Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13510

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,076,644	+		DDA3937_RS13505	0.54	+0.1
3,076,679	+		DDA3937_RS13505	0.56	+2.3
3,076,679	+		DDA3937_RS13505	0.56	+0.1
3,076,680	-		DDA3937_RS13505	0.56	+0.6
3,076,680	-		DDA3937_RS13505	0.56	-0.1
3,076,882	+		DDA3937_RS13505	0.65	-0.6
3,076,883	-		DDA3937_RS13505	0.65	+1.6
3,076,883	-		DDA3937_RS13505	0.65	-0.2
3,076,883	-		DDA3937_RS13505	0.65	+2.2
3,076,883	-		DDA3937_RS13505	0.65	+0.5
3,076,910	+		DDA3937_RS13505	0.67	+1.3
3,076,911	-		DDA3937_RS13505	0.67	-2.7
3,076,911	-		DDA3937_RS13505	0.67	+0.4
3,076,923	+		DDA3937_RS13505	0.67	+0.6
3,076,923	+		DDA3937_RS13505	0.67	-0.6
3,076,923	+		DDA3937_RS13505	0.67	-1.9
3,076,924	-		DDA3937_RS13505	0.67	+1.9
3,076,924	-		DDA3937_RS13505	0.67	-1.7
3,076,924	-		DDA3937_RS13505	0.67	-1.7
3,076,924	-		DDA3937_RS13505	0.67	+0.0
3,076,924	-		DDA3937_RS13505	0.67	+0.3
3,076,929	+		DDA3937_RS13505	0.68	+0.1
3,076,930	-		DDA3937_RS13505	0.68	-2.1
3,076,930	-		DDA3937_RS13505	0.68	-0.9
3,076,932	+		DDA3937_RS13505	0.68	+0.5
3,076,932	+		DDA3937_RS13505	0.68	-0.5
3,076,932	+		DDA3937_RS13505	0.68	-3.2
3,076,932	+		DDA3937_RS13505	0.68	+0.2
3,076,933	-		DDA3937_RS13505	0.68	+0.5
3,076,933	-		DDA3937_RS13505	0.68	+0.1
3,076,933	-		DDA3937_RS13505	0.68	-1.1
3,076,933	-		DDA3937_RS13505	0.68	-0.2
3,076,955	+		DDA3937_RS13505	0.69	-0.8
3,076,961	+		DDA3937_RS13505	0.69	+0.5
3,076,962	-		DDA3937_RS13505	0.69	+2.3
3,076,962	-		DDA3937_RS13505	0.69	-1.3
3,077,001	-		DDA3937_RS13505	0.71	+0.1
3,077,016	-		DDA3937_RS13505	0.72	-1.4
3,077,016	-		DDA3937_RS13505	0.72	-0.2
3,077,023	+		DDA3937_RS13505	0.72	+0.8
3,077,129	+		DDA3937_RS13505	0.77	-2.1
3,077,142	-		DDA3937_RS13505	0.78	+0.8
3,077,192	+		DDA3937_RS13505	0.80	+2.2
3,077,192	+		DDA3937_RS13505	0.80	+0.7
3,077,192	+		DDA3937_RS13505	0.80	-0.9
3,077,193	-		DDA3937_RS13505	0.80	+0.2
3,077,193	-		DDA3937_RS13505	0.80	+0.0
3,077,193	-		DDA3937_RS13505	0.80	+0.1
3,077,193	-		DDA3937_RS13505	0.80	-3.4
3,077,228	+		DDA3937_RS13505	0.82	-0.4
3,077,229	-		DDA3937_RS13505	0.82	+0.8
3,077,415	-				+0.1
3,077,462	+				-0.6
3,077,463	-				+0.3
3,077,463	-				-1.9
3,077,463	-				-1.1
3,077,463	-				-0.1
3,077,463	-				+0.1
3,077,523	+				+1.1
