Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17395

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,958,047	+				-1.9
3,958,052	+				-1.2
3,958,053	-				-1.2
3,958,053	-				-0.3
3,958,056	+				-0.7
3,958,056	+				+1.1
3,958,062	-				+0.5
3,958,062	-				+0.8
3,958,062	-				-0.5
3,958,118	+				-0.3
3,958,119	-				+0.5
3,958,119	-				-0.0
3,958,129	+				+3.1
3,958,129	+				-0.8
3,958,130	-				-1.0
3,958,139	-				-1.7
3,958,159	+				-1.7
3,958,159	+				-0.5
3,958,164	-				+0.1
3,958,206	+				+1.3
3,958,206	+				+0.3
3,958,206	+				+0.3
3,958,207	-				+0.2
3,958,207	-				+0.6
3,958,325	+				-0.9
3,958,325	+				+0.5
3,958,326	-				-0.6
3,958,450	-				-0.8
3,958,450	-				+0.3
3,958,459	+				+0.3
3,958,460	-				-0.9
3,958,489	+				-0.7
3,958,489	+				+0.7
3,958,489	+				+1.5
3,958,490	-				-1.1
3,958,493	-				-0.2
3,958,493	-				-0.3
3,958,493	-				-0.9
3,958,493	-				-0.7
3,958,493	-				+0.7
3,958,509	+				+0.4
3,958,510	-				-0.3
3,958,510	-				+0.6
3,958,510	-				+0.5
3,958,510	-				-0.2
3,958,525	-				+0.6
3,958,525	-				-0.2
3,958,554	+				+1.7
3,958,555	-				-0.2
3,958,555	-				-2.4
3,958,555	-				-1.0
3,958,600	-		DDA3937_RS17390	0.15	-0.3
3,958,600	-		DDA3937_RS17390	0.15	+0.3
3,958,600	-		DDA3937_RS17390	0.15	-0.8
3,958,621	-		DDA3937_RS17390	0.19	+0.0
3,958,621	-		DDA3937_RS17390	0.19	-1.2
3,958,623	+		DDA3937_RS17390	0.20	-1.3
3,958,624	-		DDA3937_RS17390	0.20	-1.1
3,958,641	+		DDA3937_RS17390	0.23	+2.3
3,958,647	+		DDA3937_RS17390	0.25	-0.2
3,958,648	-		DDA3937_RS17390	0.25	+2.6
3,958,648	-		DDA3937_RS17390	0.25	-0.1
3,958,648	-		DDA3937_RS17390	0.25	-0.2
3,958,697	+		DDA3937_RS17390	0.35	-0.3
3,958,697	+		DDA3937_RS17390	0.35	+0.2
3,958,697	+		DDA3937_RS17390	0.35	-0.5
3,958,697	+		DDA3937_RS17390	0.35	-0.3
3,958,740	+		DDA3937_RS17390	0.43	+0.9
3,958,741	-		DDA3937_RS17390	0.43	+0.8
3,958,741	-		DDA3937_RS17390	0.43	+1.3
3,958,741	-		DDA3937_RS17390	0.43	-0.1
3,958,741	-				-0.7
3,958,974	+		DDA3937_RS17390	0.89	-0.5
3,958,975	-		DDA3937_RS17390	0.90	-1.4
3,958,997	+				-0.3
3,958,997	+				-0.1
3,959,008	+				-1.4
3,959,008	+				-0.7
3,959,008	+				-1.3
3,959,009	-				+0.5
3,959,009	-				+0.3
3,959,009	-				-0.2
3,959,072	+				-0.1
3,959,073	-				+0.1
3,959,156	+		DDA3937_RS17395	0.17	-0.7
3,959,252	+		DDA3937_RS17395	0.29	-1.6
3,959,296	-		DDA3937_RS17395	0.35	-0.9
3,959,430	+		DDA3937_RS17395	0.52	+0.8
3,959,430	+		DDA3937_RS17395	0.52	-1.3
3,959,431	-		DDA3937_RS17395	0.52	+2.5
3,959,431	-		DDA3937_RS17395	0.52	+0.5
3,959,577	-		DDA3937_RS17395	0.71	+1.4
