Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20545 and DDA3937_RS20550 are separated by 6 nucleotides DDA3937_RS20550 and DDA3937_RS20555 are separated by 251 nucleotides DDA3937_RS20555 and DDA3937_RS20560 are separated by 4 nucleotides DDA3937_RS20560 and DDA3937_RS20565 are separated by 20 nucleotides
DDA3937_RS20545: DDA3937_RS20545 - DUF202 domain-containing protein, at 4,674,399 to 4,674,800
_RS20545
DDA3937_RS20550: DDA3937_RS20550 - DUF202 domain-containing protein, at 4,674,807 to 4,675,139
_RS20550
DDA3937_RS20555: DDA3937_RS20555 - DUF1611 domain-containing protein, at 4,675,391 to 4,676,398
_RS20555
DDA3937_RS20560: DDA3937_RS20560 - L-Ala-D/L-Glu epimerase, at 4,676,403 to 4,677,368
_RS20560
DDA3937_RS20565: DDA3937_RS20565 - ABC transporter ATP-binding protein, at 4,677,389 to 4,679,287
_RS20565
Position (kb) 4675
4676
4677 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4674.720 kb on + strand, within DDA3937_RS20545 at 4674.720 kb on + strand, within DDA3937_RS20545 at 4674.720 kb on + strand, within DDA3937_RS20545 at 4674.722 kb on + strand, within DDA3937_RS20545 at 4674.723 kb on - strand, within DDA3937_RS20545 at 4674.798 kb on + strand at 4674.798 kb on + strand at 4674.799 kb on - strand at 4674.799 kb on - strand at 4674.799 kb on - strand at 4674.811 kb on + strand at 4674.910 kb on + strand at 4674.910 kb on + strand, within DDA3937_RS20550 at 4674.910 kb on + strand, within DDA3937_RS20550 at 4674.910 kb on + strand, within DDA3937_RS20550 at 4674.910 kb on + strand, within DDA3937_RS20550 at 4674.910 kb on + strand, within DDA3937_RS20550 at 4674.910 kb on + strand, within DDA3937_RS20550 at 4674.911 kb on - strand, within DDA3937_RS20550 at 4674.911 kb on - strand, within DDA3937_RS20550 at 4674.911 kb on - strand, within DDA3937_RS20550 at 4674.911 kb on - strand, within DDA3937_RS20550 at 4674.911 kb on - strand, within DDA3937_RS20550 at 4674.988 kb on + strand, within DDA3937_RS20550 at 4674.996 kb on + strand, within DDA3937_RS20550 at 4674.996 kb on + strand, within DDA3937_RS20550 at 4674.996 kb on + strand, within DDA3937_RS20550 at 4674.996 kb on + strand, within DDA3937_RS20550 at 4674.996 kb on + strand, within DDA3937_RS20550 at 4674.996 kb on + strand, within DDA3937_RS20550 at 4674.996 kb on + strand, within DDA3937_RS20550 at 4674.996 kb on + strand, within DDA3937_RS20550 at 4674.996 kb on + strand, within DDA3937_RS20550 at 4674.997 kb on - strand, within DDA3937_RS20550 at 4674.997 kb on - strand at 4674.997 kb on - strand, within DDA3937_RS20550 at 4674.997 kb on - strand, within DDA3937_RS20550 at 4674.997 kb on - strand, within DDA3937_RS20550 at 4674.997 kb on - strand, within DDA3937_RS20550 at 4674.997 kb on - strand, within DDA3937_RS20550 at 4674.998 kb on + strand, within DDA3937_RS20550 at 4674.998 kb on + strand, within DDA3937_RS20550 at 4674.998 kb on + strand, within DDA3937_RS20550 