Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12155

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,760,154	+		DDA3937_RS12150	0.59	-1.1
2,760,157	+		DDA3937_RS12150	0.59	+0.2
2,760,158	-		DDA3937_RS12150	0.59	-2.2
2,760,178	+		DDA3937_RS12150	0.60	-0.6
2,760,178	+		DDA3937_RS12150	0.60	-0.8
2,760,179	-		DDA3937_RS12150	0.60	-0.0
2,760,179	-		DDA3937_RS12150	0.60	-2.4
2,760,179	-		DDA3937_RS12150	0.60	-0.8
2,760,179	-		DDA3937_RS12150	0.60	-2.8
2,760,179	-		DDA3937_RS12150	0.60	-0.2
2,760,180	+		DDA3937_RS12150	0.60	-2.1
2,760,180	+		DDA3937_RS12150	0.60	+0.9
2,760,181	-		DDA3937_RS12150	0.60	+0.6
2,760,181	-		DDA3937_RS12150	0.60	-1.8
2,760,181	-		DDA3937_RS12150	0.60	-2.5
2,760,181	-		DDA3937_RS12150	0.60	+0.5
2,760,294	-		DDA3937_RS12150	0.66	+0.0
2,760,363	+		DDA3937_RS12150	0.70	-1.5
2,760,363	+		DDA3937_RS12150	0.70	+0.2
2,760,363	+		DDA3937_RS12150	0.70	-0.2
2,760,363	+		DDA3937_RS12150	0.70	+0.0
2,760,363	+		DDA3937_RS12150	0.70	-2.6
2,760,363	+		DDA3937_RS12150	0.70	-0.1
2,760,364	-		DDA3937_RS12150	0.70	+1.5
2,760,364	-		DDA3937_RS12150	0.70	-1.3
2,760,364	-		DDA3937_RS12150	0.70	+0.7
2,760,364	-		DDA3937_RS12150	0.70	+0.9
2,760,364	-		DDA3937_RS12150	0.70	-1.3
2,760,364	-		DDA3937_RS12150	0.70	-0.4
2,760,364	-		DDA3937_RS12150	0.70	-0.2
2,760,364	-		DDA3937_RS12150	0.70	-0.2
2,760,364	-		DDA3937_RS12150	0.70	-1.1
2,760,364	-		DDA3937_RS12150	0.70	+0.5
2,760,364	-		DDA3937_RS12150	0.70	-0.6
2,760,364	-		DDA3937_RS12150	0.70	-1.6
2,760,365	+		DDA3937_RS12150	0.70	+0.2
2,760,365	+		DDA3937_RS12150	0.70	-0.4
2,760,365	+		DDA3937_RS12150	0.70	-0.4
2,760,365	+		DDA3937_RS12150	0.70	-2.9
2,760,397	+		DDA3937_RS12150	0.72	-2.2
2,760,398	-		DDA3937_RS12150	0.72	-2.0
2,760,475	-		DDA3937_RS12150	0.76	-1.9
2,760,552	+		DDA3937_RS12150	0.81	+0.6
2,760,552	+		DDA3937_RS12150	0.81	+0.3
2,760,552	+		DDA3937_RS12150	0.81	-0.8
2,760,553	-		DDA3937_RS12150	0.81	+1.8
2,760,553	-		DDA3937_RS12150	0.81	+0.3
2,760,555	-		DDA3937_RS12150	0.81	-0.6
2,760,555	-		DDA3937_RS12150	0.81	-2.5
2,760,555	-		DDA3937_RS12150	0.81	+0.7
2,760,641	+		DDA3937_RS12150	0.86	-0.4
2,760,716	+		DDA3937_RS12150	0.90	-0.1
2,760,716	+		DDA3937_RS12150	0.90	-1.8
2,760,717	-		DDA3937_RS12150	0.90	-0.4
2,760,867	+				-0.2
2,760,867	+				+1.1
2,760,868	-				-0.0
2,760,868	-				-2.5
2,760,887	+				+0.5
2,760,887	+				+0.5
2,760,887	+				-0.8
2,760,887	+				-0.8
2,760,887	+				+0.1
2,760,887	+				-1.0
