Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14930

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,424,736	+		DDA3937_RS14925	0.46	-1.3
3,424,881	-		DDA3937_RS14925	0.57	-1.5
3,424,933	+		DDA3937_RS14925	0.61	-0.9
3,424,933	+		DDA3937_RS14925	0.61	-1.2
3,424,942	+		DDA3937_RS14925	0.62	-2.0
3,424,942	+		DDA3937_RS14925	0.62	-0.6
3,424,942	+				-0.9
3,424,943	-		DDA3937_RS14925	0.62	-1.5
3,425,078	+		DDA3937_RS14925	0.72	-0.6
3,425,079	-		DDA3937_RS14925	0.72	-2.2
3,425,140	+		DDA3937_RS14925	0.77	-1.3
3,425,140	+		DDA3937_RS14925	0.77	-0.9
3,425,141	-		DDA3937_RS14925	0.77	+0.5
3,425,141	-		DDA3937_RS14925	0.77	-0.8
3,425,236	+		DDA3937_RS14925	0.84	-2.2
3,425,237	-		DDA3937_RS14925	0.85	-0.8
3,425,237	-		DDA3937_RS14925	0.85	+2.6
3,425,237	-		DDA3937_RS14925	0.85	-0.8
3,425,284	+		DDA3937_RS14925	0.88	+1.4
3,425,284	+		DDA3937_RS14925	0.88	+0.5
3,425,285	-		DDA3937_RS14925	0.88	-0.6
3,425,285	-		DDA3937_RS14925	0.88	+1.4
3,425,285	-		DDA3937_RS14925	0.88	+0.3
3,425,299	-		DDA3937_RS14925	0.89	-0.4
3,425,433	-				-1.4
3,425,453	-				-1.0
3,425,453	-				-0.7
3,425,488	+				-0.9
3,425,604	+				+1.1
3,425,605	-				+1.3
3,425,605	-				-2.3
3,425,792	+		DDA3937_RS14930	0.22	-2.8
3,425,864	+		DDA3937_RS14930	0.28	+0.2
3,425,864	+		DDA3937_RS14930	0.28	-1.2
3,425,864	+		DDA3937_RS14930	0.28	-0.7
3,425,865	-		DDA3937_RS14930	0.28	-2.7
3,425,865	-		DDA3937_RS14930	0.28	-0.6
3,425,934	-		DDA3937_RS14930	0.34	+0.4
3,426,075	-		DDA3937_RS14930	0.45	-1.9
3,426,075	-		DDA3937_RS14930	0.45	-0.8
3,426,177	+		DDA3937_RS14930	0.53	-1.5
3,426,186	+		DDA3937_RS14930	0.54	-0.2
3,426,186	+		DDA3937_RS14930	0.54	-2.2
3,426,187	-		DDA3937_RS14930	0.54	-0.1
3,426,187	-		DDA3937_RS14930	0.54	-0.9
3,426,187	-		DDA3937_RS14930	0.54	+0.0
3,426,187	-		DDA3937_RS14930	0.54	-2.2
3,426,187	-		DDA3937_RS14930	0.54	-1.1
3,426,189	-		DDA3937_RS14930	0.54	-0.9
3,426,221	+		DDA3937_RS14930	0.57	-1.4
3,426,222	-		DDA3937_RS14930	0.57	+0.0
3,426,222	-		DDA3937_RS14930	0.57	-1.5
3,426,224	+		DDA3937_RS14930	0.57	-0.3
3,426,224	+		DDA3937_RS14930	0.57	+0.3
3,426,224	+		DDA3937_RS14930	0.57	+2.7
3,426,338	+		DDA3937_RS14930	0.66	-0.9
3,426,339	-		DDA3937_RS14930	0.66	+1.0
3,426,377	+		DDA3937_RS14930	0.69	-1.6
3,426,377	+		DDA3937_RS14930	0.69	-1.6
3,426,377	+		DDA3937_RS14930	0.69	-0.7
3,426,378	-		DDA3937_RS14930	0.69	+0.1
3,426,378	-		DDA3937_RS14930	0.69	+0.2
3,426,378	-		DDA3937_RS14930	0.69	-0.0
3,426,378	-		DDA3937_RS14930	0.69	-0.9
3,426,378	-		DDA3937_RS14930	0.69	-0.6
3,426,378	-		DDA3937_RS14930	0.69	-1.9
3,426,378	-		DDA3937_RS14930	0.69	-2.5
3,426,378	-		DDA3937_RS14930	0.69	-0.6
3,426,379	+		DDA3937_RS14930	0.69	-1.4
3,426,379	+		DDA3937_RS14930	0.69	-0.6
3,426,380	-		DDA3937_RS14930	0.70	-0.0
3,426,380	-		DDA3937_RS14930	0.70	-1.3
3,426,380	-				-1.7
3,426,380	-		DDA3937_RS14930	0.70	+1.1
3,426,380	-		DDA3937_RS14930	0.70	-0.6
3,426,569	+		DDA3937_RS14930	0.85	+0.6
3,426,569	+		DDA3937_RS14930	0.85	-0.2
3,426,779	+				-0.2
3,426,779	+				-1.6
3,426,779	+				-1.1
3,426,780	-				-1.2
3,426,780	-				-1.7
3,426,780	-				-0.7
3,426,780	-				-0.7
3,426,780	-				-1.2
3,426,780	-				-1.5
