Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20805

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,726,272	+		DDA3937_RS20800	0.25	+0.0
4,726,272	+		DDA3937_RS20800	0.25	-0.1
4,726,272	+		DDA3937_RS20800	0.25	+3.4
4,726,272	+		DDA3937_RS20800	0.25	-0.3
4,726,273	-		DDA3937_RS20800	0.25	+1.8
4,726,273	-		DDA3937_RS20800	0.25	+0.2
4,726,273	-		DDA3937_RS20800	0.25	+0.8
4,726,273	-		DDA3937_RS20800	0.25	-1.3
4,726,273	-		DDA3937_RS20800	0.25	-0.9
4,726,476	-		DDA3937_RS20800	0.47	+1.3
4,726,476	-		DDA3937_RS20800	0.47	-0.8
4,726,476	-		DDA3937_RS20800	0.47	-1.5
4,726,480	+		DDA3937_RS20800	0.47	-0.3
4,726,481	-		DDA3937_RS20800	0.47	-1.0
4,726,481	-		DDA3937_RS20800	0.47	-1.0
4,726,481	-		DDA3937_RS20800	0.47	-0.8
4,726,520	+		DDA3937_RS20800	0.51	+0.1
4,726,520	+		DDA3937_RS20800	0.51	-2.1
4,726,520	+		DDA3937_RS20800	0.51	-0.9
4,726,520	+		DDA3937_RS20800	0.51	+2.6
4,726,520	+		DDA3937_RS20800	0.51	-0.4
4,726,521	-		DDA3937_RS20800	0.51	+0.1
4,726,521	-		DDA3937_RS20800	0.51	+2.1
4,726,521	-		DDA3937_RS20800	0.51	-1.4
4,726,523	+		DDA3937_RS20800	0.52	-1.9
4,726,523	+		DDA3937_RS20800	0.52	-1.1
4,726,524	-		DDA3937_RS20800	0.52	-0.6
4,726,524	-		DDA3937_RS20800	0.52	+0.1
4,726,524	-		DDA3937_RS20800	0.52	-0.3
4,726,524	-		DDA3937_RS20800	0.52	-1.8
4,726,582	+		DDA3937_RS20800	0.58	-0.3
4,726,582	+		DDA3937_RS20800	0.58	-0.5
4,726,582	+		DDA3937_RS20800	0.58	-1.0
4,726,583	-		DDA3937_RS20800	0.58	+0.0
4,726,583	-		DDA3937_RS20800	0.58	+0.7
4,726,583	-		DDA3937_RS20800	0.58	-1.6
4,726,593	+		DDA3937_RS20800	0.59	+0.4
4,726,593	+		DDA3937_RS20800	0.59	+0.5
4,726,593	+		DDA3937_RS20800	0.59	-0.9
4,726,593	+		DDA3937_RS20800	0.59	-0.3
4,726,593	+		DDA3937_RS20800	0.59	+0.6
4,726,594	-		DDA3937_RS20800	0.59	-0.7
4,726,659	+		DDA3937_RS20800	0.66	+0.8
4,726,659	+		DDA3937_RS20800	0.66	-1.3
4,726,660	-		DDA3937_RS20800	0.66	-3.0
4,726,694	-		DDA3937_RS20800	0.70	-0.8
4,726,702	+		DDA3937_RS20800	0.71	-1.1
4,726,770	+		DDA3937_RS20800	0.78	+0.1
4,726,771	-		DDA3937_RS20800	0.78	-0.6
4,726,771	-		DDA3937_RS20800	0.78	+1.8
4,726,839	+		DDA3937_RS20800	0.85	-0.0
4,726,839	+		DDA3937_RS20800	0.85	+0.0
4,726,839	+		DDA3937_RS20800	0.85	+0.6
4,726,839	+		DDA3937_RS20800	0.85	-1.7
4,726,839	+		DDA3937_RS20800	0.85	-0.1
4,726,839	+		DDA3937_RS20800	0.85	-1.6
4,726,839	+		DDA3937_RS20800	0.85	-1.6
4,726,839	+		DDA3937_RS20800	0.85	+0.0
4,726,839	+		DDA3937_RS20800	0.85	-0.3
4,726,840	-		DDA3937_RS20800	0.85	+0.5
4,726,840	-		DDA3937_RS20800	0.85	-0.7
4,726,840	-		DDA3937_RS20800	0.85	-0.3
4,726,840	-		DDA3937_RS20800	0.85	-1.1
4,726,840	-		DDA3937_RS20800	0.85	-0.2
4,726,840	-		DDA3937_RS20800	0.85	-0.1
4,726,840	-		DDA3937_RS20800	0.85	-0.7
4,726,840	-		DDA3937_RS20800	0.85	-0.1
4,726,840	-		DDA3937_RS20800	0.85	-1.1
