Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11940

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,712,524	+		DDA3937_RS11935	0.25	+0.1
2,712,531	+		DDA3937_RS11935	0.26	+1.6
2,712,531	+		DDA3937_RS11935	0.26	+0.3
2,712,531	+		DDA3937_RS11935	0.26	+0.9
2,712,532	-		DDA3937_RS11935	0.26	-0.2
2,712,570	-		DDA3937_RS11935	0.30	-1.3
2,712,599	+		DDA3937_RS11935	0.33	-0.1
2,712,615	+		DDA3937_RS11935	0.34	-0.3
2,712,615	+		DDA3937_RS11935	0.34	-1.4
2,712,615	+		DDA3937_RS11935	0.34	-0.5
2,712,615	+		DDA3937_RS11935	0.34	-0.5
2,712,615	+		DDA3937_RS11935	0.34	-2.8
2,712,615	+		DDA3937_RS11935	0.34	+0.2
2,712,615	+		DDA3937_RS11935	0.34	-0.3
2,712,615	+		DDA3937_RS11935	0.34	-1.2
2,712,615	+		DDA3937_RS11935	0.34	-0.8
2,712,616	-		DDA3937_RS11935	0.34	+0.4
2,712,616	-		DDA3937_RS11935	0.34	-0.1
2,712,616	-		DDA3937_RS11935	0.34	+0.3
2,712,616	-		DDA3937_RS11935	0.34	-0.2
2,712,616	-		DDA3937_RS11935	0.34	-0.2
2,712,720	+		DDA3937_RS11935	0.44	+1.8
2,712,721	-		DDA3937_RS11935	0.45	-1.2
2,712,723	-		DDA3937_RS11935	0.45	-1.8
2,712,895	-		DDA3937_RS11935	0.62	-2.5
2,712,895	-		DDA3937_RS11935	0.62	-2.0
2,712,900	+		DDA3937_RS11935	0.62	+0.2
2,712,900	+		DDA3937_RS11935	0.62	-1.1
2,712,917	+		DDA3937_RS11935	0.64	-1.8
2,712,918	-		DDA3937_RS11935	0.64	+1.1
2,712,936	+		DDA3937_RS11935	0.66	-2.9
2,712,937	-		DDA3937_RS11935	0.66	+0.2
2,712,937	-		DDA3937_RS11935	0.66	-1.3
2,712,937	-		DDA3937_RS11935	0.66	-0.6
2,713,027	+		DDA3937_RS11935	0.75	-0.1
2,713,028	-		DDA3937_RS11935	0.75	-1.9
2,713,028	-		DDA3937_RS11935	0.75	+0.5
2,713,035	+		DDA3937_RS11935	0.75	+0.1
2,713,035	+		DDA3937_RS11935	0.75	-0.4
2,713,035	+		DDA3937_RS11935	0.75	-2.3
2,713,035	+		DDA3937_RS11935	0.75	+0.0
2,713,035	+		DDA3937_RS11935	0.75	-3.3
2,713,035	+		DDA3937_RS11935	0.75	+0.3
2,713,035	+		DDA3937_RS11935	0.75	-0.1
2,713,035	+		DDA3937_RS11935	0.75	-0.2
2,713,035	+		DDA3937_RS11935	0.75	-0.8
2,713,035	+		DDA3937_RS11935	0.75	+1.6
2,713,035	+		DDA3937_RS11935	0.75	-0.5
2,713,035	+		DDA3937_RS11935	0.75	-0.4
2,713,035	+		DDA3937_RS11935	0.75	+0.8
2,713,035	+		DDA3937_RS11935	0.75	-0.2
2,713,036	-		DDA3937_RS11935	0.75	-1.1
2,713,036	-		DDA3937_RS11935	0.75	+0.4
2,713,036	-		DDA3937_RS11935	0.75	+0.2
2,713,036	-		DDA3937_RS11935	0.75	-3.1
2,713,036	-		DDA3937_RS11935	0.75	+0.5
2,713,036	-		DDA3937_RS11935	0.75	-0.3
2,713,036	-		DDA3937_RS11935	0.75	+0.0
2,713,285	-				-3.2
2,713,293	+				+1.6
2,713,294	-				-0.1
2,713,362	+				+1.4
2,713,362	+				-0.0
2,713,362	+				-0.3
2,713,362	+				+0.2
2,713,362	+				-0.3
2,713,362	+				+1.1
2,713,362	+				+0.2
2,713,363	-				-0.1
2,713,363	-				-2.3
2,713,363	-				+0.4
