Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18110

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,132,528	+				+0.9
4,132,529	-		DDA3937_RS18105	0.66	-3.6
4,132,539	+		DDA3937_RS18105	0.66	-0.6
4,132,539	+		DDA3937_RS18105	0.66	-0.2
4,132,540	-		DDA3937_RS18105	0.67	-1.3
4,132,540	-		DDA3937_RS18105	0.67	-1.3
4,132,540	-		DDA3937_RS18105	0.67	-1.6
4,132,540	-		DDA3937_RS18105	0.67	-0.0
4,132,540	-		DDA3937_RS18105	0.67	-2.0
4,132,540	-		DDA3937_RS18105	0.67	-0.3
4,132,540	-		DDA3937_RS18105	0.67	-0.8
4,132,562	+		DDA3937_RS18105	0.68	-1.1
4,132,562	+		DDA3937_RS18105	0.68	-0.6
4,132,562	+		DDA3937_RS18105	0.68	-1.5
4,132,563	-		DDA3937_RS18105	0.68	-0.4
4,132,563	-		DDA3937_RS18105	0.68	-0.5
4,132,563	-		DDA3937_RS18105	0.68	-0.8
4,132,595	+		DDA3937_RS18105	0.70	-1.0
4,132,595	+		DDA3937_RS18105	0.70	-1.0
4,132,595	+		DDA3937_RS18105	0.70	-1.2
4,132,595	+		DDA3937_RS18105	0.70	+0.3
4,132,595	+		DDA3937_RS18105	0.70	-0.6
4,132,596	-		DDA3937_RS18105	0.70	+1.3
4,132,596	-		DDA3937_RS18105	0.70	-1.5
4,132,596	-		DDA3937_RS18105	0.70	+0.3
4,132,596	-		DDA3937_RS18105	0.70	-1.3
4,132,676	+		DDA3937_RS18105	0.74	-0.8
4,132,676	+		DDA3937_RS18105	0.74	+0.2
4,132,676	+		DDA3937_RS18105	0.74	-0.4
4,132,677	-		DDA3937_RS18105	0.75	+0.6
4,132,677	-		DDA3937_RS18105	0.75	-1.7
4,132,677	-		DDA3937_RS18105	0.75	-2.3
4,132,677	-		DDA3937_RS18105	0.75	+0.1
4,132,704	+		DDA3937_RS18105	0.76	+0.5
4,132,705	-		DDA3937_RS18105	0.76	-0.2
4,132,705	-		DDA3937_RS18105	0.76	+0.1
4,132,727	+		DDA3937_RS18105	0.77	-0.5
4,132,727	+		DDA3937_RS18105	0.77	-1.9
4,132,727	+		DDA3937_RS18105	0.77	-0.0
4,132,727	+		DDA3937_RS18105	0.77	-1.5
4,132,727	+		DDA3937_RS18105	0.77	-2.0
4,132,728	-		DDA3937_RS18105	0.77	-0.3
4,132,728	-		DDA3937_RS18105	0.77	+1.0
4,132,728	-		DDA3937_RS18105	0.77	-1.1
4,132,728	-		DDA3937_RS18105	0.77	-0.5
4,132,788	-		DDA3937_RS18105	0.81	-1.9
4,132,788	-		DDA3937_RS18105	0.81	-0.7
4,132,845	+		DDA3937_RS18105	0.84	-1.5
4,132,845	+		DDA3937_RS18105	0.84	-0.3
4,132,845	+		DDA3937_RS18105	0.84	-0.9
4,132,846	-		DDA3937_RS18105	0.84	+0.6
4,132,846	-		DDA3937_RS18105	0.84	+0.0
4,132,847	+		DDA3937_RS18105	0.84	-0.2
4,132,847	+		DDA3937_RS18105	0.84	-0.3
4,132,847	+		DDA3937_RS18105	0.84	+0.5
4,132,847	+		DDA3937_RS18105	0.84	-1.5
4,132,847	+		DDA3937_RS18105	0.84	+2.9
4,132,847	+		DDA3937_RS18105	0.84	-0.1
4,132,847	+		DDA3937_RS18105	0.84	-0.3
4,132,847	+		DDA3937_RS18105	0.84	-0.9
4,132,848	-		DDA3937_RS18105	0.84	+0.5
4,132,848	-		DDA3937_RS18105	0.84	-1.8
4,132,848	-		DDA3937_RS18105	0.84	-1.0
4,132,848	-		DDA3937_RS18105	0.84	-0.2
4,132,947	+				-1.0
4,132,947	+				-0.1
4,132,947	+				-0.3
4,132,947	+				+0.4
4,132,947	+				+0.4
4,132,948	-				-0.7
4,132,948	-				-0.5
4,132,948	-				-0.7