2,760,888	-				+0.0
2,760,888	-				+0.2
2,760,888	-				-0.6
2,760,888	-				-1.2
2,760,918	-				+0.8
2,760,924	-				+0.8
2,760,964	+				-1.3
2,760,984	-				+0.5
2,761,048	+				+0.2
2,761,048	+				+0.1
2,761,048	+				-0.0
2,761,048	+				-3.3
2,761,048	+				+0.3
2,761,048	+				-0.4
2,761,049	-				-0.9
2,761,049	-				+1.5
2,761,051	-				-0.7
2,761,051	-				+0.5
2,761,051	-				-1.5
2,761,206	-				+0.1
2,761,214	+				+1.8
2,761,228	+				+1.2
2,761,229	-				+0.8
2,761,266	+				-0.9
2,761,347	+		DDA3937_RS12155	0.12	-0.4
2,761,347	+		DDA3937_RS12155	0.12	-1.8
2,761,348	-		DDA3937_RS12155	0.12	+0.0
2,761,389	+		DDA3937_RS12155	0.14	-0.5
2,761,389	+		DDA3937_RS12155	0.14	+2.1
2,761,392	+		DDA3937_RS12155	0.14	-0.2
2,761,393	-		DDA3937_RS12155	0.14	+0.5
2,761,537	+		DDA3937_RS12155	0.23	+0.1
2,761,660	+		DDA3937_RS12155	0.30	+1.2
2,761,660	+		DDA3937_RS12155	0.30	+0.9
2,761,718	-		DDA3937_RS12155	0.34	-0.8
2,761,718	-		DDA3937_RS12155	0.34	-1.8
2,761,723	+		DDA3937_RS12155	0.34	+0.9
2,761,723	+		DDA3937_RS12155	0.34	-0.8
2,761,724	-		DDA3937_RS12155	0.34	+0.0
2,761,728	+		DDA3937_RS12155	0.34	-0.4
2,761,728	+		DDA3937_RS12155	0.34	-0.5
2,761,728	+		DDA3937_RS12155	0.34	-0.5
2,761,729	-		DDA3937_RS12155	0.34	-1.5
2,761,729	-		DDA3937_RS12155	0.34	-0.6
2,761,729	-		DDA3937_RS12155	0.34	-1.0
2,761,729	-				+0.8
2,761,729	-		DDA3937_RS12155	0.34	-0.1
2,761,729	-		DDA3937_RS12155	0.34	-1.5
2,761,729	-		DDA3937_RS12155	0.34	-1.9
2,761,731	+		DDA3937_RS12155	0.34	+0.1
2,761,732	-		DDA3937_RS12155	0.34	-0.2
2,761,751	+		DDA3937_RS12155	0.35	+0.8
2,761,789	+		DDA3937_RS12155	0.38	-0.1
2,761,789	+		DDA3937_RS12155	0.38	-0.1
2,761,789	+		DDA3937_RS12155	0.38	-0.5
2,761,789	+		DDA3937_RS12155	0.38	-2.2
2,761,789	+		DDA3937_RS12155	0.38	-1.2
2,761,789	+		DDA3937_RS12155	0.38	+1.0
2,761,789	+		DDA3937_RS12155	0.38	+0.3
2,761,789	+		DDA3937_RS12155	0.38	+1.4
2,761,789	+		DDA3937_RS12155	0.38	-0.3
2,761,789	+		DDA3937_RS12155	0.38	+0.4
2,761,790	-		DDA3937_RS12155	0.38	-2.2
2,761,790	-		DDA3937_RS12155	0.38	+0.2
2,761,790	-		DDA3937_RS12155	0.38	+2.1
2,761,790	-				+1.1
2,761,790	-		DDA3937_RS12155	0.38	-0.2
2,761,790	-		DDA3937_RS12155	0.38	-0.5
2,761,790	-		DDA3937_RS12155	0.38	-0.8
2,761,790	-		DDA3937_RS12155	0.38	+0.4
2,761,791	+		DDA3937_RS12155	0.38	-0.8
2,761,791	+		DDA3937_RS12155	0.38	-2.2
2,761,791	+		DDA3937_RS12155	0.38	-0.8
2,761,791	+		DDA3937_RS12155	0.38	-1.5
2,761,791	+		DDA3937_RS12155	0.38	-0.9
