Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18785 and DDA3937_RS18790 are separated by 367 nucleotides DDA3937_RS18790 and DDA3937_RS18795 are separated by 808 nucleotides
DDA3937_RS18785: DDA3937_RS18785 - Tar ligand binding domain-containing protein, at 4,290,964 to 4,292,634
_RS18785
DDA3937_RS18790: DDA3937_RS18790 - IS110-like element ISEch3 family transposase, at 4,293,002 to 4,294,021
_RS18790
DDA3937_RS18795: DDA3937_RS18795 - nitrogen fixation protein NifQ, at 4,294,830 to 4,295,351
_RS18795
Position (kb) 4293
4294
4295 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 4292.004 kb on - strand, within DDA3937_RS18785 at 4292.004 kb on - strand, within DDA3937_RS18785 at 4292.017 kb on + strand, within DDA3937_RS18785 at 4292.017 kb on + strand, within DDA3937_RS18785 at 4292.018 kb on - strand, within DDA3937_RS18785 at 4292.064 kb on + strand, within DDA3937_RS18785 at 4292.064 kb on + strand, within DDA3937_RS18785 at 4292.064 kb on + strand, within DDA3937_RS18785 at 4292.064 kb on + strand, within DDA3937_RS18785 at 4292.065 kb on - strand, within DDA3937_RS18785 at 4292.072 kb on + strand at 4292.072 kb on + strand, within DDA3937_RS18785 at 4292.073 kb on - strand, within DDA3937_RS18785 at 4292.073 kb on - strand, within DDA3937_RS18785 at 4292.073 kb on - strand, within DDA3937_RS18785 at 4292.073 kb on - strand, within DDA3937_RS18785 at 4292.074 kb on + strand, within DDA3937_RS18785 at 4292.075 kb on - strand, within DDA3937_RS18785 at 4292.122 kb on - strand, within DDA3937_RS18785 at 4292.130 kb on + strand, within DDA3937_RS18785 at 4292.132 kb on + strand, within DDA3937_RS18785 at 4292.132 kb on + strand, within DDA3937_RS18785 at 4292.133 kb on - strand, within DDA3937_RS18785 at 4292.174 kb on + strand, within DDA3937_RS18785 at 4292.198 kb on + strand, within DDA3937_RS18785 at 4292.199 kb on - strand, within DDA3937_RS18785 at 4292.199 kb on - strand, within DDA3937_RS18785 at 4292.211 kb on + strand, within DDA3937_RS18785 at 4292.212 kb on - strand, within DDA3937_RS18785 at 4292.212 kb on - strand, within DDA3937_RS18785 at 4292.265 kb on - strand, within DDA3937_RS18785 at 4292.272 kb on - strand, within DDA3937_RS18785 at 4292.272 kb on - strand, within DDA3937_RS18785 at 4292.272 kb on - strand, within DDA3937_RS18785 at 4292.276 kb on + strand, within DDA3937_RS18785 at 4292.277 kb on - strand, within DDA3937_RS18785 at 4292.277 kb on - strand, within DDA3937_RS18785 at 4292.280 kb on + strand, within DDA3937_RS18785 at 4292.305 kb on - strand, within DDA3937_RS18785 at 4292.305 kb on - strand, within DDA3937_RS18785 at 4292.376 kb on + strand, within DDA3937_RS18785 at 4292.439 kb on + strand, within DDA3937_RS18785 at 4292.440 kb on - strand, within DDA3937_RS18785 at 4292.447 kb on + strand, within