4,132,948	-				-0.9
4,132,951	+				-1.1
4,132,951	+				+0.2
4,132,951	+				-0.6
4,132,952	-				-0.9
4,132,952	-				+4.7
4,132,987	+				-0.7
4,132,987	+				-1.5
4,132,987	+				-0.4
4,132,987	+				+0.1
4,132,988	-				+0.5
4,132,988	-				-1.0
4,132,988	-				-0.7
4,133,015	+				+0.2
4,133,015	+				-0.6
4,133,015	+				-0.9
4,133,015	+				-0.6
4,133,015	+				+0.0
4,133,015	+				+0.3
4,133,015	+				+0.0
4,133,015	+				+1.3
4,133,016	-				+0.4
4,133,016	-				+1.0
4,133,016	-				+2.1
4,133,016	-				-0.1
4,133,016	-				+1.0
4,133,016	-				-1.0
4,133,016	-				+0.1
4,133,019	+				+0.6
4,133,128	+				-0.5
4,133,128	+				-0.5
4,133,129	-				-2.3
4,133,129	-				+0.6
4,133,155	+				-0.3
4,133,156	-				-0.5
4,133,171	+				+0.9
4,133,206	+				-2.6
4,133,215	+				-1.8
4,133,215	+				+1.0
4,133,215	+				-0.8
4,133,215	+				-2.7
4,133,216	-				+0.3
4,133,216	-				-0.4
4,133,216	-				-1.4
4,133,216	-				-0.9
4,133,216	-				-0.0
4,133,229	+				-1.3
4,133,229	+				+0.1
4,133,230	-				-0.7
4,133,230	-				+0.3
4,133,230	-				-0.8
4,133,285	-				+1.4
4,133,288	+				-1.9
4,133,289	-				+0.7
4,133,289	-				+3.3
4,133,290	+				-0.0
4,133,290	+				-0.5
4,133,291	-				+1.9
4,133,291	-				-1.5
4,133,291	-				-4.4
4,133,291	-				+0.4
4,133,295	+				-1.1
4,133,295	+				+2.0
4,133,295	+				-0.3
4,133,295	+				-0.0
4,133,296	-				+0.4
4,133,296	-				-1.5
4,133,296	-				-0.3
4,133,304	-				-0.9
4,133,358	+				+0.3
4,133,358	+				-0.4
4,133,359	-				-1.6
4,133,359	-				+1.8
4,133,363	+				-0.1
4,133,363	+				+0.3
4,133,364	-				+1.8
4,133,375	+				-0.1
4,133,375	+				+0.3
4,133,375	+				-2.3
4,133,395	+				-1.9
4,133,396	-				-2.3
4,133,396	-				-0.9
4,133,450	+				+1.4
4,133,463	-				-0.8
4,133,497	-				-1.1
4,133,497	-				-1.7
4,133,523	+				-1.3
4,133,523	+				-0.7
4,133,524	-				-0.2
4,133,524	-				-2.2
4,133,524	-				-1.7
4,133,524	-				-0.1
4,133,547	+				-2.7
4,133,548	-				-1.6
4,133,580	-				+0.1
4,133,767	-		DDA3937_RS18110	0.14	-2.7
4,133,767	-		DDA3937_RS18110	0.14	+1.3
4,133,767	-		DDA3937_RS18110	0.14	-0.4
4,133,767	-		DDA3937_RS18110	0.14	+0.6
4,133,811	+		DDA3937_RS18110	0.17	-0.6
4,133,811	+		DDA3937_RS18110	0.17	-0.9
4,133,811	+		DDA3937_RS18110	0.17	-1.0
4,133,811	+		DDA3937_RS18110	0.17	+0.7
4,133,812	-		DDA3937_RS18110	0.17	-1.1
4,133,812	-		DDA3937_RS18110	0.17	-1.3
4,133,812	-		DDA3937_RS18110	0.17	-0.3
4,133,893	+		DDA3937_RS18110	0.21	-1.9
4,133,894	-		DDA3937_RS18110	0.21	+0.2
4,133,895	+		DDA3937_RS18110	0.21	-0.3
4,133,895	+		DDA3937_RS18110	0.21	-0.5
4,133,895	+		DDA3937_RS18110	0.21	-1.5
4,133,895	+		DDA3937_RS18110	0.21	+0.6
4,133,895	+		DDA3937_RS18110	0.21	-0.3
4,133,895	+		DDA3937_RS18110	0.21	-0.3
4,133,895	+		DDA3937_RS18110	0.21	-0.5
4,133,896	-		DDA3937_RS18110	0.21	-0.2
