Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19115

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,370,299	-				-1.1
4,370,314	-				-1.6
4,370,316	-				+1.4
4,370,368	-				+1.1
4,370,368	-				-0.5
4,370,368	-				-0.2
4,370,368	-				+0.3
4,370,368	-				+0.0
4,370,461	-		DDA3937_RS22495	0.26	+0.6
4,370,469	+		DDA3937_RS22495	0.27	-0.4
4,370,469	+		DDA3937_RS22495	0.27	+0.0
4,370,470	-		DDA3937_RS22495	0.27	-1.0
4,370,516	+		DDA3937_RS22495	0.35	-0.7
4,370,526	+		DDA3937_RS22495	0.37	+0.1
4,370,526	+		DDA3937_RS22495	0.37	+2.4
4,370,601	+		DDA3937_RS22495	0.51	-0.7
4,370,601	+		DDA3937_RS22495	0.51	+0.5
4,370,602	-		DDA3937_RS22495	0.51	+0.0
4,370,602	-		DDA3937_RS22495	0.51	-0.1
4,370,619	-		DDA3937_RS22495	0.54	-0.0
4,370,619	-		DDA3937_RS22495	0.54	+0.8
4,370,619	-		DDA3937_RS22495	0.54	+2.5
4,370,622	+		DDA3937_RS22495	0.54	-0.0
4,370,622	+		DDA3937_RS22495	0.54	-0.7
4,370,622	+		DDA3937_RS22495	0.54	+1.4
4,370,622	+		DDA3937_RS22495	0.54	-0.3
4,370,622	+		DDA3937_RS22495	0.54	+1.2
4,370,622	+				-0.6
4,370,623	-		DDA3937_RS22495	0.55	+0.1
4,370,623	-		DDA3937_RS22495	0.55	-0.3
4,370,623	-		DDA3937_RS22495	0.55	-0.8
4,370,623	-		DDA3937_RS22495	0.55	-2.0
4,370,623	-		DDA3937_RS22495	0.55	-1.0
4,370,729	+		DDA3937_RS22495	0.73	+0.2
4,370,730	-		DDA3937_RS22495	0.74	-0.5
4,370,736	+		DDA3937_RS22495	0.75	-0.4
4,370,748	+		DDA3937_RS22495	0.77	+1.9
4,370,748	+		DDA3937_RS22495	0.77	+0.5
4,370,750	+		DDA3937_RS22495	0.77	+0.4
4,370,750	+		DDA3937_RS22495	0.77	-0.2
4,370,751	-		DDA3937_RS22495	0.77	+0.3
4,370,751	-		DDA3937_RS22495	0.77	-2.0
4,370,751	-		DDA3937_RS22495	0.77	-0.6
4,370,751	-		DDA3937_RS22495	0.77	+0.9
4,370,751	-		DDA3937_RS22495	0.77	+0.1
4,370,751	-		DDA3937_RS22495	0.77	-0.0
4,370,859	+				+0.1
4,370,859	+				-0.1
4,370,859	+				-0.6
4,370,859	+				+0.6
4,370,859	+				-0.8
4,370,859	+				-0.9
4,370,859	+				-1.8
4,370,859	+				+0.6
4,370,859	+				+0.1
4,370,860	-				-0.5
4,370,860	-				-1.3
4,370,860	-				+0.1
4,370,860	-				+0.1
4,370,860	-				-1.6
4,370,860	-				+1.7
4,370,863	+				-2.0
4,370,863	+				+0.0
4,370,864	-				-0.1
4,370,864	-				+0.3
4,370,883	-				+0.6
4,370,883	-				-0.2
4,370,883	-				+0.2
4,370,908	-				-1.0
4,370,930	+				-0.6
4,370,930	+				-0.3
4,370,931	-				+1.0
4,370,950	-		DDA3937_RS19115	0.11	-1.1
4,370,950	-		DDA3937_RS19115	0.11	+0.4
