Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16390

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,738,874	+		DDA3937_RS16385	0.40	-0.4
3,738,874	+		DDA3937_RS16385	0.40	+0.0
3,738,914	-		DDA3937_RS16385	0.42	+3.2
3,738,914	-		DDA3937_RS16385	0.42	+1.4
3,738,914	-		DDA3937_RS16385	0.42	-3.3
3,738,916	+		DDA3937_RS16385	0.43	+0.1
3,738,917	-		DDA3937_RS16385	0.43	+1.3
3,738,917	-		DDA3937_RS16385	0.43	-0.1
3,738,919	+		DDA3937_RS16385	0.43	+0.4
3,738,919	+		DDA3937_RS16385	0.43	-0.1
3,738,919	+		DDA3937_RS16385	0.43	-2.1
3,738,919	+		DDA3937_RS16385	0.43	-0.2
3,738,919	+		DDA3937_RS16385	0.43	-1.1
3,738,920	-		DDA3937_RS16385	0.43	+3.5
3,738,920	-		DDA3937_RS16385	0.43	-0.6
3,738,937	+		DDA3937_RS16385	0.44	-1.0
3,738,937	+		DDA3937_RS16385	0.44	-2.5
3,739,214	-		DDA3937_RS16385	0.61	+1.2
3,739,253	-		DDA3937_RS16385	0.64	-0.6
3,739,271	+		DDA3937_RS16385	0.65	-0.2
3,739,271	+		DDA3937_RS16385	0.65	+0.3
3,739,272	-		DDA3937_RS16385	0.65	-0.4
3,739,272	-		DDA3937_RS16385	0.65	+0.5
3,739,288	+		DDA3937_RS16385	0.66	+0.7
3,739,288	+		DDA3937_RS16385	0.66	-0.4
3,739,289	-		DDA3937_RS16385	0.66	-0.4
3,739,289	-		DDA3937_RS16385	0.66	+0.6
3,739,289	-		DDA3937_RS16385	0.66	+0.6
3,739,346	+		DDA3937_RS16385	0.69	+1.3
3,739,346	+		DDA3937_RS16385	0.69	-0.8
3,739,346	+		DDA3937_RS16385	0.69	-0.8
3,739,347	-		DDA3937_RS16385	0.70	+0.7
3,739,462	+		DDA3937_RS16385	0.77	-1.6
3,739,463	-		DDA3937_RS16385	0.77	+1.3
3,739,463	-		DDA3937_RS16385	0.77	-0.9
3,739,463	-		DDA3937_RS16385	0.77	+0.2
3,739,463	-		DDA3937_RS16385	0.77	-1.0
3,739,495	+				+1.2
3,739,496	-		DDA3937_RS16385	0.79	+1.2
3,739,496	-		DDA3937_RS16385	0.79	+1.5
3,739,507	+		DDA3937_RS16385	0.80	-0.1
3,739,508	-		DDA3937_RS16385	0.80	-0.0
3,739,508	-		DDA3937_RS16385	0.80	+0.1
3,739,508	-		DDA3937_RS16385	0.80	+1.6
3,739,508	-		DDA3937_RS16385	0.80	-0.1
3,739,508	-		DDA3937_RS16385	0.80	+0.2
3,739,512	+		DDA3937_RS16385	0.80	-0.5
3,739,512	+		DDA3937_RS16385	0.80	-0.0
3,739,512	+		DDA3937_RS16385	0.80	-0.1
3,739,513	-		DDA3937_RS16385	0.80	+0.5
3,739,513	-		DDA3937_RS16385	0.80	+2.1
3,739,513	-		DDA3937_RS16385	0.80	+2.7
3,739,513	-		DDA3937_RS16385	0.80	-0.0
3,739,549	+		DDA3937_RS16385	0.82	-0.9
3,739,549	+		DDA3937_RS16385	0.82	-3.2
3,739,550	-		DDA3937_RS16385	0.82	-0.6
3,739,550	-		DDA3937_RS16385	0.82	-0.4
3,739,658	-		DDA3937_RS16385	0.89	-2.0
3,739,721	+				+1.1
3,739,721	+				-0.3
3,739,721	+				-0.5
3,739,721	+				-0.1
3,739,722	-				-0.4
3,739,722	-				-0.4
3,739,722	-				-0.4
3,739,722	-				+0.2
3,739,722	-				-1.5
3,739,741	+				-1.5
3,739,741	+				+2.1
3,739,742	-				-0.1
3,739,742	-				-1.8
3,739,742	-				-0.4
3,739,742	-				+0.6
3,739,836	+				+0.1
3,739,836	+				+0.6
3,739,860	+				+0.6
3,739,860	+				-1.0
3,739,860	+				-0.4
3,739,860	+				-0.5
3,739,861	-				+1.1
3,739,861	-				-0.7
3,739,890	+				-0.6
3,739,890	+				-0.0
3,739,891	-				-1.6
3,739,891	-				-1.1
3,739,891	-				-1.1
