Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18620

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,254,194	+				+0.4
4,254,222	+				+4.7
4,254,223	-				-1.0
4,254,223	-				-0.2
4,254,223	-				-0.4
4,254,228	-				-1.0
4,254,228	-				+0.4
4,254,240	-				+1.6
4,254,244	+				+0.7
4,254,244	+				+0.8
4,254,244	+				-0.1
4,254,244	+				+0.8
4,254,244	+				-0.6
4,254,244	+				+1.7
4,254,244	+				+0.6
4,254,245	-				-1.0
4,254,245	-				+0.1
4,254,245	-				-0.2
4,254,251	+				-0.6
4,254,252	-				-0.8
4,254,379	+		DDA3937_RS18615	0.14	+1.1
4,254,380	-		DDA3937_RS18615	0.15	-0.2
4,254,395	-		DDA3937_RS18615	0.16	+1.4
4,254,415	+		DDA3937_RS18615	0.18	+1.4
4,254,415	+		DDA3937_RS18615	0.18	+0.8
4,255,149	-				-0.9
4,255,223	+				-0.4
4,255,223	+				+0.4
4,255,223	+				+0.8
4,255,223	+				+0.5
4,255,223	+				-1.5
4,255,224	-				+0.2
4,255,224	-				+0.1
4,255,224	-				-1.2
4,255,224	-				+0.4
4,255,224	-				+1.4
4,255,224	-				-1.5
4,255,224	-				-1.0
4,255,224	-				+0.7
4,255,224	-				-1.8
4,255,225	+				-2.6
4,255,225	+				-0.7
4,255,225	+				+1.3
4,255,225	+				+1.1
4,255,225	+				-2.6
4,255,226	-				-0.9
4,255,226	-				-0.6
4,255,226	-				-0.3
4,255,226	-				-0.2
4,255,226	-				-0.9
4,255,273	+				+0.0
4,255,273	+				-2.5
4,255,274	-				-1.0
4,255,274	-				-0.5
4,255,392	-		DDA3937_RS18620	0.11	+1.4
4,255,392	-		DDA3937_RS18620	0.11	-1.5
4,255,483	+		DDA3937_RS18620	0.16	-0.3
4,255,483	+		DDA3937_RS18620	0.16	-0.6
4,255,484	-		DDA3937_RS18620	0.16	-0.4
4,255,489	+		DDA3937_RS18620	0.16	-0.3
4,255,489	+				-0.2
4,255,490	-		DDA3937_RS18620	0.16	-1.9
4,255,588	+		DDA3937_RS18620	0.21	-0.5
4,255,589	-		DDA3937_RS18620	0.21	-0.1
4,255,635	-		DDA3937_RS18620	0.24	-0.2
4,255,679	+		DDA3937_RS18620	0.26	-0.3
4,255,694	+		DDA3937_RS18620	0.27	-0.5
4,255,694	+		DDA3937_RS18620	0.27	-1.1
4,255,694	+		DDA3937_RS18620	0.27	+0.0
4,255,694	+		DDA3937_RS18620	0.27	-1.5
4,255,695	-		DDA3937_RS18620	0.27	+0.1
4,255,695	-		DDA3937_RS18620	0.27	-0.6
4,255,695	-		DDA3937_RS18620	0.27	-2.3
4,255,695	-		DDA3937_RS18620	0.27	-1.2
4,255,707	-		DDA3937_RS18620	0.27	-0.7
4,255,890	-		DDA3937_RS18620	0.37	-1.0
4,256,134	+		DDA3937_RS18620	0.49	-0.5
4,256,153	+		DDA3937_RS18620	0.50	-0.9
4,256,153	+		DDA3937_RS18620	0.50	+0.2
4,256,154	-		DDA3937_RS18620	0.50	+2.4
4,256,154	-		DDA3937_RS18620	0.50	-1.6
4,256,154	-		DDA3937_RS18620	0.50	-0.3
4,256,157	+		DDA3937_RS18620	0.50	-0.2
4,256,157	+		DDA3937_RS18620	0.50	-0.8
4,256,157	+		DDA3937_RS18620	0.50	+0.9
4,256,157	+		DDA3937_RS18620	0.50	-2.8
4,256,157	+		DDA3937_RS18620	0.50	-0.5
4,256,157	+		DDA3937_RS18620	0.50	-2.2
4,256,158	-		DDA3937_RS18620	0.51	-0.5
4,256,168	-		DDA3937_RS18620	0.51	-1.2
4,256,168	-		DDA3937_RS18620	0.51	-1.2
4,256,168	-		DDA3937_RS18620	0.51	-0.6
4,256,218	-		DDA3937_RS18620	0.54	-1.1