3,077,523	+				-0.7
3,077,567	+				-0.0
3,077,567	+				+1.1
3,077,567	+				+0.5
3,077,568	-				-0.1
3,077,568	-				-0.7
3,077,650	+				+0.1
3,077,700	+				+0.5
3,077,700	+				+1.6
3,077,708	+				-1.4
3,077,741	+		DDA3937_RS13510	0.12	-0.3
3,077,741	+		DDA3937_RS13510	0.12	+0.1
3,077,741	+		DDA3937_RS13510	0.12	-1.1
3,077,742	-		DDA3937_RS13510	0.12	+1.8
3,077,743	+		DDA3937_RS13510	0.12	-0.3
3,077,775	+		DDA3937_RS13510	0.15	+0.9
3,077,776	-		DDA3937_RS13510	0.15	+0.2
3,077,783	+		DDA3937_RS13510	0.16	-0.3
3,077,784	-		DDA3937_RS13510	0.16	-0.0
3,077,821	+		DDA3937_RS13510	0.19	+0.0
3,077,823	+		DDA3937_RS13510	0.19	-2.4
3,077,823	+		DDA3937_RS13510	0.19	+0.3
3,077,823	+		DDA3937_RS13510	0.19	-1.7
3,077,823	+		DDA3937_RS13510	0.19	-1.0
3,077,823	+		DDA3937_RS13510	0.19	-0.4
3,077,823	+		DDA3937_RS13510	0.19	+0.5
3,077,824	-		DDA3937_RS13510	0.20	-0.0
3,077,824	-		DDA3937_RS13510	0.20	-1.9
3,077,824	-		DDA3937_RS13510	0.20	-1.7
3,077,824	-		DDA3937_RS13510	0.20	+0.0
3,077,824	-		DDA3937_RS13510	0.20	+0.2
3,077,861	-		DDA3937_RS13510	0.23	+0.2
3,077,861	-		DDA3937_RS13510	0.23	-1.6
3,077,915	+		DDA3937_RS13510	0.27	-0.0
3,077,915	+		DDA3937_RS13510	0.27	-1.4
3,077,915	+		DDA3937_RS13510	0.27	+0.4
3,077,915	+		DDA3937_RS13510	0.27	-0.2
3,077,915	+		DDA3937_RS13510	0.27	+0.4
3,077,915	+		DDA3937_RS13510	0.27	+0.0
3,077,915	+		DDA3937_RS13510	0.27	+0.4
3,077,915	+		DDA3937_RS13510	0.27	-0.2
3,077,915	+		DDA3937_RS13510	0.27	+0.2
3,077,916	-		DDA3937_RS13510	0.28	-0.0
3,077,916	-		DDA3937_RS13510	0.28	+0.4
3,077,920	+		DDA3937_RS13510	0.28	+0.7
3,077,921	-		DDA3937_RS13510	0.28	-0.9
3,077,921	-		DDA3937_RS13510	0.28	+0.3
3,077,921	-		DDA3937_RS13510	0.28	+0.3
3,077,934	-		DDA3937_RS13510	0.29	+0.0
3,077,934	-		DDA3937_RS13510	0.29	+0.5
3,077,950	-		DDA3937_RS13510	0.30	+0.3
3,077,950	-		DDA3937_RS13510	0.30	+0.3
3,077,950	-		DDA3937_RS13510	0.30	+0.7
3,078,088	-		DDA3937_RS13510	0.42	+0.2
3,078,088	-		DDA3937_RS13510	0.42	+0.5
3,078,099	+		DDA3937_RS13510	0.43	-1.1
3,078,100	-		DDA3937_RS13510	0.43	+0.0
3,078,100	-		DDA3937_RS13510	0.43	-1.0
3,078,102	+		DDA3937_RS13510	0.44	+0.0
3,078,102	+		DDA3937_RS13510	0.44	-1.0
3,078,104	-		DDA3937_RS13510	0.44	+0.2
3,078,112	+		DDA3937_RS13510	0.45	-1.0