4,370,978	+		DDA3937_RS19115	0.17	+2.0
4,370,978	+		DDA3937_RS19115	0.17	-0.7
4,371,003	-		DDA3937_RS19115	0.23	-0.2
4,371,085	+		DDA3937_RS19115	0.40	+0.4
4,371,085	+		DDA3937_RS19115	0.40	+0.0
4,371,086	-		DDA3937_RS19115	0.40	+0.5
4,371,086	-		DDA3937_RS19115	0.40	+0.9
4,371,086	-		DDA3937_RS19115	0.40	-0.8
4,371,153	+		DDA3937_RS19115	0.55	-0.2
4,371,243	+		DDA3937_RS19115	0.74	+1.6
4,371,243	+		DDA3937_RS19115	0.74	-0.7
4,371,243	+		DDA3937_RS19115	0.74	+0.1
4,371,244	-		DDA3937_RS19115	0.74	-0.8
4,371,244	-		DDA3937_RS19115	0.74	+0.3
4,371,292	+		DDA3937_RS19115	0.84	+0.7
4,371,292	+		DDA3937_RS19115	0.84	-0.9
4,371,292	+		DDA3937_RS19115	0.84	+0.3
4,371,292	+		DDA3937_RS19115	0.84	+0.2
4,371,292	+		DDA3937_RS19115	0.84	+2.4
4,371,292	+		DDA3937_RS19115	0.84	-0.4
4,371,292	+		DDA3937_RS19115	0.84	+1.4
4,371,293	-		DDA3937_RS19115	0.85	+1.6
4,371,293	-		DDA3937_RS19115	0.85	+0.5
4,371,293	-		DDA3937_RS19115	0.85	-0.9
4,371,293	-		DDA3937_RS19115	0.85	+0.4
4,371,330	+				-0.5
4,371,330	+				-1.2
4,371,331	-				-1.0
4,371,331	-				-0.3
4,371,331	-				+1.3
4,371,345	+				-0.2
4,371,345	+				-0.6
4,371,346	-				+0.9
4,371,346	-				-0.5
4,371,346	-				+0.9
4,371,346	-				-0.6
4,371,346	-				-0.0
4,371,346	-				+1.4
4,371,353	+				-0.6
4,371,353	+				+1.3
4,371,353	+				+0.6
4,371,354	-				+2.4
4,371,354	-				-0.4
4,371,354	-				+0.6
4,371,354	-				+1.1
4,371,354	-				+1.0
4,371,354	-				+2.7
4,371,354	-				+0.3
4,371,354	-				-0.6
4,371,378	+				-1.3
4,371,379	-				-1.8
4,371,379	-				-2.2
4,371,380	+				-0.6
4,371,380	+				+1.4
4,371,380	+				-0.3
4,371,380	+				-0.1
4,371,380	+				-0.5
4,371,381	-				-0.6
4,371,420	+				+0.0
4,371,420	+				-0.1
4,371,421	-				-0.7
4,371,440	+				-0.7
4,371,440	+				-0.0
4,371,440	+				+0.7
4,371,440	+				-0.5
4,371,441	-				-0.8
4,371,441	-				+0.4
4,371,441	-				-0.9
4,371,497	+		DDA3937_RS19120	0.14	-0.5
4,371,497	+		DDA3937_RS19120	0.14	-2.3
4,371,498	-		DDA3937_RS19120	0.14	-0.4
4,371,498	-		DDA3937_RS19120	0.14	-0.5
4,371,511	-		DDA3937_RS19120	0.15	+0.0
4,371,511	-		DDA3937_RS19120	0.15	+0.2
4,371,511	-		DDA3937_RS19120	0.15	+0.5
4,371,511	-		DDA3937_RS19120	0.15	-0.5
4,371,566	+		DDA3937_RS19120	0.20	+0.3
4,371,672	+		DDA3937_RS19120	0.30	-0.7
4,371,672	+		DDA3937_RS19120	0.30	+0.6
4,371,686	+		DDA3937_RS19120	0.31	-0.1
