Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15375

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,526,840	+				-0.8
3,526,841	-				+0.7
3,526,841	-				-1.3
3,526,841	-				+3.1
3,526,841	-				-1.5
3,526,867	+				-0.4
3,526,867	+				-1.0
3,526,867	+				-0.6
3,526,868	-				-0.0
3,526,868	-				-1.2
3,526,870	+				-0.9
3,526,871	-				-0.7
3,526,885	-				+1.4
3,526,896	+				-0.1
3,526,922	-				+2.1
3,526,972	+				+0.2
3,526,973	-				-2.8
3,526,973	-				+1.6
3,526,973	-				+0.5
3,526,973	-				+0.9
3,526,973	-				+0.1
3,526,973	-				-0.3
3,526,973	-				-0.1
3,526,973	-				-0.2
3,526,987	-				-0.0
3,526,987	-				-1.8
3,526,987	-				-3.0
3,527,010	+				+0.7
3,527,011	-				+0.8
3,527,027	+				+0.7
3,527,027	+				-1.2
3,527,048	+				+1.1
3,527,107	+		DDA3937_RS15370	0.16	+0.8
3,527,108	-		DDA3937_RS15370	0.16	-0.5
3,527,115	+		DDA3937_RS15370	0.17	+0.2
3,527,115	+		DDA3937_RS15370	0.17	-0.4
3,527,116	-		DDA3937_RS15370	0.18	-0.8
3,527,116	-		DDA3937_RS15370	0.18	+0.1
3,527,166	+		DDA3937_RS15370	0.25	-3.1
3,527,166	+		DDA3937_RS15370	0.25	+0.5
3,527,166	+		DDA3937_RS15370	0.25	-1.6
3,527,166	+		DDA3937_RS15370	0.25	-0.0
3,527,166	+		DDA3937_RS15370	0.25	+0.3
3,527,167	-		DDA3937_RS15370	0.25	-0.2
3,527,167	-				-0.9
3,527,167	-		DDA3937_RS15370	0.25	-0.3
3,527,167	-		DDA3937_RS15370	0.25	+0.8
3,527,168	+		DDA3937_RS15370	0.25	-0.4
3,527,169	-		DDA3937_RS15370	0.25	-0.9
3,527,169	-		DDA3937_RS15370	0.25	-0.5
3,527,204	+		DDA3937_RS15370	0.30	+1.5
3,527,310	+		DDA3937_RS15370	0.45	-0.4
3,527,311	-		DDA3937_RS15370	0.45	+0.9
3,527,311	-				+2.1
3,527,320	-		DDA3937_RS15370	0.46	-1.0
3,527,365	-				+2.1
3,527,378	-		DDA3937_RS15370	0.55	+0.7
3,527,463	+		DDA3937_RS15370	0.67	-2.8
3,527,468	+		DDA3937_RS15370	0.67	+1.1
3,527,513	+		DDA3937_RS15370	0.74	+1.1
3,527,513	+		DDA3937_RS15370	0.74	-1.8
3,527,514	-		DDA3937_RS15370	0.74	-2.0
3,527,549	-		DDA3937_RS15370	0.79	-0.2
3,527,625	+		DDA3937_RS15370	0.89	-0.6
3,527,625	+		DDA3937_RS15370	0.89	-0.6
3,527,626	-		DDA3937_RS15370	0.90	-1.8
3,527,626	-		DDA3937_RS15370	0.90	+1.0
3,527,627	+		DDA3937_RS15370	0.90	-1.2
3,527,627	+		DDA3937_RS15370	0.90	+2.3
3,527,627	+		DDA3937_RS15370	0.90	-0.1
3,527,627	+		DDA3937_RS15370	0.90	+0.2
3,527,627	+		DDA3937_RS15370	0.90	+0.4
3,527,628	-		DDA3937_RS15370	0.90	+0.7
3,527,628	-		DDA3937_RS15370	0.90	-0.5
3,527,651	+				-1.3
3,527,651	+				-1.7
3,527,651	+				-0.2
3,527,652	-				-0.8
3,527,654	+				-0.5
3,527,691	+				+0.3
3,527,713	+				-2.0
3,527,714	-				-0.5
3,527,731	-				-1.3
3,527,764	+				-0.4
3,527,764	+				-1.8
3,527,784	+				-1.4
3,527,784	+				-0.5
3,527,784	+				+0.1
3,527,785	-				-0.2
3,527,785	-				+0.3
3,527,785	-				+0.5
3,527,785	-				+3.4
3,527,785	-				-0.6
3,527,828	+				+0.1
3,527,828	+				-0.2
3,527,880	-				-0.2
3,528,092	+		DDA3937_RS15375	0.37	+2.7
