Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14550

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,330,357	+		DDA3937_RS14540	0.65	+3.1
3,330,357	+		DDA3937_RS14540	0.65	-0.4
3,330,357	+		DDA3937_RS14540	0.65	-0.0
3,330,358	-		DDA3937_RS14540	0.65	-0.9
3,330,358	-				-1.0
3,330,363	-		DDA3937_RS14540	0.66	-1.6
3,330,363	-				+1.6
3,330,363	-		DDA3937_RS14540	0.66	-0.4
3,330,424	-		DDA3937_RS14540	0.75	+0.1
3,330,444	+		DDA3937_RS14540	0.78	-0.1
3,330,523	+				+1.0
3,330,539	-				+1.6
3,330,565	+				-0.0
3,330,566	-				-0.6
3,330,566	-				-0.6
3,330,571	+				-0.6
3,330,621	-				+0.5
3,330,621	-				+0.7
3,330,671	-				+1.0
3,330,676	+		DDA3937_RS14545	0.10	-0.2
3,330,693	+		DDA3937_RS14545	0.13	-0.9
3,330,693	+		DDA3937_RS14545	0.13	+0.3
3,330,694	-		DDA3937_RS14545	0.13	+0.5
3,330,694	-		DDA3937_RS14545	0.13	+0.1
3,330,694	-		DDA3937_RS14545	0.13	-0.0
3,330,720	+		DDA3937_RS14545	0.17	+0.7
3,330,720	+		DDA3937_RS14545	0.17	-0.0
3,330,721	-		DDA3937_RS14545	0.17	-0.2
3,330,806	-		DDA3937_RS14545	0.30	+0.1
3,330,987	+		DDA3937_RS14545	0.56	-0.8
3,331,188	+		DDA3937_RS14545	0.86	+0.4
3,331,188	+		DDA3937_RS14545	0.86	+1.2
3,331,188	+		DDA3937_RS14545	0.86	-1.0
3,331,188	+		DDA3937_RS14545	0.86	-1.5
3,331,188	+		DDA3937_RS14545	0.86	-1.3
3,331,189	-		DDA3937_RS14545	0.86	-0.8
3,331,189	-		DDA3937_RS14545	0.86	-0.6
3,331,189	-		DDA3937_RS14545	0.86	-1.3
3,331,189	-		DDA3937_RS14545	0.86	-0.8
3,331,189	-		DDA3937_RS14545	0.86	+0.5
3,331,191	+		DDA3937_RS14545	0.86	-0.8
3,331,192	-		DDA3937_RS14545	0.87	+0.2
3,331,192	-		DDA3937_RS14545	0.87	+0.1
3,331,265	+				-2.0
3,331,265	+				-0.3
3,331,265	+				-0.0
3,331,266	-				-0.7
3,331,266	-				-0.6
3,331,266	-				-1.8
3,331,266	-				-0.6
3,331,319	+				-0.4
3,331,320	-				-0.0
3,331,434	-				+0.2
3,331,462	+				+1.0
3,331,462	+				+0.3
3,331,462	+				-1.4
3,331,603	+		DDA3937_RS14550	0.20	-0.5
3,331,603	+		DDA3937_RS14550	0.20	-1.0
3,331,603	+		DDA3937_RS14550	0.20	-0.5
3,331,604	-		DDA3937_RS14550	0.20	+0.4
3,331,606	+		DDA3937_RS14550	0.20	-0.0
3,331,607	-		DDA3937_RS14550	0.20	-0.1
3,331,639	+				-0.6
3,331,639	+		DDA3937_RS14550	0.22	+2.2
3,331,639	+		DDA3937_RS14550	0.22	-0.2
3,331,640	-		DDA3937_RS14550	0.22	+0.1
3,331,640	-		DDA3937_RS14550	0.22	+0.4
3,331,640	-		DDA3937_RS14550	0.22	+0.7
3,331,640	-		DDA3937_RS14550	0.22	+1.0
3,331,640	-		DDA3937_RS14550	0.22	+1.0
3,331,640	-		DDA3937_RS14550	0.22	+1.0
3,331,640	-		DDA3937_RS14550	0.22	+0.2
3,331,640	-		DDA3937_RS14550	0.22	+1.1
3,331,640	-		DDA3937_RS14550	0.22	-0.3
3,331,836	+		DDA3937_RS14550	0.36	-2.2
3,331,858	+		DDA3937_RS14550	0.38	+2.0
3,331,859	-		DDA3937_RS14550	0.38	-0.6
3,331,859	-		DDA3937_RS14550	0.38	-0.4