4,726,840	-		DDA3937_RS20800	0.85	-1.1
4,726,840	-		DDA3937_RS20800	0.85	-1.9
4,726,974	+				+0.8
4,726,975	-				+1.3
4,727,020	+				+0.3
4,727,044	-				-0.5
4,727,044	-				-1.1
4,727,047	+				-0.4
4,727,062	+				+0.2
4,727,062	+				+1.9
4,727,062	+				-0.1
4,727,062	+				-1.2
4,727,062	+				+2.4
4,727,063	-				-0.9
4,727,063	-				+0.9
4,727,063	-				-1.1
4,727,063	-				+1.5
4,727,063	-				+0.6
4,727,065	+				-0.6
4,727,065	+				-0.5
4,727,065	+				-0.9
4,727,065	+				+1.0
4,727,066	-				+0.4
4,727,066	-				+0.1
4,727,066	-				-2.3
4,727,066	-				+0.6
4,727,117	+				+0.3
4,727,118	-				-0.3
4,727,118	-				+0.7
4,727,118	-				+0.3
4,727,118	-				+0.2
4,727,118	-				+0.7
4,727,118	-				+1.5
4,727,181	-				-1.5
4,727,207	-				-0.4
4,727,507	+		DDA3937_RS20805	0.39	+0.1
4,727,558	+		DDA3937_RS20805	0.47	+0.3
4,727,561	+		DDA3937_RS20805	0.47	-0.5
4,727,561	+		DDA3937_RS20805	0.47	-0.8
4,727,561	+		DDA3937_RS20805	0.47	-0.2
4,727,562	-		DDA3937_RS20805	0.47	+0.1
4,727,672	+		DDA3937_RS20805	0.64	+0.1
4,727,672	+		DDA3937_RS20805	0.64	-0.5
4,727,672	+		DDA3937_RS20805	0.64	+0.5
4,727,774	-		DDA3937_RS20805	0.80	-0.3
4,727,855	+				-1.1
4,727,881	+				+5.0
4,727,881	+				-0.9
4,727,881	+				+1.9
4,727,882	-				-0.1
4,727,936	+				-0.3
4,727,937	-				-1.4
4,727,937	-				-0.3
4,727,937	-				+0.1
4,727,937	-				+0.5
4,727,971	+		DDA3937_RS20810	0.11	+4.9
4,727,971	+		DDA3937_RS20810	0.11	-0.3
4,727,972	-		DDA3937_RS20810	0.11	-0.6
4,727,988	+		DDA3937_RS20810	0.13	-0.9
4,727,988	+		DDA3937_RS20810	0.13	+0.5
4,727,988	+		DDA3937_RS20810	0.13	+0.8
4,727,989	-		DDA3937_RS20810	0.13	+1.7
4,728,074	-		DDA3937_RS20810	0.24	-1.0
4,728,147	+		DDA3937_RS20810	0.34	+1.4
4,728,147	+		DDA3937_RS20810	0.34	-1.2
4,728,148	-		DDA3937_RS20810	0.34	-0.6
4,728,148	-		DDA3937_RS20810	0.34	-0.0
4,728,148	-		DDA3937_RS20810	0.34	-0.5
4,728,148	-		DDA3937_RS20810	0.34	-0.2
4,728,148	-		DDA3937_RS20810	0.34	+1.5
4,728,148	-		DDA3937_RS20810	0.34	+0.4
4,728,263	-		DDA3937_RS20810	0.49	+0.0
4,728,340	+		DDA3937_RS20810	0.59	+0.5
4,728,340	+		DDA3937_RS20810	0.59	-0.3
4,728,341	-		DDA3937_RS20810	0.59	+0.1
4,728,353	+		DDA3937_RS20810	0.60	-2.0
4,728,353	+		DDA3937_RS20810	0.60	+2.6
4,728,419	+		DDA3937_RS20810	0.69	+0.5
4,728,575	+		DDA3937_RS20810	0.89	+0.3
4,728,575	+		DDA3937_RS20810	0.89	-0.8
4,728,576	-		DDA3937_RS20810	0.89	-1.2
4,728,576	-		DDA3937_RS20810	0.89	-0.5
4,728,576	-		DDA3937_RS20810	0.89	-1.4
4,728,576	-		DDA3937_RS20810	0.89	-1.5
4,728,592	-				+0.1
4,728,592	-				-0.9
4,728,635	+				+1.4
4,728,635	+				+0.4
4,728,636	-				+0.6
4,728,636	-				+0.4
4,728,754	+		DDA3937_RS20815	0.11	+1.8
4,728,754	+		DDA3937_RS20815	0.11	+0.3
4,728,755	-		DDA3937_RS20815	0.11	-2.9
4,728,755	-		DDA3937_RS20815	0.11	+1.0
4,728,815	+		DDA3937_RS20815	0.15	+0.4