DDA3937_RS18785 at 4292.447 kb on + strand, within DDA3937_RS18785 at 4292.448 kb on - strand, within DDA3937_RS18785 at 4292.472 kb on + strand at 4292.473 kb on - strand at 4292.485 kb on - strand at 4292.538 kb on - strand at 4292.570 kb on - strand at 4292.574 kb on + strand at 4292.574 kb on + strand at 4292.575 kb on - strand at 4292.578 kb on + strand at 4292.578 kb on + strand at 4292.578 kb on + strand at 4292.578 kb on + strand at 4292.579 kb on - strand at 4292.625 kb on + strand at 4292.626 kb on - strand at 4292.637 kb on - strand at 4292.698 kb on - strand at 4292.701 kb on + strand at 4292.702 kb on - strand at 4292.702 kb on - strand at 4292.702 kb on - strand at 4292.702 kb on - strand at 4292.743 kb on + strand at 4292.743 kb on + strand at 4292.743 kb on + strand at 4292.743 kb on + strand at 4292.743 kb on + strand at 4292.744 kb on - strand at 4292.744 kb on - strand at 4292.744 kb on - strand at 4292.765 kb on + strand at 4292.790 kb on + strand at 4292.794 kb on + strand at 4292.794 kb on + strand at 4292.795 kb on - strand at 4292.795 kb on - strand at 4292.801 kb on + strand at 4292.801 kb on + strand at 4292.801 kb on + strand at 4292.841 kb on - strand at 4292.842 kb on + strand at 4292.842 kb on + strand at 4292.843 kb on - strand at 4292.843 kb on - strand at 4292.843 kb on - strand at 4292.843 kb on - strand at 4292.893 kb on + strand at 4292.894 kb on - strand at 4293.233 kb on + strand, within DDA3937_RS18790 at 4293.355 kb on - strand, within DDA3937_RS18790 at 4293.473 kb on + strand, within DDA3937_RS18790 at 4293.682 kb on + strand, within DDA3937_RS18790 at 4293.715 kb on + strand, within DDA3937_RS18790 at 4293.799 kb on - strand, within DDA3937_RS18790 at 4293.803 kb on - strand, within DDA3937_RS18790 at 4293.819 kb on - strand, within DDA3937_RS18790 at 4293.837 kb on + strand, within DDA3937_RS18790 at 4293.837 kb on + strand, within DDA3937_RS18790 at 4294.217 kb on - strand at 4294.217 kb on - strand at 4294.278 kb on + strand at 4294.279 kb on - strand at 4294.279 kb on - strand at 4294.280 kb on + strand at 4294.280 kb on + strand at 4294.280 kb on + strand at 4294.280 kb on + strand at 4294.281 kb on - strand at 4294.614 kb on + strand at 4294.615 kb on - strand at 4294.616 kb on + strand at 4294.617 kb on - strand at 4294.617 kb on - strand at 4294.617 kb on - strand at 4294.617 kb on - strand at 4294.617 kb on - strand at 4294.617 kb on - strand at 4294.617 kb on - strand at 4294.617 kb on - strand at 4294.623 kb on + strand at 4294.623 kb on + strand at 4294.623 kb on + strand at 4294.623 kb on + strand at 4294.648 kb on + strand at 4294.649 kb on - strand at 4294.689 kb on + strand at 4294.690 kb on - strand at 4294.690 kb on - strand at 4294.690 kb on - strand at 4294.690 kb on - strand