365 at 85.603 kb on - strand, within DDA3937_RS00365 at 85.605 kb on - strand, within DDA3937_RS00365 at 85.605 kb on - strand, within DDA3937_RS00365 at 85.762 kb on - strand, within DDA3937_RS00365 at 85.788 kb on + strand, within DDA3937_RS00365 at 85.789 kb on - strand, within DDA3937_RS00365 at 85.943 kb on + strand, within DDA3937_RS00365 at 85.982 kb on + strand at 86.013 kb on + strand at 86.013 kb on + strand at 86.063 kb on + strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.068 kb on - strand at 86.068 kb on - strand at 86.076 kb on + strand at 86.076 kb on + strand at 86.077 kb on - strand at 86.106 kb on + strand at 86.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 84,052 - DDA3937_RS00360 0.53 +0.1 84,074 + DDA3937_RS00360 0.54 -1.2 84,074 + DDA3937_RS00360 0.54 +0.6 84,074 + DDA3937_RS00360 0.54 -0.0 84,074 + DDA3937_RS00360 0.54 +0.4 84,125 + DDA3937_RS00360 0.57 -1.6 84,125 + DDA3937_RS00360 0.57 +4.7 84,126 - DDA3937_RS00360 0.57 -1.0 84,213 - DDA3937_RS00360 0.61 -0.1 84,213 - DDA3937_RS00360 0.61 -0.8 84,257 + DDA3937_RS00360 0.63 -1.6 84,258 - DDA3937_RS00360 0.63 -0.5 84,264 + DDA3937_RS00360 0.63 -0.2 84,265 - DDA3937_RS00360 0.64 +1.4 84,265 - DDA3937_RS00360 0.64 +0.7 84,265 - DDA3937_RS00360 0.64 +0.2 84,292 - DDA3937_RS00360 0.65 -0.9 84,324 - DDA3937_RS00360 0.66 -1.0 84,384 + DDA3937_RS00360 0.69 +1.5 84,385 - DDA3937_RS00360 0.70 +1.1 84,387 - DDA3937_RS00360 0.70 +0.8 84,387 - DDA3937_RS00360 0.70 +0.1 84,387 - DDA3937_RS00360 0.70 +0.2 84,387 - DDA3937_RS00360 0.70 -0.7 84,392 + DDA3937_RS00360 0.70 -0.3 84,393 - DDA3937_RS00360 0.70 +0.4 84,396 + DDA3937_RS00360 0.70 +1.4 84,396 + DDA3937_RS00360 0.70 -1.2 84,396 + DDA3937_RS00360 0.70 +0.3 84,396 + DDA3937_RS00360 0.70 +1.0 84,396 + DDA3937_RS00360 0.70 +0.1 84,396 + DDA3937_RS00360 0.70 +0.8 84,396 + DDA3937_RS00360 0.70 +0.1 84,396 + DDA3937_RS00360 0.70 +0.5 84,396 + DDA3937_RS00360 0.70 -1.0 84,397 - DDA3937_RS00360 0.70 +0.7 84,397 - DDA3937_RS00360 0.70 +0.1 84,397 - DDA3937_RS00360 0.70 -1.7 84,397 - DDA3937_RS00360 0.70 -0.9 84,397 - DDA3937_RS00360 0.70 +0.9 84,397 - DDA3937_RS00360 0.70 -0.2 84,397 - DDA3937_RS00360 0.70 -0.6 84,397 - DDA3937_RS00360 0.70 -0.8 84,398 + DDA3937_RS00360 0.70 +1.1 84,398 + DDA3937_RS00360 0.70 -1.7 84,398 + DDA3937_RS00360 0.70 -0.1 84,399 - DDA3937_RS00360 0.70 -1.2 84,399 - DDA3937_RS00360 0.70 +0.2 84,399 - DDA3937_RS00360 0.70 -2.4 84,399 - DDA3937_RS00360 0.70 +0.8 84,443 + DDA3937_RS00360 0.72 -1.4 84,443 + DDA3937_RS00360 0.72 +1.6 84,443 + DDA3937_RS00360 0.72 -1.9 84,443 + DDA3937_RS00360 0.72 +1.1 84,443 + DDA3937_RS00360 0.72 -2.9 84,444 - DDA3937_RS00360 0.72 +1.4 84,444 - DDA3937_RS00360 0.72 -0.4 84,444 - DDA3937_RS00360 0.72 -1.3 84,447 - DDA3937_RS00360 0.73 +0.3 84,447 - DDA3937_RS00360 0.73 -1.4 84,470 + DDA3937_RS00360 0.74 -0.5 84,566 + DDA3937_RS00360 0.79 +0.1 84,566 + DDA3937_RS00360 0.79 +1.3 84,566 + DDA3937_RS00360 0.79 -1.4 84,566 + DDA3937_RS00360 0.79 +1.1 84,567 - DDA3937_RS00360 0.79 +0.3 84,567 - DDA3937_RS00360 0.79 +0.2 84,567 - DDA3937_RS00360 0.79 +1.5 84,567 - DDA3937_RS00360 0.79 +0.1 84,742 + DDA3937_RS00360 0.87 -2.6 84,743 - DDA3937_RS00360 0.87 -0.5 84,743 - DDA3937_RS00360 0.87 -0.2 84,779 + DDA3937_RS00360 0.89 +0.4 84,779 + DDA3937_RS00360 