Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20945 and DDA3937_RS20950 are separated by 361 nucleotides DDA3937_RS20950 and DDA3937_RS20955 are separated by 336 nucleotides
DDA3937_RS20945: DDA3937_RS20945 - IS110 family transposase, at 4,762,050 to 4,763,039
_RS20945
DDA3937_RS20950: DDA3937_RS20950 - aldehyde dehydrogenase, at 4,763,401 to 4,764,939
_RS20950
DDA3937_RS20955: DDA3937_RS20955 - formate dehydrogenase accessory sulfurtransferase FdhD, at 4,765,276 to 4,766,130
_RS20955
Position (kb) 4763
4764
4765 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4763.168 kb on + strand at 4763.207 kb on - strand at 4763.340 kb on + strand at 4763.340 kb on + strand at 4763.340 kb on + strand at 4763.342 kb on + strand at 4763.342 kb on + strand at 4763.342 kb on + strand at 4763.383 kb on + strand at 4763.429 kb on + strand at 4763.429 kb on + strand at 4763.430 kb on - strand at 4763.459 kb on + strand at 4763.546 kb on + strand at 4763.771 kb on + strand, within DDA3937_RS20950 at 4763.771 kb on + strand, within DDA3937_RS20950 at 4763.771 kb on + strand, within DDA3937_RS20950 at 4763.771 kb on + strand, within DDA3937_RS20950 at 4763.771 kb on + strand, within DDA3937_RS20950 at 4763.771 kb on + strand, within DDA3937_RS20950 at 4763.771 kb on + strand, within DDA3937_RS20950 at 4763.772 kb on - strand, within DDA3937_RS20950 at 4763.772 kb on - strand, within DDA3937_RS20950 at 4763.772 kb on - strand, within DDA3937_RS20950 at 4763.772 kb on - strand, within DDA3937_RS20950 at 4763.774 kb on + strand, within DDA3937_RS20950 at 4763.774 kb on + strand, within DDA3937_RS20950 at 4763.774 kb on + strand, within DDA3937_RS20950 at 4763.775 kb on - strand, within DDA3937_RS20950 at 4763.858 kb on + strand, within DDA3937_RS20950 at 4763.858 kb on + strand, within DDA3937_RS20950 at 4763.859 kb on - strand, within DDA3937_RS20950 at 4763.859 kb on - strand, within DDA3937_RS20950 at 4763.859 kb on - strand, within DDA3937_RS20950 at 4763.859 kb on - strand, within DDA3937_RS20950 at 4763.859 kb on - strand, within DDA3937_RS20950 at 4763.859 kb on - strand, within DDA3937_RS20950 at 4763.859 kb on - strand, within DDA3937_RS20950 at 4763.890 kb on + strand, within DDA3937_RS20950 at 4763.981 kb on + strand, within DDA3937_RS20950 at 4763.982 kb on - strand, within DDA3937_RS20950 at 4764.036 kb on + strand, within DDA3937_RS20950 at 4764.115 kb on - strand, within DDA3937_RS20950 at 4764.115 kb on - strand, within DDA3937_RS20950 at 4764.219 kb on + strand, within DDA3937_RS20950 at 4764.220 kb on - strand, within DDA3937_RS20950 at 4764.225 kb on + strand, within DDA3937_RS20950 at 4764.245 kb on + strand, within DDA3937_RS20950 at 4764.375 kb on + strand, within DDA3937_RS20950 at 4764.375 kb on + strand, within DDA3937_RS20950 at 4764.375 kb on + strand, within DDA3937_RS20950 at 4764.476 kb on + strand, within DDA3937_RS20950 at 4764.476 kb on + strand, within DDA3937_RS20950 at 4764.528 kb on + strand, within DDA3937_RS20950 at 4764.529 kb on - strand, within DDA3937_RS20950 at 4764.815 kb on + strand at 4764.815 kb on + strand at 4764.818 kb on + strand at 4764.818 kb on + strand at 4764.818 kb on + strand at 4764.819 kb on - strand at 4764.866 kb on + strand at 4764.896 kb on + strand at 4764.943 kb on + strand at 4764.944 kb on - strand at 4764.944 kb on - strand at 4764.952 kb on + strand at 4764.953 kb on - strand at 4764.953 kb on - strand at 