Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21265

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,840,631	+		DDA3937_RS21255	0.66	-0.6
4,840,632	-		DDA3937_RS21255	0.66	+0.2
4,840,653	+		DDA3937_RS21255	0.69	-0.2
4,840,653	+		DDA3937_RS21255	0.69	+0.1
4,840,654	-		DDA3937_RS21255	0.69	-0.7
4,840,654	-		DDA3937_RS21255	0.69	-0.2
4,840,654	-		DDA3937_RS21255	0.69	+0.0
4,840,655	+		DDA3937_RS21255	0.69	-0.4
4,840,655	+		DDA3937_RS21255	0.69	-2.1
4,840,655	+		DDA3937_RS21255	0.69	+0.9
4,840,656	-		DDA3937_RS21255	0.69	+0.4
4,840,676	+		DDA3937_RS21255	0.71	+0.3
4,840,676	+		DDA3937_RS21255	0.71	-1.0
4,840,676	+		DDA3937_RS21255	0.71	-1.5
4,840,676	+		DDA3937_RS21255	0.71	-0.9
4,840,676	+		DDA3937_RS21255	0.71	+0.5
4,840,677	-		DDA3937_RS21255	0.71	+0.6
4,840,677	-		DDA3937_RS21255	0.71	+0.8
4,840,677	-		DDA3937_RS21255	0.71	+1.5
4,840,677	-		DDA3937_RS21255	0.71	-2.5
4,840,677	-		DDA3937_RS21255	0.71	-1.5
4,840,677	-		DDA3937_RS21255	0.71	+0.5
4,840,806	-		DDA3937_RS21255	0.87	-0.2
4,840,907	+				+0.1
4,840,908	-				-0.5
4,840,917	+				+0.5
4,840,917	+				-0.9
4,840,917	+				-0.4
4,840,917	+				+0.2
4,840,918	-				-0.8
4,840,918	-				+1.1
4,840,918	-				-2.7
4,840,918	-				+1.0
4,840,918	-				+0.0
4,840,967	-				+2.4
4,840,969	+				-0.7
4,840,969	+				-1.1
4,840,969	+				-1.5
4,840,969	+				+0.6
4,840,969	+				-2.6
4,840,969	+				+1.1
4,840,969	+				+2.5
4,840,969	+				-0.6
4,840,969	+				+1.2
4,840,969	+				+0.0
4,840,969	+				-0.9
4,840,969	+				+0.5
4,840,970	-				-0.9
4,840,970	-				-1.3
4,840,970	-				-1.3
4,840,970	-				+1.1
4,840,970	-				-0.8
4,840,970	-				-1.5
4,840,970	-				+0.9
4,840,971	+				+0.4
4,840,971	+				+0.5
4,840,971	+				+0.0
4,840,972	-				-0.5
4,840,972	-				-0.5
4,840,976	+				+0.5
4,840,976	+				-0.1
4,840,980	+				+0.9
4,840,981	-				-1.3
4,840,981	-				-1.7
4,841,127	+				-0.5
4,841,128	-				+0.5
4,841,128	-				-0.5
4,841,151	+		DDA3937_RS21260	0.16	-1.1
4,841,182	+		DDA3937_RS21260	0.27	-2.7
4,841,206	+		DDA3937_RS21260	0.36	-1.3
4,841,207	-		DDA3937_RS21260	0.36	-0.9
4,841,207	-		DDA3937_RS21260	0.36	-0.8
4,841,207	-		DDA3937_RS21260	0.36	+2.4
4,841,207	-		DDA3937_RS21260	0.36	-0.2
4,841,372	-				-0.7
4,841,374	-				+0.0
4,841,402	+				-0.4
4,841,403	-				+0.3
4,841,403	-				-0.5