4,371,729	+		DDA3937_RS19120	0.35	-0.9
4,371,729	+		DDA3937_RS19120	0.35	+0.2
4,371,730	-		DDA3937_RS19120	0.35	+0.1
4,371,755	-		DDA3937_RS19120	0.37	-1.3
4,371,755	-		DDA3937_RS19120	0.37	-0.0
4,371,816	+		DDA3937_RS19120	0.42	-0.6
4,371,830	+		DDA3937_RS19120	0.44	+1.3
4,371,830	+		DDA3937_RS19120	0.44	-0.9
4,371,869	+		DDA3937_RS19120	0.47	+1.0
4,371,914	+		DDA3937_RS19120	0.51	+1.4
4,371,914	+		DDA3937_RS19120	0.51	+2.3
4,371,914	+		DDA3937_RS19120	0.51	-0.3
4,371,914	+		DDA3937_RS19120	0.51	-0.3
4,371,914	+		DDA3937_RS19120	0.51	-1.8
4,371,915	-		DDA3937_RS19120	0.51	+0.4
4,371,915	-		DDA3937_RS19120	0.51	+0.8
4,371,957	+		DDA3937_RS19120	0.55	-2.5
4,371,957	+		DDA3937_RS19120	0.55	+1.0
4,372,019	+		DDA3937_RS19120	0.60	-0.2
4,372,019	+		DDA3937_RS19120	0.60	-0.2
4,372,020	-		DDA3937_RS19120	0.60	-0.1
4,372,020	-		DDA3937_RS19120	0.60	+0.1
4,372,038	+		DDA3937_RS19120	0.62	+1.1
4,372,039	-		DDA3937_RS19120	0.62	+0.8
4,372,051	-		DDA3937_RS19120	0.63	+0.4
4,372,070	+		DDA3937_RS19120	0.65	-1.9
4,372,070	+		DDA3937_RS19120	0.65	-1.1
4,372,071	-		DDA3937_RS19120	0.65	+0.2
4,372,071	-		DDA3937_RS19120	0.65	-1.5
4,372,115	+		DDA3937_RS19120	0.69	-0.6
4,372,115	+		DDA3937_RS19120	0.69	+0.0
4,372,116	-		DDA3937_RS19120	0.69	-0.4
4,372,158	+		DDA3937_RS19120	0.72	-0.7
4,372,159	-		DDA3937_RS19120	0.73	-0.2
4,372,159	-		DDA3937_RS19120	0.73	-0.7
4,372,180	+		DDA3937_RS19120	0.74	-1.9
4,372,180	+		DDA3937_RS19120	0.74	-0.5
4,372,180	+		DDA3937_RS19120	0.74	+0.3
4,372,181	-		DDA3937_RS19120	0.75	+0.6
4,372,181	-		DDA3937_RS19120	0.75	+0.3
4,372,181	-		DDA3937_RS19120	0.75	+0.5
4,372,181	-		DDA3937_RS19120	0.75	+0.1
4,372,181	-		DDA3937_RS19120	0.75	-0.7
4,372,181	-		DDA3937_RS19120	0.75	-1.9
4,372,181	-		DDA3937_RS19120	0.75	-1.6
4,372,181	-		DDA3937_RS19120	0.75	+0.1
4,372,188	+		DDA3937_RS19120	0.75	+1.4
4,372,189	-		DDA3937_RS19120	0.75	+0.3
4,372,189	-		DDA3937_RS19120	0.75	-1.1
4,372,189	-		DDA3937_RS19120	0.75	+1.4
4,372,189	-		DDA3937_RS19120	0.75	-0.1
4,372,189	-		DDA3937_RS19120	0.75	-3.5
4,372,208	+		DDA3937_RS19120	0.77	-0.6
4,372,283	+		DDA3937_RS19120	0.84	+1.1
4,372,283	+		DDA3937_RS19120	0.84	-1.4
4,372,283	+		DDA3937_RS19120	0.84	-1.1
4,372,283	+		DDA3937_RS19120	0.84	+0.1
4,372,283	+		DDA3937_RS19120	0.84	-0.2
4,372,284	-		DDA3937_RS19120	0.84	-1.0
4,372,358	-				-1.1