at 4674.998 kb on + strand, within DDA3937_RS20550 at 4674.998 kb on + strand, within DDA3937_RS20550 at 4674.999 kb on - strand, within DDA3937_RS20550 at 4675.030 kb on + strand, within DDA3937_RS20550 at 4675.030 kb on + strand, within DDA3937_RS20550 at 4675.031 kb on - strand, within DDA3937_RS20550 at 4675.169 kb on + strand at 4675.170 kb on - strand at 4675.200 kb on + strand at 4675.213 kb on + strand at 4675.237 kb on + strand at 4675.244 kb on + strand at 4675.245 kb on - strand at 4675.275 kb on + strand at 4675.275 kb on + strand at 4675.277 kb on + strand at 4675.277 kb on + strand at 4675.290 kb on + strand at 4675.291 kb on - strand at 4675.291 kb on - strand at 4675.291 kb on - strand at 4675.291 kb on - strand at 4675.295 kb on + strand at 4675.295 kb on + strand at 4675.299 kb on + strand at 4675.299 kb on + strand at 4675.299 kb on + strand at 4675.299 kb on + strand at 4675.299 kb on + strand at 4675.299 kb on + strand at 4675.300 kb on - strand at 4675.300 kb on - strand at 4675.300 kb on - strand at 4675.301 kb on + strand at 4675.301 kb on + strand at 4675.301 kb on + strand at 4675.301 kb on + strand at 4675.302 kb on - strand at 4675.302 kb on - strand at 4675.338 kb on - strand at 4675.338 kb on - strand at 4675.338 kb on - strand at 4675.338 kb on - strand at 4675.343 kb on + strand at 4675.344 kb on - strand at 4675.344 kb on - strand at 4675.344 kb on - strand at 4675.357 kb on + strand at 4675.357 kb on + strand at 4675.357 kb on + strand at 4675.357 kb on + strand at 4675.357 kb on + strand at 4675.358 kb on - strand at 4675.358 kb on - strand at 4675.358 kb on - strand at 4675.376 kb on + strand at 4675.376 kb on + strand at 4675.376 kb on + strand at 4675.377 kb on - strand at 4675.377 kb on - strand at 4675.377 kb on - strand at 4675.377 kb on - strand at 4675.377 kb on - strand at 4675.377 kb on - strand at 4675.409 kb on + strand at 4675.409 kb on + strand at 4675.409 kb on + strand at 4675.410 kb on - strand at 4675.410 kb on - strand at 4675.495 kb on - strand, within DDA3937_RS20555 at 4675.495 kb on - strand, within DDA3937_RS20555 at 4675.495 kb on - strand, within DDA3937_RS20555 at 4675.549 kb on + strand, within DDA3937_RS20555 at 4675.740 kb on + strand, within DDA3937_RS20555 at 4675.740 kb on + strand, within DDA3937_RS20555 at 4675.740 kb on + strand, within DDA3937_RS20555 at 4675.741 kb on - strand at 4675.741 kb on - strand, within DDA3937_RS20555 at 4675.741 kb on - strand, within DDA3937_RS20555 at 4675.741 kb on - strand, within DDA3937_RS20555 at 4675.762 kb on + strand, within DDA3937_RS20555 at 4675.762 kb on + strand, within DDA3937_RS20555 at 4675.762 kb on + strand, within DDA3937_RS20555 at 4675.763 kb on - strand, within DDA3937_RS20555 at 4675.763 kb on - strand, within DDA3937_RS20555 at 4675.763 kb on - strand, within DDA3937_RS20555 at 4675.853 kb on + strand, within DDA3937_RS20555 