Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16415

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,744,292	+		DDA3937_RS16405	0.80	+1.0
3,744,293	-		DDA3937_RS16405	0.81	-0.9
3,744,293	-		DDA3937_RS16405	0.81	-1.8
3,744,349	+		DDA3937_RS16405	0.85	-2.0
3,744,349	+		DDA3937_RS16405	0.85	+1.3
3,744,350	-		DDA3937_RS16405	0.85	-0.8
3,744,380	+		DDA3937_RS16405	0.88	-0.3
3,744,474	-				+0.3
3,744,481	+				-1.2
3,744,481	+				-0.2
3,744,481	+				+0.7
3,744,481	+				+0.0
3,744,481	+				+1.3
3,744,482	-				-2.2
3,744,482	-				+0.8
3,744,482	-				-0.7
3,744,482	-				-0.2
3,744,497	+				-0.5
3,744,497	+				+0.7
3,744,498	-				+0.4
3,744,539	+				-0.0
3,744,559	-				-0.8
3,744,559	-				-0.2
3,744,612	+				+0.1
3,744,626	-				-0.4
3,744,626	-				+0.0
3,744,648	-				-1.1
3,744,648	-				+0.4
3,744,668	+				-0.1
3,744,668	+				-0.0
3,744,669	-				-2.0
3,744,706	+				+0.0
3,744,706	+				+0.5
3,744,706	+				+0.4
3,744,706	+				-0.6
3,744,707	-				-0.1
3,744,707	-				-0.3
3,744,707	-				+0.1
3,744,707	-				-0.9
3,744,777	-		DDA3937_RS16410	0.23	+0.4
3,744,779	+		DDA3937_RS16410	0.24	+0.1
3,744,779	+		DDA3937_RS16410	0.24	-1.6
3,744,779	+		DDA3937_RS16410	0.24	-2.8
3,744,779	+		DDA3937_RS16410	0.24	-0.1
3,744,784	-		DDA3937_RS16410	0.26	-1.8
3,744,856	+		DDA3937_RS16410	0.49	-1.4
3,744,857	-		DDA3937_RS16410	0.49	-0.1
3,744,857	-		DDA3937_RS16410	0.49	+0.8
3,744,857	-		DDA3937_RS16410	0.49	-3.1
3,744,857	-		DDA3937_RS16410	0.49	-0.1
3,744,867	-		DDA3937_RS16410	0.52	-1.1
3,744,888	+		DDA3937_RS16410	0.59	-0.3
3,744,888	+		DDA3937_RS16410	0.59	+2.0
3,744,920	+		DDA3937_RS16410	0.70	-1.0
3,744,920	+		DDA3937_RS16410	0.70	-0.8
3,744,920	+		DDA3937_RS16410	0.70	+1.2
3,744,924	-		DDA3937_RS16410	0.71	-0.8
3,744,956	+		DDA3937_RS16410	0.81	-0.1
3,744,956	+		DDA3937_RS16410	0.81	-0.2
3,744,988	+				-1.3
3,744,989	-				-2.9
3,744,989	-				-0.2
3,744,998	+				-0.5
3,745,002	-				+0.2
3,745,002	-				-0.7
3,745,002	-				-2.1
3,745,008	+				-2.0
3,745,008	+				-0.1
3,745,008	+				+0.7
3,745,008	+				+0.9
3,745,009	-				+0.1
3,745,009	-				+0.1
3,745,009	-				+1.4
3,745,009	-				-2.4
3,745,009	-				-0.0
3,745,009	-				+0.0
3,745,026	-				+0.6
3,745,026	-				+2.4
3,745,026	-				+0.6
3,745,029	+				-0.4
3,745,029	+				-0.4
3,745,030	-				+0.2
3,745,030	-				+0.8
3,745,058	-				-0.1
3,745,058	-				+0.8
3,745,103	+		DDA3937_RS16415	0.11	+5.1
3,745,143	+		DDA3937_RS16415	0.17	-0.3
3,745,147	+		DDA3937_RS16415	0.18	+1.0
3,745,147	+		DDA3937_RS16415	0.18	+0.8
3,745,186	-		DDA3937_RS16415	0.24	+0.2
3,745,298	-		DDA3937_RS16415	0.42	+0.4
3,745,299	+				+1.9
3,745,300	-		DDA3937_RS16415	0.42	+1.7
3,745,300	-		DDA3937_RS16415	0.42	+0.4
3,745,303	+		DDA3937_RS16415	0.43	-0.4
3,745,303	+		DDA3937_RS16415	0.43	+2.9
3,745,303	+		DDA3937_RS16415	0.43	+0.9