3,078,112	+		DDA3937_RS13510	0.45	-0.6
3,078,113	-		DDA3937_RS13510	0.45	-1.0
3,078,113	-		DDA3937_RS13510	0.45	-0.7
3,078,243	+		DDA3937_RS13510	0.56	+0.0
3,078,243	+		DDA3937_RS13510	0.56	+0.2
3,078,243	+		DDA3937_RS13510	0.56	-0.9
3,078,244	-		DDA3937_RS13510	0.56	-0.5
3,078,244	-		DDA3937_RS13510	0.56	+0.9
3,078,244	-		DDA3937_RS13510	0.56	-1.9
3,078,274	-		DDA3937_RS13510	0.59	-0.7
3,078,309	+		DDA3937_RS13510	0.62	-1.0
3,078,309	+		DDA3937_RS13510	0.62	+0.6
3,078,313	+		DDA3937_RS13510	0.62	+0.6
3,078,313	+		DDA3937_RS13510	0.62	-0.4
3,078,325	+		DDA3937_RS13510	0.63	+0.2
3,078,325	+		DDA3937_RS13510	0.63	+0.9
3,078,325	+		DDA3937_RS13510	0.63	-0.1
3,078,326	-		DDA3937_RS13510	0.63	-0.5
3,078,326	-		DDA3937_RS13510	0.63	+0.9
3,078,326	-		DDA3937_RS13510	0.63	+0.9
3,078,326	-		DDA3937_RS13510	0.63	+0.1
3,078,326	-		DDA3937_RS13510	0.63	+3.3
3,078,342	+		DDA3937_RS13510	0.64	-0.7
3,078,342	+		DDA3937_RS13510	0.64	+0.3
3,078,342	+		DDA3937_RS13510	0.64	-1.7
3,078,342	+		DDA3937_RS13510	0.64	+0.9
3,078,543	+		DDA3937_RS13510	0.82	+0.5
3,078,573	+		DDA3937_RS13510	0.85	+1.1
3,078,573	+		DDA3937_RS13510	0.85	-0.6
3,078,639	+				-0.1
3,078,639	+				+0.9
3,078,639	+				+0.1
3,078,639	+				-1.4
3,078,640	-				-1.1
3,078,640	-				+0.9
3,078,640	-				+0.3
3,078,640	-				-1.4
3,078,640	-				+0.2
3,078,640	-				-0.9
3,078,751	+				-0.4
3,078,752	-				-0.3
3,078,767	-				-0.1
3,078,781	+				-1.0
3,078,782	-				-1.4
3,078,787	+				+0.8
3,078,787	+				-1.2
3,078,787	+				-2.4
3,078,788	-				-0.8
3,078,789	+				-0.8
3,078,790	-				-1.3
3,078,790	-				-2.7
3,078,790	-				+1.0
3,078,790	-				-2.1
3,078,790	-				-1.3
3,078,798	-				-1.3
3,078,853	+				-0.4
3,078,862	+				+0.7
3,078,863	-				-0.6
3,078,869	+				-1.1
3,078,870	-				+0.1
3,078,889	+				-0.5
3,078,913	-				-2.4
3,078,924	+				-1.6
3,078,924	+				-2.9
3,078,924	+				+0.9
3,078,924	+				-0.8
3,078,924	+				-0.9
3,078,925	-				-0.5
3,078,925	-				-0.4
3,078,925	-				+0.2
3,078,925	-				-0.5
3,078,925	-				+0.4
3,078,925	-				+0.3
3,078,929	+				-0.0
3,078,930	-				+0.0
3,078,930	-				-0.6
3,078,950	-				+0.4
3,079,030	+				-2.3
3,079,030	+				-1.5
3,079,045	+		DDA3937_RS13515	0.11	-1.9
3,079,046	-		DDA3937_RS13515	0.11	-2.0
3,079,064	-		DDA3937_RS13515	0.13	-2.5
3,079,174	+		DDA3937_RS13515	0.31	-2.4