4,841,414	+				-1.3
4,841,447	+				+0.2
4,841,448	-				-0.3
4,841,448	-				-0.9
4,841,448	-				-0.1
4,841,486	+				+0.1
4,841,486	+				+1.9
4,841,486	+				-0.3
4,841,486	+				+0.7
4,841,486	+				-0.2
4,841,486	+				-1.0
4,841,486	+				-2.7
4,841,487	-				+1.5
4,841,487	-				+0.6
4,841,487	-				-1.9
4,841,487	-				+0.2
4,841,487	-				+0.5
4,841,487	-				-1.9
4,841,487	-				+0.6
4,841,487	-				-2.0
4,841,487	-				-0.7
4,841,487	-				-2.9
4,841,487	-				-0.9
4,841,500	+				-0.1
4,841,500	+				-0.1
4,841,501	-				-0.3
4,841,501	-				-2.6
4,841,501	-				+1.2
4,841,532	+				-3.4
4,841,533	-				-1.3
4,841,533	-				-0.1
4,841,837	+		DDA3937_RS21265	0.16	+0.1
4,841,873	+		DDA3937_RS21265	0.17	-2.1
4,841,874	-		DDA3937_RS21265	0.17	-0.4
4,842,164	-		DDA3937_RS21265	0.32	-2.0
4,842,173	+		DDA3937_RS21265	0.32	-1.1
4,842,173	+		DDA3937_RS21265	0.32	+1.0
4,842,191	+		DDA3937_RS21265	0.33	+0.2
4,842,191	+		DDA3937_RS21265	0.33	-1.2
4,842,191	+		DDA3937_RS21265	0.33	-1.5
4,842,191	+		DDA3937_RS21265	0.33	-0.9
4,842,192	-		DDA3937_RS21265	0.33	-0.7
4,842,192	-		DDA3937_RS21265	0.33	+1.1
4,842,192	-		DDA3937_RS21265	0.33	-0.9
4,842,192	-		DDA3937_RS21265	0.33	-1.0
4,842,192	-		DDA3937_RS21265	0.33	-0.4
4,842,224	+		DDA3937_RS21265	0.35	-1.1
4,842,224	+		DDA3937_RS21265	0.35	-0.7
4,842,225	-		DDA3937_RS21265	0.35	-0.9
4,842,233	+		DDA3937_RS21265	0.35	-3.2
4,842,234	-		DDA3937_RS21265	0.35	-0.7
4,842,234	-		DDA3937_RS21265	0.35	-1.1
4,842,524	+		DDA3937_RS21265	0.49	-1.6
4,842,524	+		DDA3937_RS21265	0.49	-0.3
4,842,524	+		DDA3937_RS21265	0.49	+1.5
4,842,525	-		DDA3937_RS21265	0.49	+0.7
4,842,527	+		DDA3937_RS21265	0.49	+0.2
4,842,528	-				+0.5
4,842,555	-		DDA3937_RS21265	0.51	+0.9
4,842,555	-		DDA3937_RS21265	0.51	+0.7
4,842,555	-		DDA3937_RS21265	0.51	-1.5
4,842,555	-		DDA3937_RS21265	0.51	-1.3
4,842,555	-		DDA3937_RS21265	0.51	-0.7
4,842,584	+		DDA3937_RS21265	0.52	-0.2
4,842,584	+		DDA3937_RS21265	0.52	-0.1
4,842,584	+		DDA3937_RS21265	0.52	-1.3
4,842,584	+		DDA3937_RS21265	0.52	-0.7
4,842,638	+		DDA3937_RS21265	0.55	+0.1
4,842,639	-		DDA3937_RS21265	0.55	-0.4
4,842,740	+		DDA3937_RS21265	0.60	-0.3
4,842,740	+		DDA3937_RS21265	0.60	-1.3
4,842,740	+		DDA3937_RS21265	0.60	+0.3
4,842,740	+		DDA3937_RS21265	0.60	-0.3
4,842,741	-		DDA3937_RS21265	0.60	-0.3