3,426,819	+				-0.9
3,426,820	-				-0.6
3,426,820	-				+0.4
3,426,820	-				-0.1
3,426,838	+				+0.3
3,426,839	-				-0.1
3,426,839	-				-0.9
3,426,839	-				+1.4
3,426,840	+				-2.4
3,426,840	+				-0.8
3,426,840	+				-1.5
3,426,840	+				-0.8
3,426,841	-				-0.4
3,426,841	-				-0.5
3,426,841	-				-0.9
3,426,841	-				+0.6
3,426,841	-				-0.3
3,426,883	+				-0.5
3,426,883	+				-1.5
3,426,883	+				+0.8
3,426,883	+				-0.6
3,426,883	+				-0.3
3,426,883	+				-0.7
3,426,883	+				-0.4
3,426,883	+				-1.2
3,426,883	+				-0.8
3,426,883	+				+0.1
3,426,884	-				+0.0
3,426,884	-				-1.5
3,426,884	-				-0.5
3,426,884	-				+0.7
3,426,884	-				-0.8
3,426,900	-				-2.6
3,426,905	+				-0.2
3,426,905	+				+0.4
3,426,906	-				-0.4
3,426,925	+				-2.7
3,426,925	+				-1.2
3,426,964	-				-0.9
3,426,971	+				-0.6
3,426,972	-				-1.4
3,426,986	+				-1.2
3,426,986	+				+0.3
3,426,986	+				+0.1
3,426,988	+				+3.2
3,426,988	+				-1.1
3,426,989	-				+1.3
3,427,038	+				-2.4
3,427,038	+				+0.4
3,427,038	+				+0.5
3,427,039	-				-0.1
3,427,039	-				-1.5
3,427,039	-				+0.3
3,427,039	-				-0.9
3,427,042	+				-0.9
3,427,042	+				-0.4
3,427,042	+				-0.4
3,427,042	+				+0.9
3,427,042	+				-0.7
3,427,042	+				+0.1
3,427,042	+				+0.1
3,427,042	+				-1.1
3,427,042	+				-1.6
3,427,042	+				+1.1
3,427,042	+				-2.8
3,427,043	-				+0.1
3,427,043	-				-0.7
3,427,043	-				+1.3
3,427,043	-				+0.2
3,427,043	-				-0.6
3,427,043	-				+0.5
3,427,043	-				-0.2
3,427,045	+				-0.6
3,427,045	+				-0.4
3,427,046	-				-1.9
3,427,046	-				-0.4
3,427,090	+				-0.9
3,427,127	+				-0.9
3,427,127	+				-0.3
3,427,127	+				-1.3
3,427,128	-				-1.5
3,427,128	-				+1.1
3,427,128	-				-0.5
3,427,128	-				+1.5
3,427,128	-				-0.9
3,427,180	-				-1.5
3,427,180	-				-0.9
3,427,245	+		DDA3937_RS14935	0.12	-0.5
3,427,245	+				+0.1
3,427,245	+		DDA3937_RS14935	0.12	-0.3
3,427,246	-		DDA3937_RS14935	0.12	-0.5
3,427,355	+		DDA3937_RS14935	0.21	-0.1
3,427,355	+		DDA3937_RS14935	0.21	-0.4
3,427,355	+		DDA3937_RS14935	0.21	-0.1
3,427,366	+		DDA3937_RS14935	0.22	-0.1
3,427,367	-		DDA3937_RS14935	0.23	-0.5
3,427,510	-		DDA3937_RS14935	0.35	-0.9
3,427,681	+		DDA3937_RS14935	0.51	-1.8
3,427,681	+		DDA3937_RS14935	0.51	-0.8
3,427,681	+				+0.7
3,427,681	+				+1.1
3,427,681	+		DDA3937_RS14935	0.51	+0.8
3,427,681	+		DDA3937_RS14935	0.51	-0.7
3,427,681	+		DDA3937_RS14935	0.51	-0.7
3,427,681	+		DDA3937_RS14935	0.51	-0.3
3,427,681	+		DDA3937_RS14935	0.51	-1.1
3,427,681	+		DDA3937_RS14935	0.51	-1.5
3,427,681	+		DDA3937_RS14935	0.51	-0.6
3,427,681	+		DDA3937_RS14935	0.51	-0.5
3,427,682	-		DDA3937_RS14935	0.51	-0.1
3,427,682	-		DDA3937_RS14935	0.51	-0.2
3,427,682	-		DDA3937_RS14935	0.51	-1.7
3,427,682	-		DDA3937_RS14935	0.51	-0.7
3,427,682	-		DDA3937_RS14935	0.51	-1.7
3,427,682	-		DDA3937_RS14935	0.51	+0.1
3,427,682	-		DDA3937_RS14935	0.51	-3.4
3,427,682	-		DDA3937_RS14935	0.51	-0.3
3,427,682	-		DDA3937_RS14935	0.51	-1.2
3,427,682	-		DDA3937_RS14935	0.51	-0.2
3,427,682	-		DDA3937_RS14935	0.51	-2.1
3,427,682	-		DDA3937_RS14935	0.51	-0.5
3,427,682	-		DDA3937_RS14935	0.51	-1.6
3,427,682	-		DDA3937_RS14935	0.51	-0.9
3,427,682	-		DDA3937_RS14935	0.51	-1.5