3,079,174	+		DDA3937_RS13515	0.31	-2.0
3,079,240	+		DDA3937_RS13515	0.41	-2.2
3,079,250	-		DDA3937_RS13515	0.42	-2.6
3,079,273	-		DDA3937_RS13515	0.46	-0.9
3,079,273	-		DDA3937_RS13515	0.46	-2.8
3,079,276	+		DDA3937_RS13515	0.46	-1.9
3,079,276	+		DDA3937_RS13515	0.46	-1.2
3,079,277	-		DDA3937_RS13515	0.47	-1.6
3,079,360	+		DDA3937_RS13515	0.59	-1.9
3,079,360	+		DDA3937_RS13515	0.59	-1.6
3,079,448	+		DDA3937_RS13515	0.73	-0.5
3,079,448	+		DDA3937_RS13515	0.73	-1.7
3,079,452	+		DDA3937_RS13515	0.74	-2.9
3,079,452	+		DDA3937_RS13515	0.74	-2.3
3,079,452	+		DDA3937_RS13515	0.74	-1.6
3,079,452	+		DDA3937_RS13515	0.74	-2.6
3,079,452	+		DDA3937_RS13515	0.74	-1.7
3,079,452	+		DDA3937_RS13515	0.74	-1.3
3,079,453	-		DDA3937_RS13515	0.74	-2.9
3,079,453	-		DDA3937_RS13515	0.74	-3.2
3,079,453	-		DDA3937_RS13515	0.74	-3.3
3,079,453	-		DDA3937_RS13515	0.74	-1.6
3,079,453	-		DDA3937_RS13515	0.74	-2.8
3,079,453	-		DDA3937_RS13515	0.74	-2.0
3,079,453	-		DDA3937_RS13515	0.74	-2.2
3,079,453	-		DDA3937_RS13515	0.74	-2.0
3,079,453	-		DDA3937_RS13515	0.74	-3.4
3,079,453	-		DDA3937_RS13515	0.74	-2.7
3,079,453	-		DDA3937_RS13515	0.74	-2.0
3,079,453	-		DDA3937_RS13515	0.74	-1.1
3,079,511	+		DDA3937_RS13515	0.83	-1.8
3,079,570	+				-0.9
3,079,570	+				-0.9
3,079,632	+				-1.1
3,079,632	+				-1.2
3,079,632	+				-2.8
3,079,632	+				+0.2
3,079,632	+				-2.5
3,079,632	+				-3.1
3,079,632	+				-1.2
3,079,633	-				-0.8
3,079,633	-				-1.0
3,079,633	-				-1.0
3,079,633	-				-1.1
3,079,633	-				-1.6
3,079,636	+				+0.6
3,079,636	+				-1.4
3,079,637	-				-0.9
3,079,637	-				-0.7
3,079,637	-				-2.1
3,079,637	-				-1.2
3,079,637	-				-2.0
3,079,637	-				+0.3
3,079,657	+				-0.5
3,079,696	+		DDA3937_RS13520	0.17	-0.6
3,079,704	+		DDA3937_RS13520	0.19	-1.4
3,079,704	+		DDA3937_RS13520	0.19	+0.1
3,079,704	+		DDA3937_RS13520	0.19	-1.0
3,079,704	+				-0.7
3,079,704	+				-0.7
3,079,705	-		DDA3937_RS13520	0.19	-0.1
3,079,705	-		DDA3937_RS13520	0.19	-0.4
3,079,705	-		DDA3937_RS13520	0.19	-1.7
3,079,705	-		DDA3937_RS13520	0.19	-1.3
3,079,705	-		DDA3937_RS13520	0.19	+0.8
3,079,705	-		DDA3937_RS13520	0.19	+0.1
3,079,736	-		DDA3937_RS13520	0.27	+0.4
3,079,736	-				-0.1
3,079,738	+		DDA3937_RS13520	0.27	+0.0
3,079,739	-		DDA3937_RS13520	0.28	-2.7