Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17360

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,949,295	-		DDA3937_RS17355	0.35	-0.4
3,949,370	+		DDA3937_RS17355	0.40	-1.9
3,949,370	+		DDA3937_RS17355	0.40	-0.0
3,949,371	-		DDA3937_RS17355	0.40	+1.1
3,949,379	+		DDA3937_RS17355	0.40	+1.1
3,949,380	-				+0.7
3,949,382	-		DDA3937_RS17355	0.40	+0.2
3,949,484	-		DDA3937_RS17355	0.47	+0.8
3,949,495	+		DDA3937_RS17355	0.48	-0.6
3,949,496	-		DDA3937_RS17355	0.48	-1.0
3,949,505	+		DDA3937_RS17355	0.49	-0.1
3,949,505	+		DDA3937_RS17355	0.49	-1.6
3,949,505	+		DDA3937_RS17355	0.49	-0.7
3,949,505	+		DDA3937_RS17355	0.49	-0.3
3,949,505	+		DDA3937_RS17355	0.49	-3.0
3,949,505	+		DDA3937_RS17355	0.49	-0.7
3,949,506	-		DDA3937_RS17355	0.49	-0.0
3,949,506	-		DDA3937_RS17355	0.49	-1.7
3,949,506	-		DDA3937_RS17355	0.49	+0.4
3,949,506	-		DDA3937_RS17355	0.49	-1.6
3,949,506	-		DDA3937_RS17355	0.49	-0.0
3,949,591	+		DDA3937_RS17355	0.54	+0.1
3,949,591	+		DDA3937_RS17355	0.54	-0.1
3,949,592	-		DDA3937_RS17355	0.54	-1.4
3,949,592	-		DDA3937_RS17355	0.54	-0.0
3,949,592	-		DDA3937_RS17355	0.54	-0.8
3,949,595	+		DDA3937_RS17355	0.55	-0.4
3,949,595	+		DDA3937_RS17355	0.55	-0.9
3,949,596	-		DDA3937_RS17355	0.55	+1.7
3,949,596	-		DDA3937_RS17355	0.55	-0.8
3,949,596	-		DDA3937_RS17355	0.55	+0.8
3,949,645	+		DDA3937_RS17355	0.58	-1.0
3,949,645	+		DDA3937_RS17355	0.58	-0.7
3,949,646	-		DDA3937_RS17355	0.58	+0.4
3,949,691	-		DDA3937_RS17355	0.61	+0.5
3,949,700	+		DDA3937_RS17355	0.62	-0.9
3,949,701	-		DDA3937_RS17355	0.62	+0.8
3,949,701	-		DDA3937_RS17355	0.62	-0.9
3,949,701	-		DDA3937_RS17355	0.62	+0.4
3,949,741	+		DDA3937_RS17355	0.64	-1.7
3,949,742	-		DDA3937_RS17355	0.65	+1.3
3,949,742	-		DDA3937_RS17355	0.65	-1.8
3,949,777	+		DDA3937_RS17355	0.67	+0.1
3,949,807	+		DDA3937_RS17355	0.69	-0.6
3,949,849	-		DDA3937_RS17355	0.72	+0.3
3,949,849	-		DDA3937_RS17355	0.72	-0.3
3,949,853	+		DDA3937_RS17355	0.72	+0.8
3,949,871	-		DDA3937_RS17355	0.73	-0.5
3,949,944	-		DDA3937_RS17355	0.78	+0.3
3,949,993	+		DDA3937_RS17355	0.81	-0.2
3,949,993	+		DDA3937_RS17355	0.81	-1.7
3,949,993	+		DDA3937_RS17355	0.81	-0.8
3,949,993	+		DDA3937_RS17355	0.81	+0.7
3,949,994	-		DDA3937_RS17355	0.81	-0.7
3,949,999	+		DDA3937_RS17355	0.82	+1.6
3,950,003	-		DDA3937_RS17355	0.82	-0.9
3,950,033	-		DDA3937_RS17355	0.84	-0.9
3,950,081	+				+2.3
3,950,081	+		DDA3937_RS17355	0.87	+0.1
3,950,082	-		DDA3937_RS17355	0.87	+0.8
3,950,132	+				+0.4
3,950,132	+				-0.7
3,950,133	-				-0.6
3,950,133	-				+0.7
3,950,134	+				-2.4
3,950,135	-				-1.4
3,950,135	-				+1.2
3,950,135	-				+0.4
3,950,262	+				+0.4
3,950,263	-				+0.0
3,950,492	+		DDA3937_RS17360	0.11	+0.8
3,950,645	-		DDA3937_RS17360	0.19	+1.5
3,950,930	-		DDA3937_RS17360	0.34	-0.8
3,950,930	-		DDA3937_RS17360	0.34	-1.2
3,950,989	+		DDA3937_RS17360	0.37	+0.2
3,951,074	+		DDA3937_RS17360	0.41	-0.9
3,951,075	-		DDA3937_RS17360	0.41	+0.8
3,951,085	+		DDA3937_RS17360	0.42	+0.3
3,951,085	+		DDA3937_RS17360	0.42	-0.7
3,951,086	-		DDA3937_RS17360	0.42	+0.6
3,951,283	+		DDA3937_RS17360	0.52	+0.9
3,951,283	+		DDA3937_RS17360	0.52	-1.2
3,951,283	+		DDA3937_RS17360	0.52	+3.1
3,951,283	+		DDA3937_RS17360	0.52	-0.3