3,739,891	-				-0.4
3,739,891	-				+0.2
3,740,043	+		DDA3937_RS16390	0.21	-0.3
3,740,259	+		DDA3937_RS16390	0.43	-2.1
3,740,259	+		DDA3937_RS16390	0.43	-1.2
3,740,259	+		DDA3937_RS16390	0.43	+2.3
3,740,259	+		DDA3937_RS16390	0.43	+0.1
3,740,259	+		DDA3937_RS16390	0.43	+0.8
3,740,259	+		DDA3937_RS16390	0.43	+2.9
3,740,259	+		DDA3937_RS16390	0.43	-0.7
3,740,259	+		DDA3937_RS16390	0.43	-0.0
3,740,259	+		DDA3937_RS16390	0.43	-1.0
3,740,260	-		DDA3937_RS16390	0.43	-1.6
3,740,260	-		DDA3937_RS16390	0.43	+3.6
3,740,260	-		DDA3937_RS16390	0.43	-0.8
3,740,260	-		DDA3937_RS16390	0.43	+3.1
3,740,260	-		DDA3937_RS16390	0.43	-0.1
3,740,261	+		DDA3937_RS16390	0.44	+0.9
3,740,262	-		DDA3937_RS16390	0.44	+0.3
3,740,267	+		DDA3937_RS16390	0.44	+0.6
3,740,267	+		DDA3937_RS16390	0.44	-0.8
3,740,267	+		DDA3937_RS16390	0.44	-0.6
3,740,349	+		DDA3937_RS16390	0.53	-0.8
3,740,349	+		DDA3937_RS16390	0.53	-3.4
3,740,350	-		DDA3937_RS16390	0.53	-0.2
3,740,484	+		DDA3937_RS16390	0.67	-3.8
3,740,484	+		DDA3937_RS16390	0.67	-0.2
3,740,484	+		DDA3937_RS16390	0.67	+1.2
3,740,485	-		DDA3937_RS16390	0.67	-0.0
3,740,485	-		DDA3937_RS16390	0.67	-1.3
3,740,485	-		DDA3937_RS16390	0.67	-1.4
3,740,526	-		DDA3937_RS16390	0.72	-0.5
3,740,590	+		DDA3937_RS16390	0.78	-0.8
3,740,590	+		DDA3937_RS16390	0.78	+0.0
3,740,590	+		DDA3937_RS16390	0.78	+0.0
3,740,590	+		DDA3937_RS16390	0.78	-0.2
3,740,591	-		DDA3937_RS16390	0.78	+0.2
3,740,591	-		DDA3937_RS16390	0.78	+1.2
3,740,591	-		DDA3937_RS16390	0.78	-0.3
3,740,596	-		DDA3937_RS16390	0.79	+0.4
3,740,727	+				-1.5
3,740,728	-				+0.9
3,740,728	-				-0.4
3,740,728	-				-2.1
3,740,728	-				+0.2
3,740,728	-				-1.5
3,740,761	-				-0.3
3,740,771	-				+2.1
3,740,788	-				+0.2
3,740,798	+				+0.5
3,740,799	-				-2.6
3,740,929	+		DDA3937_RS16395	0.17	+0.9
3,740,931	+		DDA3937_RS16395	0.17	+0.6
3,740,931	+		DDA3937_RS16395	0.17	+0.6
3,740,931	+		DDA3937_RS16395	0.17	-0.0
3,740,932	-		DDA3937_RS16395	0.17	-0.2
3,741,026	-		DDA3937_RS16395	0.29	+0.2
3,741,026	-		DDA3937_RS16395	0.29	-0.9
3,741,026	-		DDA3937_RS16395	0.29	+0.6
3,741,180	+		DDA3937_RS16395	0.47	+0.2
3,741,180	+		DDA3937_RS16395	0.47	-1.7
3,741,180	+		DDA3937_RS16395	0.47	-0.3
3,741,181	-		DDA3937_RS16395	0.47	-0.1
3,741,245	+		DDA3937_RS16395	0.55	+0.9
3,741,246	-		DDA3937_RS16395	0.55	+0.8
3,741,289	+		DDA3937_RS16395	0.61	+0.5
3,741,289	+		DDA3937_RS16395	0.61	-3.1
3,741,289	+				-0.4
3,741,289	+		DDA3937_RS16395	0.61	+0.0
3,741,290	-		DDA3937_RS16395	0.61	-0.4
3,741,290	-		DDA3937_RS16395	0.61	-1.1
3,741,328	+		DDA3937_RS16395	0.65	-1.7
3,741,328	+		DDA3937_RS16395	0.65	+0.0
3,741,329	-		DDA3937_RS16395	0.65	-1.1
3,741,330	+		DDA3937_RS16395	0.65	-1.4
3,741,330	+		DDA3937_RS16395	0.65	+0.2
3,741,331	-		DDA3937_RS16395	0.66	+1.3
3,741,331	-		DDA3937_RS16395	0.66	-0.5
3,741,496	+		DDA3937_RS16395	0.86	+0.5
3,741,678	+				-0.9
3,741,679	-				-1.5
3,741,690	+				+0.3
3,741,732	-				-0.2
3,741,732	-				-1.0
3,741,734	+				-0.1