0.89 -0.1 84,780 - DDA3937_RS00360 0.89 +0.0 84,797 - +0.6 84,862 - -0.9 84,873 + -0.2 84,891 + -1.0 84,892 - -0.4 84,892 - -1.0 84,913 - +1.2 84,963 + -2.1 85,103 + DDA3937_RS22940 0.43 +0.7 85,103 + -0.2 85,133 - DDA3937_RS22940 0.54 -1.6 85,133 - DDA3937_RS22940 0.54 +2.6 85,137 + DDA3937_RS22940 0.55 -1.2 85,137 + DDA3937_RS22940 0.55 +0.6 85,137 + DDA3937_RS22940 0.55 +0.1 85,137 + DDA3937_RS22940 0.55 -1.3 85,138 - DDA3937_RS22940 0.56 +0.7 85,138 - DDA3937_RS22940 0.56 +0.1 85,138 - DDA3937_RS22940 0.56 +0.2 85,138 - DDA3937_RS22940 0.56 -0.6 85,138 - DDA3937_RS22940 0.56 -0.2 85,147 + DDA3937_RS22940 0.59 -1.3 85,203 + DDA3937_RS22940 0.80 -2.9 85,207 + DDA3937_RS22940 0.82 +0.3 85,207 + DDA3937_RS22940 0.82 -2.0 85,208 - DDA3937_RS22940 0.82 +0.6 85,208 - DDA3937_RS22940 0.82 -1.5 85,208 - DDA3937_RS22940 0.82 +0.2 85,208 - DDA3937_RS22940 0.82 -0.6 85,208 - DDA3937_RS22940 0.82 -0.4 85,208 - DDA3937_RS22940 0.82 +3.0 85,208 - DDA3937_RS22940 0.82 -0.7 85,208 - DDA3937_RS22940 0.82 +1.4 85,217 - DDA3937_RS22940 0.85 -0.2 85,341 + DDA3937_RS00365 0.14 -0.4 85,341 + DDA3937_RS00365 0.14 -1.3 85,341 + DDA3937_RS00365 0.14 +0.0 85,341 + DDA3937_RS00365 0.14 -0.9 85,341 + DDA3937_RS00365 0.14 -0.4 85,341 + DDA3937_RS00365 0.14 -1.0 85,341 + DDA3937_RS00365 0.14 -1.2 85,341 + DDA3937_RS00365 0.14 -1.0 85,341 + DDA3937_RS00365 0.14 -0.8 85,341 + DDA3937_RS00365 0.14 +0.7 85,342 - DDA3937_RS00365 0.14 -0.1 85,342 - DDA3937_RS00365 0.14 +4.5 85,342 - DDA3937_RS00365 0.14 -2.4 85,386 + DDA3937_RS00365 0.19 -0.3 85,422 + DDA3937_RS00365 0.24 +0.4 85,423 - DDA3937_RS00365 0.24 -1.6 85,423 - DDA3937_RS00365 0.24 -2.5 85,423 - DDA3937_RS00365 0.24 -0.5 85,506 + DDA3937_RS00365 0.34 -1.2 85,570 - DDA3937_RS00365 0.42 -0.1 85,570 - -1.2 85,570 - DDA3937_RS00365 0.42 -0.2 85,602 + DDA3937_RS00365 0.46 -0.4 85,602 + DDA3937_RS00365 0.46 +0.2 85,603 - DDA3937_RS00365 0.46 -0.2 85,605 - DDA3937_RS00365 0.46 -0.8 85,605 - DDA3937_RS00365 0.46 +0.8 85,762 - DDA3937_RS00365 0.65 -1.6 85,788 + DDA3937_RS00365 0.68 -1.0 85,789 - DDA3937_RS00365 0.69 +0.2 85,943 + DDA3937_RS00365 0.87 -0.6 85,982 + -0.4 86,013 + -0.7 86,013 + +0.6 86,063 + +0.1 86,064 - +0.7 86,064 - -1.1 86,064 - -0.2 86,064 - -0.7 86,064 - -0.4 86,064 - +0.2 86,064 - -0.2 86,064 - -0.4 86,064 - -1.5 86,064 - -0.2 86,064 - +3.2 86,064 - +1.3 86,064 - -0.4 86,064 - -0.8 86,064 - -0.6 86,064 - -0.9 86,064 - -0.5 86,064 - -0.5 86,064 - -1.5 86,064 - -1.1 86,064 - +1.1 86,064 - -1.3 86,065 + +0.5 86,065 + -2.4 86,065 + -1.4 86,065 + +0.9 86,065 + -0.2 86,065 + -0.6 86,065 + +0.3 86,065 + -0.8 86,065 + -0.2 86,065 + -0.2 86,065 + +0.4 86,065 + -0.6 86,065 + -0.2 86,065 + -0.7 86,065 + -0.6 86,065 + -1.4 86,065 + +0.3 86,065 + -1.5 86,065 + -1.4 86,065 + -1.1 86,065 + -0.8 86,065 + -1.6 86,065 + -0.3 86,065 + -1.6 86,065 + -0.6 86,066 - +0.3 86,066 - +1.6 86,066 - +3.0 86,066 - +0.2 86,066 - -0.0 86,066 - -0.2 86,066 - -1.2 86,066 - -0.2 86,066 - +2.6 86,066 - -0.1 86,066 - -0.5 86,066 - +0.6 86,066 - +0.2 86,066 - -0.1 86,066 - -1.3 86,066 - -0.6 86,066 - +0.6 86,066 - +0.2 86,066 - -0.4 86,066 - +0.6 86,066 - +0.2 86,066 - -0.0 86,068 - -1.0 86,068 - -0.7 86,076 + +1.1 86,076 + -1.2 86,077 - -0.1 86,106 + +0.4 86,208 - +0.7
Or see this region's nucleotide sequence