at 4675.853 kb on + strand, within DDA3937_RS20555 at 4675.853 kb on + strand, within DDA3937_RS20555 at 4675.853 kb on + strand, within DDA3937_RS20555 at 4675.854 kb on - strand, within DDA3937_RS20555 at 4676.072 kb on + strand, within DDA3937_RS20555 at 4676.073 kb on - strand, within DDA3937_RS20555 at 4676.095 kb on + strand, within DDA3937_RS20555 at 4676.096 kb on - strand, within DDA3937_RS20555 at 4676.241 kb on + strand, within DDA3937_RS20555 at 4676.241 kb on + strand, within DDA3937_RS20555 at 4676.241 kb on + strand, within DDA3937_RS20555 at 4676.241 kb on + strand, within DDA3937_RS20555 at 4676.241 kb on + strand, within DDA3937_RS20555 at 4676.241 kb on + strand, within DDA3937_RS20555 at 4676.241 kb on + strand, within DDA3937_RS20555 at 4676.242 kb on - strand, within DDA3937_RS20555 at 4676.242 kb on - strand, within DDA3937_RS20555 at 4676.242 kb on - strand, within DDA3937_RS20555 at 4676.242 kb on - strand, within DDA3937_RS20555 at 4676.242 kb on - strand, within DDA3937_RS20555 at 4676.242 kb on - strand, within DDA3937_RS20555 at 4676.242 kb on - strand, within DDA3937_RS20555 at 4676.242 kb on - strand, within DDA3937_RS20555 at 4676.242 kb on - strand, within DDA3937_RS20555 at 4676.242 kb on - strand, within DDA3937_RS20555 at 4676.266 kb on + strand, within DDA3937_RS20555 at 4676.266 kb on + strand, within DDA3937_RS20555 at 4676.266 kb on + strand, within DDA3937_RS20555 at 4676.266 kb on + strand, within DDA3937_RS20555 at 4676.266 kb on + strand, within DDA3937_RS20555 at 4676.267 kb on - strand, within DDA3937_RS20555 at 4676.267 kb on - strand, within DDA3937_RS20555 at 4676.267 kb on - strand, within DDA3937_RS20555 at 4676.276 kb on + strand, within DDA3937_RS20555 at 4676.276 kb on + strand, within DDA3937_RS20555 at 4676.276 kb on + strand, within DDA3937_RS20555 at 4676.276 kb on + strand, within DDA3937_RS20555 at 4676.276 kb on + strand, within DDA3937_RS20555 at 4676.276 kb on + strand, within DDA3937_RS20555 at 4676.276 kb on + strand, within DDA3937_RS20555 at 4676.277 kb on - strand, within DDA3937_RS20555 at 4676.277 kb on - strand, within DDA3937_RS20555 at 4676.277 kb on - strand, within DDA3937_RS20555 at 4676.277 kb on - strand, within DDA3937_RS20555 at 4676.277 kb on - strand, within DDA3937_RS20555 at 4676.474 kb on + strand at 4676.609 kb on - strand, within DDA3937_RS20560 at 4677.090 kb on + strand, within DDA3937_RS20560 at 4677.091 kb on - strand, within DDA3937_RS20560 at 4677.201 kb on + strand, within DDA3937_RS20560 at 4677.333 kb on + strand at 4677.342 kb on + strand at 4677.342 kb on + strand at 4677.342 kb on + strand at 4677.342 kb on + strand at 4677.342 kb on + strand at 4677.342 kb on + strand at 4677.342 kb on + strand at 4677.342 kb on + strand at 4677.342 kb on + strand at 4677.342 kb on + strand at 4677.342 kb on + strand at 4677.342 kb on + strand at 4677.343 kb on - strand at 4677.343 kb on - strand at 4677.343 kb on - strand at 4677.344 kb on + strand at 4677.376 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,674,720 + DDA3937_RS20545 0.80 -1.5 4,674,720 + DDA3937_RS20545 0.80 -0.7 4,674,720 + DDA3937_RS20545 0.80 -0.1 4,674,722 + DDA3937_RS20545 0.80 -1.0 4,674,723 - DDA3937_RS20545 0.81 -1.2 4,674,798 + +0.0 4,674,798 + -0.6 4,674,799 - -0.1 4,674,799 - +0.7 4,674,799 - -0.4 4,674,811 + -0.4 4,674,910 + +0.5 4,674,910 + DDA3937_RS20550 0.31 -0.6 4,674,910 + DDA3937_RS20550 0.31 -2.2 4,674,910 + DDA3937_RS20550 0.31 -0.3 4,674,910 + DDA3937_RS20550 0.31 -0.6 4,674,910 + DDA3937_RS20550 0.31 +1.2 4,674,910 + DDA3937_RS20550 0.31 +0.3 4,674,911 - DDA3937_RS20550 0.31 -0.2 4,674,911 - DDA3937_RS20550 0.31 +0.4 4,674,911 - DDA3937_RS20550 0.31 -1.9 4,674,911 - DDA3937_RS20550 0.31 +0.7 4,674,911 - DDA3937_RS20550 0.31 -0.8 4,674,988 + DDA3937_RS20550 0.54 +0.2 4,674,996 + DDA3937_RS20550 0.57 +0.5 4,674,996 + DDA3937_RS20550 0.57 +0.3 4,674,996 + DDA3937_RS20550 0.57 -2.9 4,674,996 + DDA3937_RS20550 0.57 -0.4 4,674,996 + DDA3937_RS20550 0.57 -0.8 4,674,996 + DDA3937_RS20550 0.57 -2.0 4,674,996 + DDA3937_RS20550 0.57 -0.3 4,674,996 + DDA3937_RS20550 0.57 -1.1 4,674,996 + DDA3937_RS20550 0.57 -0.1 4,674,997 - DDA3937_RS20550 0.57 -0.0 4,674,997 - +1.5 4,674,997 - DDA3937_RS20550 0.57 -1.2 4,674,997 - DDA3937_RS20550 0.57 -1.7 4,674,997 - DDA3937_RS20550 0.57 -1.3 4,674,997 - DDA3937_RS20550 0.57 +0.2 4,674,997 - DDA3937_RS20550 0.57 -0.9 4,674,998 + DDA3937_RS20550 0.57 -1.3 4,674,998 + DDA3937_RS20550 0.57 +0.7 4,674,998 + DDA3937_RS20550 0.57 +2.5 4,674,998 + DDA3937_RS20550 0.57 +2.0 4,674,998 + DDA3937_RS20550 0.57 +2.3 4,674,999 - DDA3937_RS20550 0.58 +3.0 4,675,030 + DDA3937_RS20550 0.67 -0.2 4,675,030 + DDA3937_RS20550 0.67 -0.5 4,675,031 - DDA3937_RS20550 0.67 +2.2 4,675,169 + -1.2 4,675,170 - -1.5 4,675,200 + +0.0 4,675,213 + -0.6 4,675,237 + +0.5 4,675,244 + +0.0 4,675,245 - +2.0 4,675,275 + +0.9 4,675,275 + -0.5 4,675,277 + -1.4 4,675,277 + -0.2 4,675,290 + -1.6 4,675,291 - -0.5 4,675,291 - -0.7 4,675,291 - +0.5 4,675,291 - -1.0 4,675,295 + -0.2 4,675,295 + -0.5 4,675,299 + -0.7 4,675,299 + +1.0 4,675,299 + +0.2 4,675,299 + +0.5 4,675,299 + -1.0 4,675,299 + -0.1 4,675,300 - -0.3 4,675,300 - +0.9 4,675,300 - +0.0 4,675,301 + -0.8 4,675,301 + -0.1 4,675,301 + +1.0 4,675,301 + -0.1 4,675,302 - -0.3 4,675,302 - -0.7 4,675,338 - -0.2 4,675,338 - -0.1 4,675,338 - +0.0 4,675,338 - +0.2 4,675,343 + +0.7 4,675,344 - -0.5 4,675,344 - +1.4 4,675,344 - +0.5 4,675,357 + +0.2 4,675,357 + +0.2 4,675,357 + -0.2 4,675,357 + +0.6 4,675,357 + -0.7 4,675,358 - +0.7 4,675,358 - +0.0 4,675,358 - -0.3 4,675,376 + -1.1 4,675,376 + -0.1 4,675,376 + +0.7 4,675,377 - -0.2 4,675,377 - +0.5 4,675,377 - -0.6 4,675,377 - +0.5 4,675,377 - -0.3 4,675,377 - -0.9 4,675,409 + +0.1 4,675,409 + -0.0 4,675,409 + +0.5 4,675,410 - -0.8 