Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20540

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,672,516	+		DDA3937_RS20530	0.72	-0.5
4,672,516	+		DDA3937_RS20530	0.72	-1.2
4,672,516	+		DDA3937_RS20530	0.72	-1.1
4,672,516	+		DDA3937_RS20530	0.72	-0.0
4,672,517	-		DDA3937_RS20530	0.72	+0.9
4,672,517	-		DDA3937_RS20530	0.72	-2.5
4,672,517	-		DDA3937_RS20530	0.72	-0.6
4,672,517	-		DDA3937_RS20530	0.72	-2.2
4,672,517	-		DDA3937_RS20530	0.72	-1.4
4,672,517	-		DDA3937_RS20530	0.72	-1.7
4,672,682	+				-0.1
4,672,715	+				-0.7
4,672,716	-				+0.7
4,672,716	-				-1.5
4,672,716	-				+0.6
4,672,729	+				+0.4
4,672,751	+				-0.8
4,672,752	-				-0.5
4,672,823	+		DDA3937_RS20535	0.11	+0.0
4,672,823	+		DDA3937_RS20535	0.11	-2.5
4,672,823	+		DDA3937_RS20535	0.11	-0.7
4,672,824	-		DDA3937_RS20535	0.12	-3.6
4,672,824	-				+0.9
4,672,824	-		DDA3937_RS20535	0.12	-1.0
4,672,827	+		DDA3937_RS20535	0.12	+0.5
4,672,827	+		DDA3937_RS20535	0.12	-2.8
4,672,827	+		DDA3937_RS20535	0.12	+0.3
4,672,828	-		DDA3937_RS20535	0.12	-3.0
4,672,828	-		DDA3937_RS20535	0.12	+0.1
4,672,828	-		DDA3937_RS20535	0.12	-1.1
4,672,848	+		DDA3937_RS20535	0.15	-1.7
4,672,848	+		DDA3937_RS20535	0.15	-1.1
4,672,848	+		DDA3937_RS20535	0.15	-1.5
4,672,849	-		DDA3937_RS20535	0.15	-0.2
4,672,849	-		DDA3937_RS20535	0.15	-1.0
4,672,849	-		DDA3937_RS20535	0.15	-3.3
4,672,849	-		DDA3937_RS20535	0.15	-0.9
4,672,849	-		DDA3937_RS20535	0.15	-1.9
4,672,882	+		DDA3937_RS20535	0.21	-0.4
4,673,034	+		DDA3937_RS20535	0.44	-0.4
4,673,034	+		DDA3937_RS20535	0.44	-3.2
4,673,034	+		DDA3937_RS20535	0.44	-3.2
4,673,035	-		DDA3937_RS20535	0.44	-0.5
4,673,035	-		DDA3937_RS20535	0.44	-2.4
4,673,035	-		DDA3937_RS20535	0.44	-0.5
4,673,109	-		DDA3937_RS20535	0.56	-1.5
4,673,177	+		DDA3937_RS20535	0.67	-3.2
4,673,194	+		DDA3937_RS20535	0.69	-1.5
4,673,194	+		DDA3937_RS20535	0.69	-2.7
4,673,194	+		DDA3937_RS20535	0.69	-1.5
4,673,194	+		DDA3937_RS20535	0.69	-1.5
4,673,195	-		DDA3937_RS20535	0.69	-2.6
4,673,234	+		DDA3937_RS20535	0.75	-2.0
4,673,234	+		DDA3937_RS20535	0.75	-0.7
4,673,234	+		DDA3937_RS20535	0.75	-1.2
4,673,234	+		DDA3937_RS20535	0.75	-0.1
4,673,234	+		DDA3937_RS20535	0.75	-1.8
4,673,235	-		DDA3937_RS20535	0.76	-0.1
4,673,235	-		DDA3937_RS20535	0.76	-2.2
4,673,235	-		DDA3937_RS20535	0.76	+2.1
4,673,235	-		DDA3937_RS20535	0.76	+0.5
4,673,235	-		DDA3937_RS20535	0.76	-1.0
4,673,235	-		DDA3937_RS20535	0.76	-1.5
4,673,255	-		DDA3937_RS20535	0.79	-0.5