4,842,741	-		DDA3937_RS21265	0.60	-2.1
4,842,741	-		DDA3937_RS21265	0.60	-0.9
4,842,741	-		DDA3937_RS21265	0.60	-0.4
4,842,752	+		DDA3937_RS21265	0.60	-0.6
4,842,845	+		DDA3937_RS21265	0.65	+0.5
4,842,857	-		DDA3937_RS21265	0.65	-0.3
4,843,082	+		DDA3937_RS21265	0.77	+0.6
4,843,110	+		DDA3937_RS21265	0.78	-0.1
4,843,142	+		DDA3937_RS21265	0.79	-0.4
4,843,142	+		DDA3937_RS21265	0.79	+0.6
4,843,338	-		DDA3937_RS21265	0.89	-1.3
4,843,349	+		DDA3937_RS21265	0.90	-0.1
4,843,350	-		DDA3937_RS21265	0.90	-2.0
4,843,352	+		DDA3937_RS21265	0.90	-0.6
4,843,352	+		DDA3937_RS21265	0.90	+0.7
4,843,352	+		DDA3937_RS21265	0.90	-1.8
4,843,352	+		DDA3937_RS21265	0.90	-0.1
4,843,352	+		DDA3937_RS21265	0.90	-2.3
4,843,353	-		DDA3937_RS21265	0.90	-0.9
4,843,353	-		DDA3937_RS21265	0.90	-0.4
4,843,358	+				-0.9
4,843,358	+				-1.3
4,843,358	+				-0.5
4,843,358	+				-0.7
4,843,359	-				-0.5
4,843,359	-				+0.5
4,843,359	-				+0.6
4,843,414	+				+0.6
4,843,415	-				+0.8
4,843,415	-				+1.8
4,843,571	+				-0.6
4,843,572	-				+0.3
4,843,664	+		DDA3937_RS21270	0.14	-1.3
4,843,665	-		DDA3937_RS21270	0.14	-0.9
4,843,665	-		DDA3937_RS21270	0.14	-2.1
4,843,688	+		DDA3937_RS21270	0.17	-0.5
4,843,688	+		DDA3937_RS21270	0.17	-1.0
4,843,688	+		DDA3937_RS21270	0.17	-0.3
4,843,689	-		DDA3937_RS21270	0.17	+4.7
4,843,689	-		DDA3937_RS21270	0.17	+1.7
4,843,689	-		DDA3937_RS21270	0.17	-2.1
4,843,689	-		DDA3937_RS21270	0.17	-3.1
4,843,689	-		DDA3937_RS21270	0.17	+0.8
4,843,689	-		DDA3937_RS21270	0.17	-1.2
4,843,689	-		DDA3937_RS21270	0.17	-0.3
4,843,692	+		DDA3937_RS21270	0.18	-1.0
4,843,693	-		DDA3937_RS21270	0.18	-0.7
4,843,810	-		DDA3937_RS21270	0.33	-0.4
4,843,819	+		DDA3937_RS21270	0.35	-0.4
4,843,819	+		DDA3937_RS21270	0.35	-0.3
4,843,819	+		DDA3937_RS21270	0.35	-0.4
4,843,820	-		DDA3937_RS21270	0.35	+1.5
4,843,820	-		DDA3937_RS21270	0.35	+0.8
4,844,063	-		DDA3937_RS21270	0.67	-0.2
4,844,222	-		DDA3937_RS21270	0.88	+1.7
4,844,291	-				-0.5
4,844,381	+				-1.1
4,844,381	+				-0.5
4,844,382	-				-1.3
4,844,382	-				-1.5
4,844,412	+				-0.8
4,844,443	-				-0.5
4,844,453	+				-0.5
4,844,453	+				-2.4
4,844,454	-				+0.0
4,844,454	-				-0.7
4,844,492	+				+0.0
4,844,501	-				-0.1
4,844,517	-				+0.3
4,844,521	+				-0.5
4,844,522	-				+0.1
4,844,522	-				+0.6