4,256,249	+		DDA3937_RS18620	0.55	+0.4
4,256,249	+		DDA3937_RS18620	0.55	-0.1
4,256,250	-		DDA3937_RS18620	0.55	-1.1
4,256,250	-		DDA3937_RS18620	0.55	-0.6
4,256,250	-		DDA3937_RS18620	0.55	+1.4
4,256,258	+		DDA3937_RS18620	0.56	-1.3
4,256,258	+		DDA3937_RS18620	0.56	-1.0
4,256,258	+		DDA3937_RS18620	0.56	-0.2
4,256,258	+		DDA3937_RS18620	0.56	-1.1
4,256,258	+		DDA3937_RS18620	0.56	-0.6
4,256,258	+		DDA3937_RS18620	0.56	-1.3
4,256,258	+		DDA3937_RS18620	0.56	-0.1
4,256,258	+		DDA3937_RS18620	0.56	-1.1
4,256,258	+		DDA3937_RS18620	0.56	-0.1
4,256,258	+		DDA3937_RS18620	0.56	-0.5
4,256,259	-		DDA3937_RS18620	0.56	-0.6
4,256,259	-		DDA3937_RS18620	0.56	+1.2
4,256,259	-		DDA3937_RS18620	0.56	-0.8
4,256,295	-		DDA3937_RS18620	0.58	-2.1
4,256,351	+		DDA3937_RS18620	0.60	+1.7
4,256,351	+		DDA3937_RS18620	0.60	-0.6
4,256,352	-		DDA3937_RS18620	0.61	-1.6
4,256,352	-		DDA3937_RS18620	0.61	-1.5
4,256,352	-		DDA3937_RS18620	0.61	-2.2
4,256,352	-		DDA3937_RS18620	0.61	-0.6
4,256,357	+		DDA3937_RS18620	0.61	-0.6
4,256,357	+		DDA3937_RS18620	0.61	+3.0
4,256,358	-		DDA3937_RS18620	0.61	+0.4
4,256,358	-		DDA3937_RS18620	0.61	-0.1
4,256,358	-		DDA3937_RS18620	0.61	-0.5
4,256,534	-		DDA3937_RS18620	0.70	+2.2
4,256,556	+		DDA3937_RS18620	0.71	-0.1
4,256,556	+		DDA3937_RS18620	0.71	-0.5
4,256,556	+		DDA3937_RS18620	0.71	+0.4
4,256,556	+		DDA3937_RS18620	0.71	+0.0
4,256,557	-		DDA3937_RS18620	0.71	-0.4
4,256,557	-		DDA3937_RS18620	0.71	+0.6
4,256,557	-		DDA3937_RS18620	0.71	-1.2
4,256,557	-		DDA3937_RS18620	0.71	+1.4
4,256,557	-		DDA3937_RS18620	0.71	-0.5
4,256,559	+		DDA3937_RS18620	0.71	+0.6
4,256,663	+		DDA3937_RS18620	0.77	-0.0
4,256,663	+		DDA3937_RS18620	0.77	-0.6
4,256,814	+		DDA3937_RS18620	0.84	+0.2
4,256,842	+		DDA3937_RS18620	0.86	-2.5
4,256,843	-		DDA3937_RS18620	0.86	-0.7
4,256,843	-		DDA3937_RS18620	0.86	-0.2
4,257,198	+				+1.4
4,257,198	+				-0.5
4,257,198	+				-2.6
4,257,198	+				-0.1
4,257,198	+				+0.1
4,257,198	+				-1.5
4,257,198	+				-0.6
4,257,198	+				+1.1
4,257,198	+				-0.2
4,257,199	-				-0.5
4,257,199	-				-2.1
4,257,199	-				-1.1
4,257,199	-				+0.3
4,257,199	-				-0.6
4,257,199	-				-0.2
4,257,468	-		DDA3937_RS18625	0.19	-0.3
4,257,510	+		DDA3937_RS18625	0.22	-0.6
4,257,510	+		DDA3937_RS18625	0.22	+2.4
4,257,510	+		DDA3937_RS18625	0.22	-1.1
4,257,510	+		DDA3937_RS18625	0.22	-1.5
4,257,510	+		DDA3937_RS18625	0.22	+1.2
4,257,510	+		DDA3937_RS18625	0.22	-1.6
4,257,510	+		DDA3937_RS18625	0.22	-0.3
4,257,511	-		DDA3937_RS18625	0.22	+1.0
4,257,511	-		DDA3937_RS18625	0.22	-1.5
4,257,511	-		DDA3937_RS18625	0.22	-2.0
4,257,511	-		DDA3937_RS18625	0.22	+0.1
4,257,609	+		DDA3937_RS18625	0.28	-0.9
4,257,610	-		DDA3937_RS18625	0.28	-1.1
4,257,635	+		DDA3937_RS18625	0.29	+0.0
4,257,636	-		DDA3937_RS18625	0.29	+0.7