3,959,577	-		DDA3937_RS17395	0.71	+1.3
3,959,577	-		DDA3937_RS17395	0.71	+0.7
3,959,577	-		DDA3937_RS17395	0.71	+0.5
3,959,711	+				-0.7
3,959,749	+				+0.9
3,959,750	-				+0.3
3,959,750	-				-0.3
3,959,750	-				-0.7
3,959,750	-				-1.6
3,959,750	-				+0.3
3,959,760	-				+0.5
3,959,776	+				-1.6
3,959,966	+				-0.2
3,959,966	+				+1.2
3,959,966	+				+0.3
3,959,966	+				+0.3
3,959,967	-				+0.7
3,959,967	-				+0.8
3,959,967	-				-0.3
3,959,967	-				-1.2
3,960,013	-				+0.2
3,960,037	+		DDA3937_RS17400	0.17	-0.3
3,960,038	-		DDA3937_RS17400	0.18	+2.9
3,960,074	-		DDA3937_RS17400	0.29	-2.1
3,960,108	-		DDA3937_RS17400	0.40	+0.3
3,960,143	+		DDA3937_RS17400	0.51	-2.4
3,960,155	-		DDA3937_RS17400	0.54	-1.0
3,960,155	-		DDA3937_RS17400	0.54	-0.7
3,960,196	+		DDA3937_RS17400	0.67	-0.1
3,960,197	-		DDA3937_RS17400	0.68	-0.5
3,960,197	-		DDA3937_RS17400	0.68	+1.5
3,960,205	+		DDA3937_RS17400	0.70	-0.6
3,960,285	+				-1.0
3,960,285	+				-1.6
3,960,286	-				-0.0
3,960,309	+				-0.4
3,960,310	-				+0.3
3,960,310	-				-0.3
3,960,313	+				-1.6
3,960,313	+				+1.1
3,960,313	+				-0.3
3,960,313	+				-0.1
3,960,314	-				-1.7
3,960,489	+		DDA3937_RS17405	0.13	-0.0
3,960,489	+		DDA3937_RS17405	0.13	+0.5
3,960,489	+		DDA3937_RS17405	0.13	+0.5
3,960,489	+		DDA3937_RS17405	0.13	-0.3
3,960,490	-		DDA3937_RS17405	0.13	-1.7
3,960,490	-		DDA3937_RS17405	0.13	-0.3
3,960,490	-		DDA3937_RS17405	0.13	-2.2
3,960,490	-		DDA3937_RS17405	0.13	-0.0
3,960,490	-		DDA3937_RS17405	0.13	+0.0
3,960,490	-		DDA3937_RS17405	0.13	-0.2
3,960,490	-		DDA3937_RS17405	0.13	-0.8
3,960,490	-		DDA3937_RS17405	0.13	-0.4
3,960,535	-		DDA3937_RS17405	0.16	+1.7
3,960,657	+		DDA3937_RS17405	0.24	-0.6
3,960,688	-		DDA3937_RS17405	0.26	-0.4
3,960,759	+		DDA3937_RS17405	0.31	-0.3
3,960,759	+		DDA3937_RS17405	0.31	-1.1
3,960,759	+		DDA3937_RS17405	0.31	-1.2
3,960,759	+		DDA3937_RS17405	0.31	-0.4
3,960,759	+		DDA3937_RS17405	0.31	-1.1
3,960,760	-		DDA3937_RS17405	0.31	+0.0
3,960,760	-		DDA3937_RS17405	0.31	+0.1
3,960,762	+		DDA3937_RS17405	0.32	-1.1
3,960,762	+		DDA3937_RS17405	0.32	-0.1
3,960,762	+		DDA3937_RS17405	0.32	+0.8
3,960,762	+		DDA3937_RS17405	0.32	-0.7
3,960,763	-		DDA3937_RS17405	0.32	-0.8
3,960,763	-		DDA3937_RS17405	0.32	+0.9
3,960,765	+		DDA3937_RS17405	0.32	+0.4
3,960,765	+		DDA3937_RS17405	0.32	+1.3
3,960,766	-		DDA3937_RS17405	0.32	-0.3
3,960,766	-		DDA3937_RS17405	0.32	-0.1
3,960,766	-		DDA3937_RS17405	0.32	+0.1
3,960,784	+		DDA3937_RS17405	0.33	-0.1
3,960,784	+		DDA3937_RS17405	0.33	+1.0
3,960,785	-		DDA3937_RS17405	0.33	-2.6