4,673,294	+		DDA3937_RS20535	0.85	-1.2
4,673,294	+		DDA3937_RS20535	0.85	-1.5
4,673,322	+		DDA3937_RS20535	0.89	-1.5
4,673,381	+				-2.1
4,673,381	+				-1.7
4,673,382	-				-0.1
4,673,382	-				-2.1
4,673,448	+				-2.0
4,673,448	+				-0.6
4,673,448	+				-0.3
4,673,448	+				-0.9
4,673,448	+				-0.2
4,673,448	+				-1.5
4,673,448	+				-2.0
4,673,448	+				-0.7
4,673,448	+				-0.7
4,673,448	+				-0.4
4,673,448	+				-1.3
4,673,448	+				-0.5
4,673,449	-				+0.9
4,673,449	-				-1.1
4,673,449	-				-1.2
4,673,449	-				-1.0
4,673,449	-				-2.1
4,673,449	-				-0.9
4,673,449	-				-0.4
4,673,449	-				-1.1
4,673,449	-				-1.2
4,673,449	-				-0.7
4,673,449	-				-0.5
4,673,449	-				-0.7
4,673,449	-				-1.6
4,673,449	-				+0.1
4,673,453	+				-0.7
4,673,453	+				+0.5
4,673,454	-				+0.4
4,673,468	+				-0.1
4,673,469	-				-0.4
4,673,469	-				-0.7
4,673,469	-				-1.3
4,673,689	+		DDA3937_RS20540	0.26	+1.0
4,673,689	+		DDA3937_RS20540	0.26	-1.9
4,673,689	+		DDA3937_RS20540	0.26	+0.8
4,673,689	+				+0.7
4,673,690	-		DDA3937_RS20540	0.26	+0.7
4,673,690	-		DDA3937_RS20540	0.26	-1.5
4,673,733	+		DDA3937_RS20540	0.32	-0.8
4,673,733	+		DDA3937_RS20540	0.32	-0.3
4,673,733	+		DDA3937_RS20540	0.32	+0.6
4,673,734	-		DDA3937_RS20540	0.32	-1.4
4,673,734	-		DDA3937_RS20540	0.32	+1.0
4,673,882	+		DDA3937_RS20540	0.53	+1.9
4,673,882	+		DDA3937_RS20540	0.53	+0.4
4,673,882	+		DDA3937_RS20540	0.53	+0.9
4,673,882	+		DDA3937_RS20540	0.53	-0.5
4,673,882	+		DDA3937_RS20540	0.53	-0.1
4,673,882	+		DDA3937_RS20540	0.53	-1.1
4,673,882	+		DDA3937_RS20540	0.53	-0.0
4,673,882	+		DDA3937_RS20540	0.53	+1.8
4,673,882	+		DDA3937_RS20540	0.53	-1.1
4,673,883	-		DDA3937_RS20540	0.53	-0.0
4,673,883	-		DDA3937_RS20540	0.53	-0.9
4,673,883	-		DDA3937_RS20540	0.53	+1.3
4,673,883	-		DDA3937_RS20540	0.53	-1.1
4,673,883	-		DDA3937_RS20540	0.53	+1.3
4,673,883	-		DDA3937_RS20540	0.53	+0.0
4,673,883	-		DDA3937_RS20540	0.53	+1.1
4,673,890	+		DDA3937_RS20540	0.54	-1.1
4,673,891	-		DDA3937_RS20540	0.54	-1.1
4,673,891	-		DDA3937_RS20540	0.54	-0.3
4,673,891	-		DDA3937_RS20540	0.54	+0.5
4,673,960	+		DDA3937_RS20540	0.64	+1.6
4,674,012	-		DDA3937_RS20540	0.71	-1.7
4,674,026	+		DDA3937_RS20540	0.73	+0.2
4,674,026	+		DDA3937_RS20540	0.73	-0.5
4,674,026	+		DDA3937_RS20540	0.73	+2.4
4,674,027	-		DDA3937_RS20540	0.73	-1.1
4,674,027	-		DDA3937_RS20540	0.73	-1.4
4,674,027	-		DDA3937_RS20540	0.73	-0.9
4,674,027	-		DDA3937_RS20540	0.73	+0.3
4,674,031	+		DDA3937_RS20540	0.74	+0.9