3,745,303	+		DDA3937_RS16415	0.43	+1.2
3,745,303	+		DDA3937_RS16415	0.43	+0.6
3,745,303	+		DDA3937_RS16415	0.43	-0.2
3,745,303	+		DDA3937_RS16415	0.43	+0.4
3,745,303	+		DDA3937_RS16415	0.43	+0.6
3,745,304	-		DDA3937_RS16415	0.43	-0.4
3,745,304	-		DDA3937_RS16415	0.43	+0.8
3,745,304	-		DDA3937_RS16415	0.43	+0.7
3,745,304	-		DDA3937_RS16415	0.43	+0.2
3,745,304	-		DDA3937_RS16415	0.43	+2.7
3,745,330	+		DDA3937_RS16415	0.47	+1.7
3,745,478	+		DDA3937_RS16415	0.71	-0.1
3,745,479	-		DDA3937_RS16415	0.71	-0.8
3,745,479	-		DDA3937_RS16415	0.71	+0.2
3,745,545	+		DDA3937_RS16415	0.81	-0.0
3,745,578	-		DDA3937_RS16415	0.87	-1.0
3,745,588	+		DDA3937_RS16415	0.88	-1.0
3,745,588	+		DDA3937_RS16415	0.88	-1.3
3,745,633	+				+0.7
3,745,634	-				-0.0
3,745,634	-				-1.2
3,745,643	+				-1.6
3,745,643	+				+1.2
3,745,643	+				+0.4
3,745,643	+				-0.7
3,745,644	-				-1.6
3,745,644	-				-2.3
3,745,644	-				+0.6
3,745,644	-				+0.4
3,745,644	-				-0.1
3,745,644	-				-0.4
3,745,644	-				+1.6
3,745,644	-				+0.1
3,745,645	+				+0.0
3,745,645	+				+1.0
3,745,646	-				-1.0
3,745,646	-				-0.2
3,745,649	+				-2.6
3,745,717	+				+0.2
3,745,717	+				-0.8
3,745,718	-				-0.8
3,745,809	-		DDA3937_RS16420	0.15	-0.3
3,745,832	+		DDA3937_RS16420	0.18	+0.6
3,745,833	-		DDA3937_RS16420	0.18	-0.9
3,745,860	+		DDA3937_RS16420	0.21	-1.8
3,745,860	+		DDA3937_RS16420	0.21	+1.3
3,745,861	-		DDA3937_RS16420	0.22	-2.1
3,745,861	-		DDA3937_RS16420	0.22	+1.2
3,745,935	-		DDA3937_RS16420	0.31	-2.1
3,745,935	-		DDA3937_RS16420	0.31	-0.2
3,746,019	-		DDA3937_RS16420	0.42	+0.5
3,746,019	-		DDA3937_RS16420	0.42	-1.5
3,746,072	+		DDA3937_RS16420	0.49	-0.7
3,746,072	+		DDA3937_RS16420	0.49	+3.1
3,746,072	+		DDA3937_RS16420	0.49	-0.5
3,746,115	-		DDA3937_RS16420	0.54	-0.7
3,746,118	+		DDA3937_RS16420	0.55	-0.5
3,746,119	-		DDA3937_RS16420	0.55	+0.6
3,746,287	-		DDA3937_RS16420	0.77	+0.1
3,746,354	+		DDA3937_RS16420	0.85	-0.3
3,746,354	+		DDA3937_RS16420	0.85	+1.3
3,746,354	+		DDA3937_RS16420	0.85	+0.1
3,746,355	-		DDA3937_RS16420	0.85	+0.2
3,746,355	-		DDA3937_RS16420	0.85	-1.8
3,746,355	-		DDA3937_RS16420	0.85	-0.8
3,746,358	-				-0.4
3,746,362	+		DDA3937_RS16420	0.86	-0.5
3,746,389	+		DDA3937_RS16420	0.90	+0.0
3,746,389	+		DDA3937_RS16420	0.90	-0.9
3,746,389	+		DDA3937_RS16420	0.90	-0.4
3,746,389	+		DDA3937_RS16420	0.90	+0.6
3,746,390	-				-0.2
3,746,460	+				+0.6
3,746,460	+				-1.1
3,746,460	+				+0.2
3,746,460	+				+0.6
3,746,460	+				+1.7
3,746,461	-				+0.6
3,746,468	-				-0.4
3,746,468	-				-1.3
3,746,468	-				+0.2
3,746,468	-				-0.0
3,746,468	-				-0.9
3,746,468	-				-0.4
3,746,487	+				+0.4
3,746,523	-				+0.2
3,746,551	+				+0.8
3,746,552	-				+0.3
3,746,644	+				-0.6
3,746,644	+				+0.3
3,746,644	+				+1.8
3,746,645	-				-0.4
3,746,645	-				+0.8
3,746,645	-				+0.3