Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12335

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,805,002	-		DDA3937_RS12330	0.49	+0.3
2,805,032	+		DDA3937_RS12330	0.52	-0.7
2,805,082	+		DDA3937_RS12330	0.57	-1.7
2,805,527	+				-0.5
2,805,527	+				-0.1
2,805,529	+				+0.3
2,805,529	+				-0.0
2,805,530	-				+0.5
2,805,530	-				+0.8
2,805,530	-				-0.2
2,805,530	-				+0.9
2,805,530	-				-0.6
2,805,614	+				-1.5
2,805,678	+				-0.2
2,805,679	-				-3.0
2,805,679	-				+3.0
2,805,688	-				+0.1
2,805,688	-				-0.2
2,805,695	-				-2.5
2,805,712	-				-0.6
2,805,712	-				+0.3
2,805,712	-				+0.8
2,805,719	+				-0.6
2,805,719	+				-0.8
2,805,719	+				+1.4
2,805,800	+				-0.2
2,805,890	-				+0.1
2,805,890	-				-0.4
2,805,890	-				+0.0
2,805,899	+				-2.6
2,805,899	+				-0.9
2,805,900	-				+0.4
2,806,021	+		DDA3937_RS12335	0.14	+0.8
2,806,022	-		DDA3937_RS12335	0.15	+1.5
2,806,057	+		DDA3937_RS12335	0.18	+0.8
2,806,057	+		DDA3937_RS12335	0.18	-0.9
2,806,057	+		DDA3937_RS12335	0.18	+0.3
2,806,058	-		DDA3937_RS12335	0.18	-0.1
2,806,058	-		DDA3937_RS12335	0.18	+0.6
2,806,058	-		DDA3937_RS12335	0.18	+1.3
2,806,058	-		DDA3937_RS12335	0.18	-0.3
2,806,058	-		DDA3937_RS12335	0.18	+0.8
2,806,058	-		DDA3937_RS12335	0.18	-0.4
2,806,059	+		DDA3937_RS12335	0.18	-0.1
2,806,059	+		DDA3937_RS12335	0.18	-1.2
2,806,059	+		DDA3937_RS12335	0.18	+0.8
2,806,059	+		DDA3937_RS12335	0.18	+0.2
2,806,059	+		DDA3937_RS12335	0.18	-1.5
2,806,059	+		DDA3937_RS12335	0.18	+1.0
2,806,059	+		DDA3937_RS12335	0.18	+0.0
2,806,059	+		DDA3937_RS12335	0.18	+0.2
2,806,060	-		DDA3937_RS12335	0.18	+0.6
2,806,060	-		DDA3937_RS12335	0.18	-0.2
2,806,060	-		DDA3937_RS12335	0.18	+1.6
2,806,060	-		DDA3937_RS12335	0.18	-2.5
2,806,060	-		DDA3937_RS12335	0.18	+0.0
2,806,060	-		DDA3937_RS12335	0.18	+0.3
2,806,060	-		DDA3937_RS12335	0.18	-0.2
2,806,263	+		DDA3937_RS12335	0.39	-2.8
2,806,263	+		DDA3937_RS12335	0.39	+0.1
2,806,264	-		DDA3937_RS12335	0.39	-1.3
2,806,264	-		DDA3937_RS12335	0.39	-1.0
2,806,264	-		DDA3937_RS12335	0.39	+0.1
2,806,271	+		DDA3937_RS12335	0.40	+4.8
2,806,271	+				+0.8
2,806,271	+		DDA3937_RS12335	0.40	-1.5
2,806,271	+		DDA3937_RS12335	0.40	+0.8
2,806,272	-		DDA3937_RS12335	0.40	+4.0
2,806,576	+		DDA3937_RS12335	0.71	-0.2
2,806,577	-		DDA3937_RS12335	0.71	+0.0
2,806,577	-		DDA3937_RS12335	0.71	+0.3
2,806,578	+		DDA3937_RS12335	0.71	-0.5
2,806,578	+		DDA3937_RS12335	0.71	-0.8
2,806,578	+		DDA3937_RS12335	0.71	-0.8
2,806,578	+		DDA3937_RS12335	0.71	-0.3
2,806,579	-		DDA3937_RS12335	0.71	+0.1
2,806,579	-		DDA3937_RS12335	0.71	+0.1
2,806,622	+		DDA3937_RS12335	0.75	-1.0
2,806,661	-		DDA3937_RS12335	0.79	-0.5
2,806,661	-		DDA3937_RS12335	0.79	+0.5
2,806,664	+		DDA3937_RS12335	0.79	-1.4
2,806,664	+		DDA3937_RS12335	0.79	-1.2
2,806,664	+		DDA3937_RS12335	0.79	-1.2
2,806,664	+				-0.5
2,806,664	+		DDA3937_RS12335	0.79	-0.4
2,806,664	+		DDA3937_RS12335	0.79	+0.3
2,806,664	+		DDA3937_RS12335	0.79	-0.3
2,806,664	+		DDA3937_RS12335	0.79	-0.2
2,806,664	+		DDA3937_RS12335	0.79	-0.2
2,806,664	+		DDA3937_RS12335	0.79	-0.5