3,528,098	+		DDA3937_RS15375	0.37	+1.4
3,528,099	-		DDA3937_RS15375	0.38	+0.2
3,528,099	-		DDA3937_RS15375	0.38	+0.6
3,528,127	+		DDA3937_RS15375	0.41	+0.0
3,528,127	+		DDA3937_RS15375	0.41	-0.0
3,528,127	+		DDA3937_RS15375	0.41	-2.7
3,528,127	+		DDA3937_RS15375	0.41	-0.1
3,528,128	-		DDA3937_RS15375	0.41	+0.6
3,528,128	-		DDA3937_RS15375	0.41	-0.7
3,528,128	-		DDA3937_RS15375	0.41	+0.0
3,528,128	-		DDA3937_RS15375	0.41	-1.1
3,528,128	-		DDA3937_RS15375	0.41	+2.5
3,528,131	+		DDA3937_RS15375	0.42	+1.0
3,528,131	+		DDA3937_RS15375	0.42	+0.3
3,528,131	+		DDA3937_RS15375	0.42	+0.1
3,528,131	+		DDA3937_RS15375	0.42	-1.2
3,528,165	+		DDA3937_RS15375	0.46	+0.3
3,528,165	+		DDA3937_RS15375	0.46	-0.3
3,528,166	-		DDA3937_RS15375	0.46	-0.3
3,528,256	+		DDA3937_RS15375	0.58	+1.1
3,528,256	+		DDA3937_RS15375	0.58	+0.1
3,528,256	+		DDA3937_RS15375	0.58	-0.0
3,528,256	+		DDA3937_RS15375	0.58	+1.6
3,528,256	+		DDA3937_RS15375	0.58	-0.5
3,528,257	-		DDA3937_RS15375	0.58	-1.4
3,528,257	-		DDA3937_RS15375	0.58	-0.5
3,528,257	-		DDA3937_RS15375	0.58	+1.1
3,528,257	-		DDA3937_RS15375	0.58	+3.5
3,528,257	-		DDA3937_RS15375	0.58	+0.7
3,528,257	-		DDA3937_RS15375	0.58	-0.3
3,528,257	-		DDA3937_RS15375	0.58	+0.9
3,528,257	-		DDA3937_RS15375	0.58	-0.5
3,528,302	-		DDA3937_RS15375	0.64	+0.6
3,528,391	+		DDA3937_RS15375	0.75	+1.7
3,528,391	+		DDA3937_RS15375	0.75	+0.2
3,528,391	+		DDA3937_RS15375	0.75	+0.4
3,528,392	-		DDA3937_RS15375	0.75	+0.2
3,528,577	+				-0.1
3,528,578	-				-0.7
3,528,578	-				+0.5
3,528,578	-				-2.3
3,528,578	-				+1.0
3,528,611	+				-1.9
3,528,611	+				-0.5
3,528,611	+				-1.5
3,528,612	-				-0.2
3,528,612	-				+0.6
3,528,612	-				+1.7
3,528,617	-				-0.6
3,528,667	+				+0.8
3,528,667	+				-1.5
3,528,668	-				-1.2
3,528,668	-				-0.6
3,528,669	+				+1.3
3,528,669	+				+0.1
3,528,669	+				+4.2
3,528,669	+				-1.2
3,528,669	+				-1.0
3,528,669	+				-0.5
3,528,669	+				+0.6
3,528,669	+				+0.9
3,528,670	-				+0.8
3,528,670	-				-0.8
3,528,670	-				-0.5
3,528,670	-				-1.1
3,528,670	-				+0.5
3,528,695	+				-0.1
3,528,695	+				-0.6
3,528,695	+				+0.4
3,528,696	-				-1.0
3,528,697	+				+0.5
3,528,714	+				-0.9
3,528,714	+				+0.8
3,528,714	+				+0.4
3,528,714	+				+0.2
3,528,715	-				-0.9
3,528,715	-				+0.0
3,528,771	-				-0.7
3,528,771	-				-0.9
3,528,801	+				+3.9
3,528,801	+				-1.5
3,528,801	+				+1.3
3,528,802	-				+0.1
3,528,802	-				-0.1
3,528,802	-				-0.7
3,528,802	-				+6.5
3,528,802	-				-0.5
3,528,802	-				-0.7
3,528,802	-				+0.2
3,528,802	-				+0.1
3,528,802	-				+0.3
3,528,860	-				-1.2
3,528,863	+				+0.0
3,528,864	-				-0.3
3,528,864	-				-0.6
3,528,864	-				-0.7
3,528,883	+				+1.0
3,528,911	+				-1.2
3,528,912	-				+0.9
3,528,912	-				+1.8
3,528,912	-				-0.8
3,528,918	-				+0.3
3,528,935	+		DDA3937_RS15380	0.10	+1.1
3,528,935	+		DDA3937_RS15380	0.10	-0.5