at 4294.690 kb on - strand at 4294.690 kb on - strand at 4294.692 kb on + strand at 4294.692 kb on + strand at 4294.692 kb on + strand at 4294.692 kb on + strand at 4294.692 kb on + strand at 4294.692 kb on + strand at 4294.692 kb on + strand at 4294.693 kb on - strand at 4294.693 kb on - strand at 4294.693 kb on - strand at 4294.694 kb on + strand at 4294.694 kb on + strand at 4294.694 kb on + strand at 4294.694 kb on + strand at 4294.694 kb on + strand at 4294.694 kb on + strand at 4294.694 kb on + strand at 4294.694 kb on + strand at 4294.695 kb on - strand at 4294.695 kb on - strand at 4294.695 kb on - strand at 4294.719 kb on + strand at 4294.719 kb on + strand at 4294.720 kb on - strand at 4294.788 kb on + strand at 4294.789 kb on - strand at 4294.831 kb on + strand at 4294.831 kb on + strand at 4294.831 kb on + strand at 4294.831 kb on + strand at 4294.831 kb on + strand at 4294.832 kb on - strand at 4294.832 kb on - strand at 4294.832 kb on - strand at 4294.832 kb on - strand at 4294.832 kb on - strand at 4294.832 kb on - strand at 4294.832 kb on - strand at 4294.936 kb on + strand, within DDA3937_RS18795 at 4294.936 kb on + strand, within DDA3937_RS18795 at 4294.937 kb on - strand, within DDA3937_RS18795
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,292,004 - DDA3937_RS18785 0.62 +1.2 4,292,004 - DDA3937_RS18785 0.62 +1.3 4,292,017 + DDA3937_RS18785 0.63 -2.2 4,292,017 + DDA3937_RS18785 0.63 -1.0 4,292,018 - DDA3937_RS18785 0.63 +0.6 4,292,064 + DDA3937_RS18785 0.66 -1.6 4,292,064 + DDA3937_RS18785 0.66 +0.2 4,292,064 + DDA3937_RS18785 0.66 -0.2 4,292,064 + DDA3937_RS18785 0.66 -1.4 4,292,065 - DDA3937_RS18785 0.66 -0.3 4,292,072 + +2.0 4,292,072 + DDA3937_RS18785 0.66 +0.0 4,292,073 - DDA3937_RS18785 0.66 -1.2 4,292,073 - DDA3937_RS18785 0.66 -0.8 4,292,073 - DDA3937_RS18785 0.66 -0.8 4,292,073 - DDA3937_RS18785 0.66 -0.3 4,292,074 + DDA3937_RS18785 0.66 -0.3 4,292,075 - DDA3937_RS18785 0.66 -0.5 4,292,122 - DDA3937_RS18785 0.69 +6.3 4,292,130 + DDA3937_RS18785 0.70 +0.2 4,292,132 + DDA3937_RS18785 0.70 +1.0 4,292,132 + DDA3937_RS18785 0.70 +0.3 4,292,133 - DDA3937_RS18785 0.70 -0.9 4,292,174 + DDA3937_RS18785 0.72 -0.1 4,292,198 + DDA3937_RS18785 0.74 -0.5 4,292,199 - DDA3937_RS18785 0.74 +0.8 4,292,199 - DDA3937_RS18785 0.74 -2.1 4,292,211 + DDA3937_RS18785 0.75 -1.8 4,292,212 - DDA3937_RS18785 0.75 -1.3 4,292,212 - DDA3937_RS18785 0.75 -0.2 4,292,265 - DDA3937_RS18785 0.78 -1.1 4,292,272 - DDA3937_RS18785 0.78 -0.7 4,292,272 - DDA3937_RS18785 0.78 +0.2 4,292,272 - DDA3937_RS18785 0.78 -0.4 4,292,276 + DDA3937_RS18785 0.79 +0.1 4,292,277 - DDA3937_RS18785 0.79 -1.6 4,292,277 - DDA3937_RS18785 0.79 -0.4 4,292,280 + DDA3937_RS18785 0.79 +1.2 4,292,305 - DDA3937_RS18785 0.80 -0.2 4,292,305 - DDA3937_RS18785 0.80 +0.8 4,292,376 + DDA3937_RS18785 0.85 -1.8 4,292,439 + DDA3937_RS18785 0.88 -1.7 4,292,440 - DDA3937_RS18785 0.88 -0.1 4,292,447 + DDA3937_RS18785 0.89 -0.7 4,292,447 + DDA3937_RS18785 0.89 -0.2 4,292,448 - DDA3937_RS18785 0.89 +2.3 4,292,472 + -2.5 4,292,473 - +0.9 4,292,485 - -2.4 4,292,538 - -0.3 4,292,570 - -1.3 4,292,574 + +0.1 4,292,574 + -0.9 4,292,575 - -1.0 4,292,578 + +0.5 4,292,578 + +0.3 4,292,578 + +0.6 4,292,578 + +0.7 4,292,579 - +1.5 4,292,625 + +0.5 4,292,626 - +1.7 4,292,637 - +1.9 4,292,698 - -2.4 4,292,701 + -1.8 4,292,702 - -0.9 4,292,702 - -0.2 4,292,702 - +0.4 4,292,702 - -0.3 4,292,743 + +1.6 4,292,743 + -0.6 4,292,743 + -0.2 4,292,743 + -0.9 4,292,743 + -0.2 4,292,744 - +2.0 4,292,744 - -2.1 4,292,744 - -1.6 4,292,765 + -0.3 4,292,790 + +1.6 4,292,794 + +0.0 4,292,794 + +0.3 4,292,795 - -0.1 4,292,795 - +0.2 4,292,801 + -0.2 4,292,801 + +0.4 4,292,801 + -0.3 4,292,841 - -3.3 4,292,842 + +1.1 4,292,842 + -1.8 4,292,843 - -0.5 4,292,843 - -1.4 4,292,843 - -0.2 4,292,843 - -1.1 4,292,893 + -0.2 4,292,894 - +1.2 4,293,233 + DDA3937_RS18790 0.23 +1.0 4,293,355 - DDA3937_RS18790 0.35 -1.2 4,293,473 + DDA3937_RS18790 0.46 +1.3 4,293,682 + DDA3937_RS18790 0.67 +1.2 4,293,715 + DDA3937_RS18790 0.70 -0.4 4,293,799 - DDA3937_RS18790 0.78 -1.6 4,293,803 - DDA3937_RS18790 0.79 +2.6 4,293,819 - DDA3937_RS18790 0.80 -0.8 4,293,837 + DDA3937_RS18790 0.82 +0.6 4,293,837 + DDA3937_RS18790 0.82 +1.7 4,294,217 - -0.0 4,294,217 - +0.9 4,294,278 + +1.0 4,294,279 - +1.4 4,294,279 - +0.7 4,294,280 + -0.0 4,294,280 + -0.2 4,294,280 + -0.9 4,294,280 + +0.5 4,294,281 - -0.2 4,294,614 + -0.0 4,294,615 - +1.0 4,294,616 + +0.1 4,294,617 - +0.4 4,294,617 - -0.1 4,294,617 - +1.0 4,294,617 - +0.3 4,294,617 - +1.1 4,294,617 - +1.9 4,294,617 - -1.1 4,294,617 - +0.1 4,294,623 + +0.4 4,294,623 + -1.2 4,294,623 + +1.4 4,294,623 + -0.7 4,294,648 + -0.1 4,294,649 - +0.8 4,294,689 + -0.8 4,294,690 - -0.5 4,294,690 - +1.2 4,294,690 - +1.1 4,294,690 - -2.5 4,294,690 - -1.4 4,294,690 - -0.8 4,294,692 + -1.0 4,294,692 + -1.2 4,294,692 + -1.1 4,294,692 + +1.3 4,294,692 + +0.1 4,294,692 + -0.6 4,294,692 + +1.8 4,294,693 - -0.2 4,294,693 - -0.4 4,294,693 - -0.3 4,294,694 + -1.8 4,294,694 + +1.2 4,294,694 + +0.4 4,294,694 + +0.2 4,294,694 + +0.5 4,294,694 + -0.1 4,294,694 + -1.1 4,294,694 + +0.4 4,294,695 - -0.4 4,294,695 - +0.1 4,294,695 - +0.6 4,294,719 + -0.5 4,294,719 + +1.2 4,294,720 - -0.6 4,294,788 + +1.0 4,294,789 - +1.1 4,294,831 + +0.7 4,294,831 + +0.3 4,294,831 + -0.4 4,294,831 + +0.6 4,294,831 + -0.6 4,294,832 - +0.7 4,294,832 - +0.3 4,294,832 - +0.4 4,294,832 - -0.2 4,294,832 - -1.0 4,294,832 - +0.1 4,294,832 - +0.1 4,294,936 + DDA3937_RS18795 0.20 +1.4 4,294,936 + DDA3937_RS18795 0.20 -0.1 4,294,937 - DDA3937_RS18795 0.20 -2.8
Or see this region's nucleotide sequence