4,674,032	-		DDA3937_RS20540	0.74	+0.2
4,674,090	+		DDA3937_RS20540	0.82	-1.0
4,674,090	+		DDA3937_RS20540	0.82	+0.5
4,674,091	-		DDA3937_RS20540	0.82	-1.4
4,674,242	+				-1.6
4,674,243	-				-0.6
4,674,243	-				-0.1
4,674,257	+				-1.1
4,674,257	+				-0.5
4,674,257	+				-1.4
4,674,258	-				-0.3
4,674,258	-				-0.8
4,674,258	-				+1.5
4,674,259	+				-1.4
4,674,260	-				-1.0
4,674,365	+				+0.5
4,674,365	+				+0.1
4,674,365	+				+0.7
4,674,365	+				-0.9
4,674,365	+				-0.5
4,674,365	+				+0.3
4,674,365	+				-1.5
4,674,365	+				-0.7
4,674,366	-				-0.1
4,674,366	-				+0.1
4,674,366	-				-0.3
4,674,383	+				-0.4
4,674,720	+		DDA3937_RS20545	0.80	-1.5
4,674,720	+		DDA3937_RS20545	0.80	-0.7
4,674,720	+		DDA3937_RS20545	0.80	-0.1
4,674,722	+		DDA3937_RS20545	0.80	-1.0
4,674,723	-		DDA3937_RS20545	0.81	-1.2
4,674,798	+				+0.0
4,674,798	+				-0.6
4,674,799	-				-0.1
4,674,799	-				+0.7
4,674,799	-				-0.4
4,674,811	+				-0.4
4,674,910	+				+0.5
4,674,910	+		DDA3937_RS20550	0.31	-0.6
4,674,910	+		DDA3937_RS20550	0.31	-2.2
4,674,910	+		DDA3937_RS20550	0.31	-0.3
4,674,910	+		DDA3937_RS20550	0.31	-0.6
4,674,910	+		DDA3937_RS20550	0.31	+1.2
4,674,910	+		DDA3937_RS20550	0.31	+0.3
4,674,911	-		DDA3937_RS20550	0.31	-0.2
4,674,911	-		DDA3937_RS20550	0.31	+0.4
4,674,911	-		DDA3937_RS20550	0.31	-1.9
4,674,911	-		DDA3937_RS20550	0.31	+0.7
4,674,911	-		DDA3937_RS20550	0.31	-0.8
4,674,988	+		DDA3937_RS20550	0.54	+0.2
4,674,996	+		DDA3937_RS20550	0.57	+0.5
4,674,996	+		DDA3937_RS20550	0.57	+0.3
4,674,996	+		DDA3937_RS20550	0.57	-2.9
4,674,996	+		DDA3937_RS20550	0.57	-0.4
4,674,996	+		DDA3937_RS20550	0.57	-0.8
4,674,996	+		DDA3937_RS20550	0.57	-2.0
4,674,996	+		DDA3937_RS20550	0.57	-0.3
4,674,996	+		DDA3937_RS20550	0.57	-1.1
4,674,996	+		DDA3937_RS20550	0.57	-0.1
4,674,997	-		DDA3937_RS20550	0.57	-0.0
4,674,997	-				+1.5
4,674,997	-		DDA3937_RS20550	0.57	-1.2
4,674,997	-		DDA3937_RS20550	0.57	-1.7
4,674,997	-		DDA3937_RS20550	0.57	-1.3
4,674,997	-		DDA3937_RS20550	0.57	+0.2
4,674,997	-		DDA3937_RS20550	0.57	-0.9
4,674,998	+		DDA3937_RS20550	0.57	-1.3
4,674,998	+		DDA3937_RS20550	0.57	+0.7
4,674,998	+		DDA3937_RS20550	0.57	+2.5
4,674,998	+		DDA3937_RS20550	0.57	+2.0
4,674,998	+		DDA3937_RS20550	0.57	+2.3
4,674,999	-		DDA3937_RS20550	0.58	+3.0
4,675,030	+		DDA3937_RS20550	0.67	-0.2
4,675,030	+		DDA3937_RS20550	0.67	-0.5
4,675,031	-		DDA3937_RS20550	0.67	+2.2
4,675,169	+				-1.2
4,675,170	-				-1.5
4,675,200	+				+0.0
4,675,213	+				-0.6