4,133,900	-		DDA3937_RS18110	0.21	-0.1
4,133,900	-		DDA3937_RS18110	0.21	+0.2
4,134,095	+		DDA3937_RS18110	0.32	-0.8
4,134,095	+		DDA3937_RS18110	0.32	-0.7
4,134,096	-		DDA3937_RS18110	0.32	-0.3
4,134,195	+		DDA3937_RS18110	0.38	-0.7
4,134,195	+		DDA3937_RS18110	0.38	-2.3
4,134,196	-		DDA3937_RS18110	0.38	-1.0
4,134,196	-		DDA3937_RS18110	0.38	-1.5
4,134,235	+		DDA3937_RS18110	0.40	-0.7
4,134,235	+		DDA3937_RS18110	0.40	-0.5
4,134,236	-		DDA3937_RS18110	0.40	+0.0
4,134,236	-		DDA3937_RS18110	0.40	+0.1
4,134,236	-		DDA3937_RS18110	0.40	-0.9
4,134,236	-		DDA3937_RS18110	0.40	-1.0
4,134,334	-		DDA3937_RS18110	0.45	-1.4
4,134,334	-		DDA3937_RS18110	0.45	-0.3
4,134,334	-		DDA3937_RS18110	0.45	+0.9
4,134,392	-		DDA3937_RS18110	0.49	+1.0
4,134,392	-		DDA3937_RS18110	0.49	-2.3
4,134,450	-		DDA3937_RS18110	0.52	-0.8
4,134,450	-		DDA3937_RS18110	0.52	-1.1
4,134,506	+		DDA3937_RS18110	0.55	-0.2
4,134,506	+		DDA3937_RS18110	0.55	+0.1
4,134,507	-		DDA3937_RS18110	0.55	-0.5
4,134,507	-		DDA3937_RS18110	0.55	-0.7
4,134,507	-		DDA3937_RS18110	0.55	-2.5
4,134,507	-		DDA3937_RS18110	0.55	-0.6
4,134,561	+		DDA3937_RS18110	0.58	-0.5
4,134,561	+		DDA3937_RS18110	0.58	-0.4
4,134,561	+		DDA3937_RS18110	0.58	-0.7
4,134,562	-		DDA3937_RS18110	0.58	-1.0
4,134,589	+		DDA3937_RS18110	0.60	-0.3
4,134,590	-		DDA3937_RS18110	0.60	-0.2
4,134,590	-		DDA3937_RS18110	0.60	+1.0
4,134,590	-		DDA3937_RS18110	0.60	-0.3
4,134,590	-		DDA3937_RS18110	0.60	-0.3
4,134,604	+		DDA3937_RS18110	0.60	+0.1
4,134,604	+		DDA3937_RS18110	0.60	-1.7
4,134,605	-		DDA3937_RS18110	0.60	-0.7
4,134,605	-		DDA3937_RS18110	0.60	-0.3
4,134,605	-		DDA3937_RS18110	0.60	-0.2
4,134,644	+		DDA3937_RS18110	0.63	-1.5
4,134,644	+		DDA3937_RS18110	0.63	+0.1
4,134,644	+		DDA3937_RS18110	0.63	-1.0
4,134,644	+		DDA3937_RS18110	0.63	-1.3
4,134,644	+		DDA3937_RS18110	0.63	-1.2
4,134,644	+		DDA3937_RS18110	0.63	-0.8
4,134,644	+		DDA3937_RS18110	0.63	-1.0
4,134,645	-		DDA3937_RS18110	0.63	-0.8
4,134,645	-		DDA3937_RS18110	0.63	-0.7
4,134,645	-				-0.7
4,134,645	-		DDA3937_RS18110	0.63	-1.2
4,134,645	-		DDA3937_RS18110	0.63	-0.1
4,134,645	-		DDA3937_RS18110	0.63	-1.8
4,134,645	-		DDA3937_RS18110	0.63	-0.8
4,134,645	-		DDA3937_RS18110	0.63	-0.6
4,134,645	-		DDA3937_RS18110	0.63	-0.8
4,134,645	-		DDA3937_RS18110	0.63	+0.8
4,134,645	-		DDA3937_RS18110	0.63	-0.5
4,134,645	-		DDA3937_RS18110	0.63	-1.2
4,134,645	-		DDA3937_RS18110	0.63	-0.7
4,134,752	-		DDA3937_RS18110	0.69	-1.2
4,134,752	-		DDA3937_RS18110	0.69	-0.4
4,134,753	+		DDA3937_RS18110	0.69	-0.8
4,134,753	+				-0.3
4,134,753	+		DDA3937_RS18110	0.69	-1.7
4,134,753	+		DDA3937_RS18110	0.69	-1.4
4,134,753	+		DDA3937_RS18110	0.69	-0.4
4,134,753	+		DDA3937_RS18110	0.69	+0.1
4,134,753	+		DDA3937_RS18110	0.69	-1.4
4,134,754	-		DDA3937_RS18110	0.69	-0.0