3,951,283	+		DDA3937_RS17360	0.52	-0.3
3,951,283	+		DDA3937_RS17360	0.52	-1.1
3,951,283	+		DDA3937_RS17360	0.52	+0.4
3,951,283	+		DDA3937_RS17360	0.52	+0.3
3,951,283	+		DDA3937_RS17360	0.52	-0.7
3,951,283	+		DDA3937_RS17360	0.52	+0.4
3,951,283	+		DDA3937_RS17360	0.52	-0.2
3,951,283	+		DDA3937_RS17360	0.52	+0.4
3,951,284	-		DDA3937_RS17360	0.52	-1.1
3,951,284	-		DDA3937_RS17360	0.52	+1.1
3,951,284	-		DDA3937_RS17360	0.52	-0.1
3,951,284	-		DDA3937_RS17360	0.52	+0.3
3,951,284	-		DDA3937_RS17360	0.52	-0.2
3,951,284	-		DDA3937_RS17360	0.52	+0.7
3,951,284	-		DDA3937_RS17360	0.52	-1.7
3,951,284	-		DDA3937_RS17360	0.52	+0.6
3,951,284	-		DDA3937_RS17360	0.52	-0.3
3,951,284	-		DDA3937_RS17360	0.52	+0.5
3,951,565	+		DDA3937_RS17360	0.67	+1.1
3,951,566	-		DDA3937_RS17360	0.67	-2.1
3,951,566	-		DDA3937_RS17360	0.67	-0.2
3,951,599	+		DDA3937_RS17360	0.68	+1.4
3,951,599	+		DDA3937_RS17360	0.68	-0.1
3,951,673	+		DDA3937_RS17360	0.72	-0.6
3,951,725	+		DDA3937_RS17360	0.75	-0.8
3,951,725	+		DDA3937_RS17360	0.75	-2.8
3,951,730	+		DDA3937_RS17360	0.75	+0.0
3,951,737	+		DDA3937_RS17360	0.76	+0.1
3,951,766	+		DDA3937_RS17360	0.77	-0.7
3,951,766	+		DDA3937_RS17360	0.77	-1.9
3,951,767	-		DDA3937_RS17360	0.77	+0.7
3,951,767	-		DDA3937_RS17360	0.77	-0.0
3,951,830	+		DDA3937_RS17360	0.81	-0.7
3,952,035	-				-0.7
3,952,035	-				-0.7
3,952,054	-				-0.5
3,952,054	-				+2.0
3,952,054	-				-0.6
3,952,054	-				-0.7
3,952,079	+				-1.5
3,952,080	-				-0.2
3,952,080	-				-1.9
3,952,118	+				-2.7
3,952,118	+				+0.3
3,952,118	+				-1.1
3,952,118	+				-1.5
3,952,118	+				-0.1
3,952,119	-				-0.1
3,952,190	-				-1.2
3,952,260	+				-0.6
3,952,260	+				-0.1
3,952,347	+				-2.4
3,952,361	+				+1.0
3,952,361	+				-0.7
3,952,361	+				-1.2
3,952,361	+				-1.1
3,952,362	-				-1.1
3,952,362	-				-0.3
3,952,382	+				-1.4
3,952,464	+				+0.1
3,952,464	+				-0.6
3,952,464	+				+1.7
3,952,465	-				+1.3
3,952,465	-				-2.6
3,952,474	-				-2.2
3,952,533	+		DDA3937_RS17365	0.15	+1.7
3,952,539	+		DDA3937_RS17365	0.16	+1.4
3,952,539	+		DDA3937_RS17365	0.16	-0.1
3,952,540	-		DDA3937_RS17365	0.16	-0.3
3,952,540	-		DDA3937_RS17365	0.16	+1.2
3,952,593	+		DDA3937_RS17365	0.22	-0.7
3,952,597	+		DDA3937_RS17365	0.22	+2.0
3,952,597	+		DDA3937_RS17365	0.22	-0.3
3,952,715	+		DDA3937_RS17365	0.36	-0.6
3,952,718	+		DDA3937_RS17365	0.36	+2.3
3,952,756	-		DDA3937_RS17365	0.40	-0.1
3,952,768	-		DDA3937_RS17365	0.42	+0.2
3,952,768	-		DDA3937_RS17365	0.42	+0.6
3,952,777	-		DDA3937_RS17365	0.43	+0.8
3,952,803	+		DDA3937_RS17365	0.46	-1.2
3,952,816	-		DDA3937_RS17365	0.47	-0.1
3,952,892	+		DDA3937_RS17365	0.56	-1.8
3,952,892	+		DDA3937_RS17365	0.56	-0.7
3,952,892	+		DDA3937_RS17365	0.56	+0.3
3,952,904	+		DDA3937_RS17365	0.57	-0.7
3,952,904	+		DDA3937_RS17365	0.57	-1.4
3,952,905	-		DDA3937_RS17365	0.57	+0.0
3,952,905	-		DDA3937_RS17365	0.57	+0.8
3,952,966	+		DDA3937_RS17365	0.64	+0.4
3,952,967	-		DDA3937_RS17365	0.64	+1.3
3,953,001	-		DDA3937_RS17365	0.68	-2.1
3,953,001	-		DDA3937_RS17365	0.68	-0.4
3,953,001	-		DDA3937_RS17365	0.68	-0.6
3,953,001	-		DDA3937_RS17365	0.68	+0.1
3,953,027	-		DDA3937_RS17365	0.71	-0.3
3,953,103	+		DDA3937_RS17365	0.80	+1.3