4,675,410 - -1.0 4,675,495 - DDA3937_RS20555 0.10 -1.5 4,675,495 - DDA3937_RS20555 0.10 -0.1 4,675,495 - DDA3937_RS20555 0.10 -0.8 4,675,549 + DDA3937_RS20555 0.16 +0.2 4,675,740 + DDA3937_RS20555 0.35 +1.0 4,675,740 + DDA3937_RS20555 0.35 +0.2 4,675,740 + DDA3937_RS20555 0.35 +0.1 4,675,741 - +3.0 4,675,741 - DDA3937_RS20555 0.35 -0.5 4,675,741 - DDA3937_RS20555 0.35 +1.9 4,675,741 - DDA3937_RS20555 0.35 +0.5 4,675,762 + DDA3937_RS20555 0.37 +1.5 4,675,762 + DDA3937_RS20555 0.37 +0.2 4,675,762 + DDA3937_RS20555 0.37 -0.6 4,675,763 - DDA3937_RS20555 0.37 -0.3 4,675,763 - DDA3937_RS20555 0.37 -0.0 4,675,763 - DDA3937_RS20555 0.37 -0.6 4,675,853 + DDA3937_RS20555 0.46 -0.0 4,675,853 + DDA3937_RS20555 0.46 +0.7 4,675,853 + DDA3937_RS20555 0.46 -0.1 4,675,853 + DDA3937_RS20555 0.46 -0.9 4,675,854 - DDA3937_RS20555 0.46 -0.0 4,676,072 + DDA3937_RS20555 0.68 +0.2 4,676,073 - DDA3937_RS20555 0.68 +0.3 4,676,095 + DDA3937_RS20555 0.70 +0.3 4,676,096 - DDA3937_RS20555 0.70 -0.6 4,676,241 + DDA3937_RS20555 0.84 -1.1 4,676,241 + DDA3937_RS20555 0.84 -0.1 4,676,241 + DDA3937_RS20555 0.84 -0.4 4,676,241 + DDA3937_RS20555 0.84 +1.4 4,676,241 + DDA3937_RS20555 0.84 -0.9 4,676,241 + DDA3937_RS20555 0.84 +0.1 4,676,241 + DDA3937_RS20555 0.84 -0.7 4,676,242 - DDA3937_RS20555 0.84 +0.5 4,676,242 - DDA3937_RS20555 0.84 +0.9 4,676,242 - DDA3937_RS20555 0.84 -0.4 4,676,242 - DDA3937_RS20555 0.84 -2.5 4,676,242 - DDA3937_RS20555 0.84 +0.7 4,676,242 - DDA3937_RS20555 0.84 -1.9 4,676,242 - DDA3937_RS20555 0.84 +0.4 4,676,242 - DDA3937_RS20555 0.84 -0.0 4,676,242 - DDA3937_RS20555 0.84 +0.8 4,676,242 - DDA3937_RS20555 0.84 +0.9 4,676,266 + DDA3937_RS20555 0.87 -0.3 4,676,266 + DDA3937_RS20555 0.87 +1.2 4,676,266 + DDA3937_RS20555 0.87 -1.0 4,676,266 + DDA3937_RS20555 0.87 +1.3 4,676,266 + DDA3937_RS20555 0.87 -0.4 4,676,267 - DDA3937_RS20555 0.87 -0.6 4,676,267 - DDA3937_RS20555 0.87 -0.3 4,676,267 - DDA3937_RS20555 0.87 -1.3 4,676,276 + DDA3937_RS20555 0.88 +0.6 4,676,276 + DDA3937_RS20555 0.88 +0.7 4,676,276 + DDA3937_RS20555 0.88 +0.2 4,676,276 + DDA3937_RS20555 0.88 +0.1 4,676,276 + DDA3937_RS20555 0.88 -0.1 4,676,276 + DDA3937_RS20555 0.88 -0.7 4,676,276 + DDA3937_RS20555 0.88 -0.3 4,676,277 - DDA3937_RS20555 0.88 -0.5 4,676,277 - DDA3937_RS20555 0.88 -0.3 4,676,277 - DDA3937_RS20555 0.88 -0.5 4,676,277 - DDA3937_RS20555 0.88 -0.6 4,676,277 - DDA3937_RS20555 0.88 -1.5 4,676,474 + +1.3 4,676,609 - DDA3937_RS20560 0.21 +0.5 4,677,090 + DDA3937_RS20560 0.71 -0.1 4,677,091 - DDA3937_RS20560 0.71 -0.2 4,677,201 + DDA3937_RS20560 0.83 -0.7 4,677,333 + -0.3 4,677,342 + +0.6 4,677,342 + +0.3 4,677,342 + +0.9 4,677,342 + -1.1 4,677,342 + +0.5 4,677,342 + +0.8 4,677,342 + +1.9 4,677,342 + -0.2 4,677,342 + +5.2 4,677,342 + +1.0 4,677,342 + -0.1 4,677,342 + -0.5 4,677,343 - -0.9 4,677,343 - +0.3 4,677,343 - +0.0 4,677,344 + +0.3 4,677,376 + -0.1
Or see this region's nucleotide sequence