4764.953 kb on - strand at 4764.958 kb on + strand at 4764.959 kb on - strand at 4765.070 kb on + strand at 4765.070 kb on + strand at 4765.071 kb on - strand at 4765.071 kb on - strand at 4765.087 kb on + strand at 4765.088 kb on - strand at 4765.094 kb on + strand at 4765.095 kb on - strand at 4765.101 kb on + strand at 4765.101 kb on + strand at 4765.101 kb on + strand at 4765.103 kb on + strand at 4765.103 kb on + strand at 4765.111 kb on + strand at 4765.112 kb on - strand at 4765.130 kb on + strand at 4765.130 kb on + strand at 4765.130 kb on + strand at 4765.131 kb on - strand at 4765.175 kb on + strand at 4765.175 kb on + strand at 4765.176 kb on - strand at 4765.176 kb on - strand at 4765.183 kb on + strand at 4765.195 kb on - strand at 4765.208 kb on + strand at 4765.227 kb on - strand at 4765.266 kb on + strand at 4765.266 kb on + strand at 4765.267 kb on - strand at 4765.267 kb on - strand at 4765.299 kb on + strand at 4765.300 kb on - strand at 4765.300 kb on - strand at 4765.300 kb on - strand at 4765.300 kb on - strand at 4765.393 kb on - strand, within DDA3937_RS20955 at 4765.441 kb on + strand, within DDA3937_RS20955 at 4765.441 kb on + strand, within DDA3937_RS20955 at 4765.441 kb on + strand, within DDA3937_RS20955 at 4765.441 kb on + strand, within DDA3937_RS20955 at 4765.442 kb on - strand at 4765.442 kb on - strand, within DDA3937_RS20955 at 4765.442 kb on - strand, within DDA3937_RS20955 at 4765.442 kb on - strand, within DDA3937_RS20955 at 4765.449 kb on + strand at 4765.450 kb on - strand, within DDA3937_RS20955 at 4765.460 kb on + strand, within DDA3937_RS20955 at 4765.460 kb on + strand, within DDA3937_RS20955 at 4765.460 kb on + strand, within DDA3937_RS20955 at 4765.460 kb on + strand, within DDA3937_RS20955 at 4765.460 kb on + strand, within DDA3937_RS20955 at 4765.460 kb on + strand, within DDA3937_RS20955 at 4765.460 kb on + strand, within DDA3937_RS20955 at 4765.460 kb on + strand, within DDA3937_RS20955 at 4765.461 kb on - strand, within DDA3937_RS20955 at 4765.461 kb on - strand, within DDA3937_RS20955 at 4765.549 kb on + strand, within DDA3937_RS20955 at 4765.549 kb on + strand, within DDA3937_RS20955 at 4765.549 kb on + strand, within DDA3937_RS20955 at 4765.549 kb on + strand, within DDA3937_RS20955 at 4765.549 kb on + strand, within DDA3937_RS20955 at 4765.549 kb on + strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.554 kb on + strand, within DDA3937_RS20955 at 4765.781 kb on + strand, within DDA3937_RS20955
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,763,168 + -0.0 4,763,207 - -0.3 4,763,340 + -0.6 4,763,340 + +0.2 4,763,340 + -0.2 4,763,342 + +0.2 4,763,342 + -0.7 4,763,342 + -1.2 4,763,383 + -0.8 4,763,429 + -1.3 4,763,429 + -0.6 4,763,430 - -0.1 4,763,459 + +0.6 4,763,546 + -1.8 4,763,771 + DDA3937_RS20950 0.24 -1.3 4,763,771 + DDA3937_RS20950 0.24 -0.1 4,763,771 + DDA3937_RS20950 0.24 -0.2 4,763,771 + DDA3937_RS20950 0.24 +0.7 4,763,771 + DDA3937_RS20950 0.24 +0.9 4,763,771 + DDA3937_RS20950 0.24 -0.5 4,763,771 + DDA3937_RS20950 0.24 +1.5 4,763,772 - DDA3937_RS20950 0.24 -1.5 4,763,772 - DDA3937_RS20950 0.24 -0.7 4,763,772 - DDA3937_RS20950 0.24 +0.0 4,763,772 - DDA3937_RS20950 0.24 -0.1 4,763,774 + DDA3937_RS20950 0.24 -0.4 4,763,774 + DDA3937_RS20950 0.24 +0.3 4,763,774 + DDA3937_RS20950 0.24 -0.7 4,763,775 - DDA3937_RS20950 0.24 -1.1 4,763,858 + DDA3937_RS20950 0.30 -0.3 4,763,858 + DDA3937_RS20950 0.30 +0.3 4,763,859 - DDA3937_RS20950 0.30 +0.6 4,763,859 - DDA3937_RS20950 0.30 +0.1 4,763,859 - DDA3937_RS20950 0.30 +0.7 4,763,859 - DDA3937_RS20950 0.30 +0.9 4,763,859 - DDA3937_RS20950 0.30 -0.6 4,763,859 - DDA3937_RS20950 0.30 -1.6 4,763,859 - DDA3937_RS20950 0.30 -0.6 4,763,890 + DDA3937_RS20950 0.32 -0.9 4,763,981 + DDA3937_RS20950 0.38 -1.5 4,763,982 - DDA3937_RS20950 0.38 +0.1 4,764,036 + DDA3937_RS20950 0.41 -0.5 4,764,115 - DDA3937_RS20950 0.46 -1.1 4,764,115 - DDA3937_RS20950 0.46 -1.4 4,764,219 + DDA3937_RS20950 0.53 -0.1 4,764,220 - DDA3937_RS20950 0.53 -0.5 4,764,225 + DDA3937_RS20950 0.54 +0.1 4,764,245 + DDA3937_RS20950 0.55 -1.3 4,764,375 + DDA3937_RS20950 0.63 -0.3 4,764,375 + DDA3937_RS20950 0.63 -1.3 4,764,375 + DDA3937_RS20950 0.63 +0.2 4,764,476 + DDA3937_RS20950 0.70 -0.3 4,764,476 + DDA3937_RS20950 0.70 -0.1 4,764,528 + DDA3937_RS20950 0.73 -2.2 4,764,529 - DDA3937_RS20950 0.73 -1.3 4,764,815 + -0.5 4,764,815 + -0.3 4,764,818 + -0.5 4,764,818 + +0.8 4,764,818 + -0.4 4,764,819 - -0.1 4,764,866 + -2.5 4,764,896 + +1.2 4,764,943 + -1.6 4,764,944 - -0.3 4,764,944 - -0.2 4,764,952 + -1.1 4,764,953 - +0.9 4,764,953 - -0.9 4,764,953 - -0.5 4,764,958 + -0.5 4,764,959 - -3.1 4,765,070 + +0.7 4,765,070 + -0.4 4,765,071 - +0.8 4,765,071 - +0.5 4,765,087 + +0.3 4,765,088 - +0.0 4,765,094 + -0.2 4,765,095 - +0.9 4,765,101 + +1.1 4,765,101 + +0.0 4,765,101 + +0.7 4,765,103 + -0.7 4,765,103 + +0.5 4,765,111 + -0.1 4,765,112 - +0.0 4,765,130 + -2.0 4,765,130 + -1.0 4,765,130 + +0.8 4,765,131 - -0.1 4,765,175 + -0.4 4,765,175 + +0.2 4,765,176 - +0.0 4,765,176 - +0.2 4,765,183 + -1.1 4,765,195 - +1.4 4,765,208 + -0.3 4,765,227 - -0.9 4,765,266 + +0.7 4,765,266 + -0.5 4,765,267 - -1.5 4,765,267 - -0.5 4,765,299 + -0.2 4,765,300 - -0.6 4,765,300 - -1.2 4,765,300 - +1.0 4,765,300 - -0.1 4,765,393 - DDA3937_RS20955 0.14 -1.2 4,765,441 + DDA3937_RS20955 0.19 -0.4 4,765,441 + DDA3937_RS20955 0.19 -0.2 4,765,441 + DDA3937_RS20955 0.19 -1.2 4,765,441 + DDA3937_RS20955 0.19 +0.0 4,765,442 - -1.3 4,765,442 - DDA3937_RS20955 0.19 +0.2 4,765,442 - DDA3937_RS20955 0.19 -0.2 4,765,442 - DDA3937_RS20955 0.19 -2.1 4,765,449 + -0.1 4,765,450 - DDA3937_RS20955 0.20 -0.3 4,765,460 + DDA3937_RS20955 0.22 -1.1 4,765,460 + DDA3937_RS20955 0.22 -1.5 4,765,460 + DDA3937_RS20955 0.22 +0.6 4,765,460 + DDA3937_RS20955 0.22 +0.2 4,765,460 + DDA3937_RS20955 0.22 -1.8 4,765,460 + DDA3937_RS20955 0.22 -0.9 4,765,460 + DDA3937_RS20955 0.22 +3.2 4,765,460 + DDA3937_RS20955 0.22 -1.3 4,765,461 - DDA3937_RS20955 0.22 -0.7 4,765,461 - DDA3937_RS20955 0.22 +0.1 4,765,549 + DDA3937_RS20955 0.32 -2.9 4,765,549 + DDA3937_RS20955 0.32 -1.9 4,765,549 + DDA3937_RS20955 0.32 -2.3 4,765,549 + DDA3937_RS20955 0.32 -2.2 4,765,549 + DDA3937_RS20955 0.32 -3.6 4,765,549 + DDA3937_RS20955 0.32 +0.5 4,765,550 - DDA3937_RS20955 0.32 -0.2 4,765,550 - DDA3937_RS20955 0.32 +0.8 4,765,550 - DDA3937_RS20955 0.32 -1.0 4,765,550 - DDA3937_RS20955 0.32 -1.8 4,765,550 - DDA3937_RS20955 0.32 -2.6 4,765,550 - DDA3937_RS20955 0.32 -1.0 4,765,550 - DDA3937_RS20955 0.32 -0.4 4,765,550 - DDA3937_RS20955 0.32 -1.2 4,765,550 - DDA3937_RS20955 0.32 -1.2 4,765,550 - DDA3937_RS20955 0.32 -2.6 4,765,550 - -0.5 4,765,550 - DDA3937_RS20955 0.32 -1.3 4,765,550 - DDA3937_RS20955 0.32 -1.4 4,765,550 - DDA3937_RS20955 0.32 -1.1 4,765,554 + DDA3937_RS20955 0.33 -2.7 4,765,781 + DDA3937_RS20955 0.59 -1.4
Or see this region's nucleotide sequence