2,806,665	-		DDA3937_RS12335	0.79	-0.3
2,806,665	-		DDA3937_RS12335	0.79	+0.4
2,806,665	-		DDA3937_RS12335	0.79	+0.1
2,806,665	-		DDA3937_RS12335	0.79	-1.2
2,806,665	-		DDA3937_RS12335	0.79	+0.0
2,806,665	-		DDA3937_RS12335	0.79	-0.8
2,806,745	+		DDA3937_RS12335	0.88	-0.2
2,806,745	+		DDA3937_RS12335	0.88	+1.1
2,806,746	-		DDA3937_RS12335	0.88	-1.8
2,806,746	-		DDA3937_RS12335	0.88	-0.9
2,806,819	+				+0.3
2,806,819	+				-0.2
2,806,820	-				-1.3
2,806,820	-				-0.4
2,806,820	-				-0.4
2,806,849	+				-2.2
2,806,850	-				-0.9
2,806,873	-				+1.6
2,806,882	+				-0.1
2,806,882	+				+1.2
2,806,902	+				-1.8
2,806,983	+				-2.0
2,806,984	-				-1.5
2,806,984	-				+1.0
2,806,984	-				-2.1
2,807,060	+				-1.3
2,807,062	+				-0.8
2,807,062	+				-1.4
2,807,063	-				+1.2
2,807,063	-				-0.6
2,807,063	-				-0.7
2,807,063	-				+0.1
2,807,063	-				-0.8
2,807,063	-				-0.6
2,807,063	-				+0.6
2,807,126	+				-0.4
2,807,127	-				-0.2
2,807,146	+				-2.1
2,807,147	-				+0.1
2,807,147	-				-0.3
2,807,147	-				-2.4
2,807,152	+				+0.2
2,807,153	-				-0.9
2,807,204	-				-0.5
2,807,204	-				-0.7
2,807,264	-		DDA3937_RS12340	0.13	+0.5
2,807,264	-		DDA3937_RS12340	0.13	+0.4
2,807,341	+		DDA3937_RS12340	0.18	+1.0
2,807,341	+		DDA3937_RS12340	0.18	-0.4
2,807,342	-		DDA3937_RS12340	0.18	+0.2
2,807,384	+		DDA3937_RS12340	0.21	-1.3
2,807,401	+		DDA3937_RS12340	0.22	+1.7
2,807,402	-		DDA3937_RS12340	0.22	-0.8
2,807,506	+		DDA3937_RS12340	0.28	+0.5
2,807,506	+		DDA3937_RS12340	0.28	-0.4
2,807,507	-		DDA3937_RS12340	0.28	-0.4
2,807,507	-		DDA3937_RS12340	0.28	-0.8
2,807,596	+		DDA3937_RS12340	0.34	+1.0
2,807,697	-		DDA3937_RS12340	0.40	+0.1
2,807,697	-		DDA3937_RS12340	0.40	+0.4
2,807,703	-		DDA3937_RS12340	0.40	-2.5
2,807,703	-		DDA3937_RS12340	0.40	-0.4
2,807,716	+		DDA3937_RS12340	0.41	-0.8
2,807,716	+		DDA3937_RS12340	0.41	-0.6
2,807,717	-				-1.8
2,807,717	-		DDA3937_RS12340	0.41	-1.8
2,807,733	+		DDA3937_RS12340	0.42	-0.3
2,807,776	+		DDA3937_RS12340	0.45	+0.8
2,807,776	+		DDA3937_RS12340	0.45	-2.3
2,807,776	+		DDA3937_RS12340	0.45	+1.3
2,807,776	+		DDA3937_RS12340	0.45	-0.4
2,807,777	-		DDA3937_RS12340	0.45	-0.2
2,807,777	-		DDA3937_RS12340	0.45	+0.1
2,807,777	-		DDA3937_RS12340	0.45	-2.0
2,807,779	+		DDA3937_RS12340	0.45	-0.8
2,807,779	+		DDA3937_RS12340	0.45	-2.9
2,807,779	+		DDA3937_RS12340	0.45	+0.6
2,807,779	+		DDA3937_RS12340	0.45	-1.9
2,807,780	-		DDA3937_RS12340	0.45	-0.8
2,807,780	-		DDA3937_RS12340	0.45	+1.7
2,807,780	-		DDA3937_RS12340	0.45	+0.4
2,807,780	-				-0.2
2,807,780	-		DDA3937_RS12340	0.45	+0.1
2,807,780	-		DDA3937_RS12340	0.45	+0.9
2,807,780	-		DDA3937_RS12340	0.45	-0.3
2,807,780	-		DDA3937_RS12340	0.45	-1.0
2,807,780	-		DDA3937_RS12340	0.45	-0.2
2,807,782	+		DDA3937_RS12340	0.45	+1.8
2,807,782	+		DDA3937_RS12340	0.45	-1.0
2,807,782	+		DDA3937_RS12340	0.45	-1.5
2,807,782	+		DDA3937_RS12340	0.45	-2.5
2,807,783	-		DDA3937_RS12340	0.45	+0.4
2,807,783	-		DDA3937_RS12340	0.45	-0.2
2,807,783	-		DDA3937_RS12340	0.45	+0.5
2,807,783	-		DDA3937_RS12340	0.45	-1.2
2,807,783	-		DDA3937_RS12340	0.45	-1.4