3,331,883	+		DDA3937_RS14550	0.39	+0.6
3,331,884	-		DDA3937_RS14550	0.40	-0.4
3,331,886	-		DDA3937_RS14550	0.40	-0.1
3,331,886	-		DDA3937_RS14550	0.40	-0.0
3,331,925	+		DDA3937_RS14550	0.42	-1.0
3,331,946	+		DDA3937_RS14550	0.44	-0.3
3,331,981	+		DDA3937_RS14550	0.46	-0.1
3,331,981	+		DDA3937_RS14550	0.46	-0.4
3,331,981	+		DDA3937_RS14550	0.46	+0.2
3,331,982	-		DDA3937_RS14550	0.46	-0.9
3,331,982	-		DDA3937_RS14550	0.46	+0.0
3,331,982	-		DDA3937_RS14550	0.46	+3.5
3,331,982	-		DDA3937_RS14550	0.46	-1.3
3,332,291	+		DDA3937_RS14550	0.68	-0.1
3,332,292	-		DDA3937_RS14550	0.68	+0.8
3,332,427	+		DDA3937_RS14550	0.78	+0.2
3,332,428	-		DDA3937_RS14550	0.78	+0.5
3,332,532	-		DDA3937_RS14550	0.85	-0.8
3,332,756	-				+0.7
3,332,853	+				+0.5
3,332,853	+				+1.7
3,332,854	-				-1.2
3,332,907	+				+0.1
3,332,909	+				-0.2
3,332,985	+				-0.3
3,332,986	-				-2.3
3,333,010	-				-1.5
3,333,212	+		DDA3937_RS14555	0.31	-1.7
3,333,212	+		DDA3937_RS14555	0.31	-0.0
3,333,213	-		DDA3937_RS14555	0.31	-1.8
3,333,314	-		DDA3937_RS14555	0.42	+0.1
3,333,314	-		DDA3937_RS14555	0.42	-1.1
3,333,346	+		DDA3937_RS14555	0.46	-0.8
3,333,356	+		DDA3937_RS14555	0.47	-0.0
3,333,356	+		DDA3937_RS14555	0.47	+0.0
3,333,356	+		DDA3937_RS14555	0.47	-0.6
3,333,357	-		DDA3937_RS14555	0.47	-0.6
3,333,511	+		DDA3937_RS14555	0.64	+0.2
3,333,511	+		DDA3937_RS14555	0.64	-1.1
3,333,512	-		DDA3937_RS14555	0.64	-1.3
3,333,611	+		DDA3937_RS14555	0.75	-0.3
3,333,612	-		DDA3937_RS14555	0.75	-1.2
3,333,620	+		DDA3937_RS14555	0.76	+1.6
3,333,620	+		DDA3937_RS14555	0.76	-1.2
3,333,620	+		DDA3937_RS14555	0.76	-0.3
3,333,620	+		DDA3937_RS14555	0.76	+0.5
3,333,620	+		DDA3937_RS14555	0.76	+0.7
3,333,621	-		DDA3937_RS14555	0.76	-0.2
3,333,621	-		DDA3937_RS14555	0.76	-0.5
3,333,658	+		DDA3937_RS14555	0.81	+0.2
3,333,658	+		DDA3937_RS14555	0.81	+1.9
3,333,658	+		DDA3937_RS14555	0.81	+0.2
3,333,659	-		DDA3937_RS14555	0.81	+0.1
3,333,662	+		DDA3937_RS14555	0.81	+5.9
3,333,662	+		DDA3937_RS14555	0.81	-0.2
3,333,662	+		DDA3937_RS14555	0.81	+1.0
3,333,662	+		DDA3937_RS14555	0.81	-0.3
3,333,663	-		DDA3937_RS14555	0.81	+0.4
3,333,663	-		DDA3937_RS14555	0.81	-1.6
3,333,663	-		DDA3937_RS14555	0.81	+0.4
3,333,663	-		DDA3937_RS14555	0.81	-0.0
3,333,663	-		DDA3937_RS14555	0.81	-0.8
3,333,663	-		DDA3937_RS14555	0.81	+0.7
3,333,663	-		DDA3937_RS14555	0.81	+0.5
3,333,674	-		DDA3937_RS14555	0.82	+1.3
3,333,674	-		DDA3937_RS14555	0.82	+0.2
3,333,674	-		DDA3937_RS14555	0.82	-0.6
3,333,675	+		DDA3937_RS14555	0.82	-1.0
3,333,675	+		DDA3937_RS14555	0.82	+1.0
3,333,736	+		DDA3937_RS14555	0.89	-0.5
3,333,736	+		DDA3937_RS14555	0.89	-1.4
3,333,737	-		DDA3937_RS14555	0.89	-0.6
3,333,737	-		DDA3937_RS14555	0.89	+0.3
3,333,737	-		DDA3937_RS14555	0.89	+2.4