2,761,792	-		DDA3937_RS12155	0.38	-0.5
2,761,792	-		DDA3937_RS12155	0.38	-0.5
2,761,792	-		DDA3937_RS12155	0.38	-0.5
2,761,792	-		DDA3937_RS12155	0.38	-0.6
2,761,845	+		DDA3937_RS12155	0.41	-2.0
2,761,845	+		DDA3937_RS12155	0.41	-1.5
2,761,846	-		DDA3937_RS12155	0.41	+1.5
2,761,878	+		DDA3937_RS12155	0.43	-0.9
2,761,879	-		DDA3937_RS12155	0.43	+0.2
2,762,100	-		DDA3937_RS12155	0.56	-1.0
2,762,100	-		DDA3937_RS12155	0.56	+0.0
2,762,158	-		DDA3937_RS12155	0.60	-2.0
2,762,806	+				+1.5
2,762,807	-				+0.4
2,762,807	-				+1.2
2,762,848	+				+1.0
2,762,848	+				-0.4
2,762,848	+				+3.2
2,762,849	-				-1.4
2,762,849	-				-0.1
2,762,849	-				-0.6
2,762,984	+				+1.6
2,762,985	-				+0.6
2,762,985	-				+0.2
2,763,016	+		DDA3937_RS23520	0.33	-0.6
2,763,017	-		DDA3937_RS23520	0.33	+0.6
2,763,017	-		DDA3937_RS23520	0.33	-1.4
2,763,089	-		DDA3937_RS23520	0.88	-0.6
2,763,127	-				+1.2
2,763,127	-				+0.6
2,763,146	-				-0.3
2,763,197	+				-0.6
2,763,198	-				-1.2
2,763,198	-				-0.2
2,763,198	-				+0.2
2,763,205	-				+0.3
2,763,205	-				-0.0
2,763,205	-				-0.6
2,763,206	+				-2.4
2,763,206	+				+0.4
2,763,207	-				+0.0
2,763,207	-				+0.8
2,763,207	-				-1.1
2,763,219	+				+0.8
2,763,220	-				-0.5
2,763,221	+				-2.4
2,763,221	+				+0.4
2,763,221	+				-0.8
2,763,222	-				-0.2
2,763,222	-				+1.3
2,763,250	+				-1.2
2,763,250	+				-0.1
2,763,257	+				+0.8
2,763,258	-				-0.8
2,763,258	-				-0.1
2,763,258	-				-0.9
2,763,261	+				-0.8
2,763,261	+				-0.6
2,763,262	-				-0.5
2,763,277	+				+0.8
2,763,277	+				+0.2
2,763,277	+				-0.6
2,763,277	+				-1.0
2,763,278	-				-0.4
2,763,278	-				+0.5
2,763,278	-				+0.2
2,763,278	-				-0.5
2,763,281	+				-0.5
2,763,281	+				+0.2
2,763,281	+				+0.5
2,763,282	-				-0.4
2,763,282	-				-1.5
2,763,343	-				+1.0
2,763,343	-				+1.1
2,763,347	+				+0.1
2,763,347	+				+0.5
2,763,348	-				+0.1
2,763,348	-				-0.9
2,763,348	-				-1.0
2,763,351	+				+0.0
2,763,352	-				+1.5
2,763,359	-				+1.8
2,763,466	-				-0.2
2,763,477	+				-2.2
2,763,573	-				-1.2
2,763,609	+				-0.7
2,763,609	+				+0.0
2,763,610	-				-1.0
2,763,610	-				-0.9
2,763,610	-				+0.8
2,763,610	-				-0.1
2,763,611	+				-1.2
2,763,611	+				-0.4
2,763,612	-				+0.7
2,763,612	-				-0.2
2,763,612	-				+0.3
2,763,612	-				-1.4
2,763,614	-				+1.3
2,763,674	+				-2.4
2,763,705	+				-0.5
2,763,784	+				-1.6
2,763,785	-				+0.2
2,763,822	+				-0.8
2,763,822	+				-0.3
2,763,823	-				-0.4
2,763,823	-				-0.4