4,134,754	-		DDA3937_RS18110	0.69	-0.7
4,134,754	-		DDA3937_RS18110	0.69	-0.0
4,134,754	-		DDA3937_RS18110	0.69	+0.5
4,134,754	-				+2.3
4,134,754	-		DDA3937_RS18110	0.69	-2.3
4,134,754	-		DDA3937_RS18110	0.69	+1.6
4,134,754	-		DDA3937_RS18110	0.69	-1.4
4,134,904	+		DDA3937_RS18110	0.77	-0.2
4,134,905	-		DDA3937_RS18110	0.77	-1.7
4,134,905	-		DDA3937_RS18110	0.77	+0.7
4,134,928	+		DDA3937_RS18110	0.78	+0.2
4,135,038	+		DDA3937_RS18110	0.84	-0.5
4,135,039	-		DDA3937_RS18110	0.84	-0.2
4,135,039	-		DDA3937_RS18110	0.84	+0.3
4,135,039	-		DDA3937_RS18110	0.84	-1.0
4,135,039	-		DDA3937_RS18110	0.84	+0.2
4,135,071	-		DDA3937_RS18110	0.86	-2.3
4,135,099	+		DDA3937_RS18110	0.88	-0.4
4,135,099	+		DDA3937_RS18110	0.88	-0.7
4,135,099	+		DDA3937_RS18110	0.88	-0.9
4,135,099	+		DDA3937_RS18110	0.88	-0.1
4,135,100	-		DDA3937_RS18110	0.88	+0.1
4,135,100	-		DDA3937_RS18110	0.88	-0.4
4,135,100	-		DDA3937_RS18110	0.88	-0.5
4,135,293	+				+0.2
4,135,293	+				-2.9
4,135,294	-				+1.3
4,135,348	-				-0.7
4,135,374	-				-0.5
4,135,449	+				+0.5
4,135,449	+				+0.5
4,135,449	+				-0.1
4,135,449	+				-1.4
4,135,449	+				+1.3
4,135,449	+				-0.2
4,135,449	+				+1.0
4,135,450	-				+1.0
4,135,450	-				-0.5
4,135,460	+				+0.4
4,135,461	-				+1.0
4,135,461	-				-0.5
4,135,461	-				-1.6
4,135,461	-				-1.3
4,135,498	+				-2.4
4,135,498	+				+1.3
4,135,499	-				-2.6
4,135,504	+				-1.6
4,135,505	-				-1.0
4,135,554	+				+0.8
4,135,555	-				-4.0
4,135,577	+		DDA3937_RS23335	0.33	+0.7
4,135,578	-		DDA3937_RS23335	0.35	-1.0
4,135,578	-		DDA3937_RS23335	0.35	-1.5
4,135,578	-		DDA3937_RS23335	0.35	-0.9
4,135,580	+		DDA3937_RS23335	0.37	+1.0
4,135,581	-		DDA3937_RS23335	0.38	-1.3
4,135,581	-		DDA3937_RS23335	0.38	-1.9
4,135,583	+		DDA3937_RS23335	0.40	-0.3
4,135,583	+		DDA3937_RS23335	0.40	-0.4
4,135,583	+		DDA3937_RS23335	0.40	-2.4
4,135,605	+		DDA3937_RS23335	0.67	+0.9
4,135,650	+				-0.5
4,135,653	-				-0.5
4,135,653	-				-0.9
4,135,743	+				-1.3
4,135,744	-				+0.7
4,135,747	-				-0.7
4,135,902	-		DDA3937_RS18115	0.11	-0.9
4,135,917	+		DDA3937_RS18115	0.12	-0.3
4,136,046	+		DDA3937_RS18115	0.20	-1.4
4,136,098	+		DDA3937_RS18115	0.23	-3.2
4,136,098	+		DDA3937_RS18115	0.23	-2.9
4,136,098	+		DDA3937_RS18115	0.23	-2.6
4,136,099	-		DDA3937_RS18115	0.23	-1.9
4,136,099	-		DDA3937_RS18115	0.23	-0.7
4,136,099	-		DDA3937_RS18115	0.23	-2.8
4,136,099	-		DDA3937_RS18115	0.23	-3.2
4,136,099	-		DDA3937_RS18115	0.23	-1.3
4,136,122	+		DDA3937_RS18115	0.25	-2.3
4,136,123	-		DDA3937_RS18115	0.25	-0.7
4,136,123	-		DDA3937_RS18115	0.25	-1.9
4,136,123	-		DDA3937_RS18115	0.25	-1.1
4,136,248	+		DDA3937_RS18115	0.33	-3.4
4,136,290	+		DDA3937_RS18115	0.36	-0.3
4,136,291	-		DDA3937_RS18115	0.36	-0.9
4,136,313	+		DDA3937_RS18115	0.37	-2.7