3,528,937	+		DDA3937_RS15380	0.10	-0.7
3,528,937	+		DDA3937_RS15380	0.10	+0.1
3,528,938	-				+1.7
3,528,960	+		DDA3937_RS15380	0.12	-1.2
3,528,960	+		DDA3937_RS15380	0.12	+0.3
3,528,960	+		DDA3937_RS15380	0.12	-0.5
3,528,961	-		DDA3937_RS15380	0.12	-0.8
3,528,961	-		DDA3937_RS15380	0.12	+0.0
3,528,961	-		DDA3937_RS15380	0.12	-2.7
3,528,982	-		DDA3937_RS15380	0.13	-0.5
3,528,982	-		DDA3937_RS15380	0.13	+2.1
3,529,009	+				-0.9
3,529,010	-		DDA3937_RS15380	0.15	+0.0
3,529,010	-		DDA3937_RS15380	0.15	+0.4
3,529,010	-		DDA3937_RS15380	0.15	+4.0
3,529,023	+		DDA3937_RS15380	0.15	-0.9
3,529,024	-		DDA3937_RS15380	0.16	-1.9
3,529,024	-		DDA3937_RS15380	0.16	-0.3
3,529,043	+		DDA3937_RS15380	0.17	+1.5
3,529,049	+		DDA3937_RS15380	0.17	+0.5
3,529,057	+		DDA3937_RS15380	0.18	-3.1
3,529,057	+		DDA3937_RS15380	0.18	+0.7
3,529,058	-		DDA3937_RS15380	0.18	+0.6
3,529,188	+		DDA3937_RS15380	0.25	-0.6
3,529,192	+		DDA3937_RS15380	0.26	+1.4
3,529,192	+		DDA3937_RS15380	0.26	-0.5
3,529,192	+		DDA3937_RS15380	0.26	-0.1
3,529,192	+		DDA3937_RS15380	0.26	-1.9
3,529,193	-		DDA3937_RS15380	0.26	+1.1
3,529,193	-		DDA3937_RS15380	0.26	+0.0
3,529,193	-		DDA3937_RS15380	0.26	+0.5
3,529,193	-		DDA3937_RS15380	0.26	-0.6
3,529,193	-		DDA3937_RS15380	0.26	-0.3
3,529,193	-		DDA3937_RS15380	0.26	-2.2
3,529,196	+		DDA3937_RS15380	0.26	+0.6
3,529,197	-		DDA3937_RS15380	0.26	-1.3
3,529,200	-		DDA3937_RS15380	0.26	-1.0
3,529,200	-		DDA3937_RS15380	0.26	+0.1
3,529,220	+		DDA3937_RS15380	0.27	-0.2
3,529,220	+		DDA3937_RS15380	0.27	+0.1
3,529,221	-		DDA3937_RS15380	0.27	-0.0
3,529,227	-		DDA3937_RS15380	0.28	+0.1
3,529,269	+		DDA3937_RS15380	0.30	+0.9
3,529,283	+		DDA3937_RS15380	0.31	-0.5
3,529,284	-		DDA3937_RS15380	0.31	+0.7
3,529,338	+		DDA3937_RS15380	0.34	+1.3
3,529,349	+		DDA3937_RS15380	0.35	-1.2
3,529,357	+		DDA3937_RS15380	0.35	-0.9
3,529,358	-		DDA3937_RS15380	0.36	+0.1
3,529,430	+		DDA3937_RS15380	0.40	-1.7
3,529,442	+		DDA3937_RS15380	0.41	+0.1
3,529,443	-		DDA3937_RS15380	0.41	+1.7
3,529,444	+		DDA3937_RS15380	0.41	-0.0
3,529,468	+		DDA3937_RS15380	0.42	-1.9
3,529,478	+		DDA3937_RS15380	0.43	-0.5
3,529,500	+		DDA3937_RS15380	0.44	+0.3
3,529,501	-		DDA3937_RS15380	0.44	-1.0
3,529,503	-		DDA3937_RS15380	0.44	-0.0
3,529,504	+				-0.9
3,529,505	-		DDA3937_RS15380	0.44	+1.5
3,529,505	-		DDA3937_RS15380	0.44	-0.4
3,529,532	+		DDA3937_RS15380	0.46	+1.1
3,529,532	+		DDA3937_RS15380	0.46	-0.3
3,529,532	+		DDA3937_RS15380	0.46	-1.5
3,529,533	-		DDA3937_RS15380	0.46	+1.1
3,529,533	-		DDA3937_RS15380	0.46	+0.7
3,529,535	+		DDA3937_RS15380	0.46	+0.5
3,529,536	-		DDA3937_RS15380	0.46	-0.2
3,529,538	+		DDA3937_RS15380	0.46	+0.3
3,529,543	+		DDA3937_RS15380	0.47	-0.7
3,529,553	+		DDA3937_RS15380	0.47	+0.7
3,529,554	-		DDA3937_RS15380	0.47	-0.9
3,529,554	-		DDA3937_RS15380	0.47	+0.7