2,713,363	-				-0.8
2,713,433	+				-1.0
2,713,433	+				+0.1
2,713,433	+				-1.2
2,713,433	+				+1.6
2,713,434	-				-0.3
2,713,434	-				-1.4
2,713,434	-				+0.4
2,713,711	-		DDA3937_RS11940	0.24	-0.4
2,713,892	+		DDA3937_RS11940	0.37	-0.8
2,713,893	-		DDA3937_RS11940	0.37	+0.2
2,713,982	+		DDA3937_RS11940	0.43	-0.7
2,713,982	+		DDA3937_RS11940	0.43	+0.8
2,713,982	+		DDA3937_RS11940	0.43	-0.8
2,713,983	-		DDA3937_RS11940	0.43	-0.3
2,713,983	-		DDA3937_RS11940	0.43	+1.4
2,713,983	-		DDA3937_RS11940	0.43	-0.2
2,713,983	-		DDA3937_RS11940	0.43	+1.8
2,713,983	-		DDA3937_RS11940	0.43	+0.8
2,713,983	-		DDA3937_RS11940	0.43	+6.1
2,713,983	-		DDA3937_RS11940	0.43	-3.3
2,713,983	-		DDA3937_RS11940	0.43	-0.5
2,713,983	-		DDA3937_RS11940	0.43	-1.0
2,713,983	-		DDA3937_RS11940	0.43	-0.6
2,713,983	-		DDA3937_RS11940	0.43	+0.1
2,713,987	+		DDA3937_RS11940	0.44	-0.8
2,713,988	-		DDA3937_RS11940	0.44	+0.8
2,714,016	+		DDA3937_RS11940	0.46	+1.8
2,714,016	+				+0.2
2,714,017	-		DDA3937_RS11940	0.46	-0.0
2,714,098	-		DDA3937_RS11940	0.52	-0.7
2,714,098	-		DDA3937_RS11940	0.52	-0.1
2,714,098	-		DDA3937_RS11940	0.52	-0.8
2,714,307	+		DDA3937_RS11940	0.67	+0.8
2,714,308	-		DDA3937_RS11940	0.67	-1.2
2,714,311	-		DDA3937_RS11940	0.67	-0.9
2,714,362	-				-0.2
2,714,371	+		DDA3937_RS11940	0.71	+2.4
2,714,371	+		DDA3937_RS11940	0.71	+0.4
2,714,371	+		DDA3937_RS11940	0.71	+0.0
2,714,372	-		DDA3937_RS11940	0.71	+0.6
2,714,372	-		DDA3937_RS11940	0.71	+0.6
2,714,372	-		DDA3937_RS11940	0.71	-1.1
2,714,372	-		DDA3937_RS11940	0.71	-1.4
2,714,378	+		DDA3937_RS11940	0.72	+0.1
2,714,378	+		DDA3937_RS11940	0.72	-0.7
2,714,443	-		DDA3937_RS11940	0.77	+1.7
2,714,482	-		DDA3937_RS11940	0.79	-0.2
2,714,484	+		DDA3937_RS11940	0.79	-1.5
2,714,527	+		DDA3937_RS11940	0.83	-0.0
2,714,541	+		DDA3937_RS11940	0.84	-1.0
2,714,541	+		DDA3937_RS11940	0.84	-0.6
2,714,751	+				-0.8
2,714,770	-				-0.3
2,714,770	-				-0.5
2,714,792	+				-0.9
2,714,792	+				-0.3
2,714,792	+				-1.2
2,714,792	+				-1.5
2,714,793	-				-2.5
2,714,793	-				+0.4
2,714,799	-				+0.1
2,714,799	-				+1.4
2,714,799	-				-0.1
2,714,804	+				+0.0
2,714,815	+				-0.9
2,714,816	+				+1.2
2,714,816	+				-1.5
2,714,816	+				-0.1
2,714,817	-				+0.1
2,714,823	+				+1.6
2,714,823	+				-1.2
2,714,845	+				-0.2
2,714,846	-				-2.3
2,714,846	-				-0.1
2,714,846	-				+2.4
2,714,846	-				-0.9
2,714,922	+				-0.7
2,714,944	+				+1.1
2,714,944	+				-0.1
2,714,946	+				+1.5
2,714,946	+				+0.1
2,714,947	-				-1.5
2,714,968	-				+0.8
2,714,968	-				-0.4
2,714,974	+				-0.1
2,714,974	+				-0.1
2,714,974	+				+0.0
2,714,974	+				+1.4
2,714,974	+				+0.2
2,714,974	+				-2.3
2,714,974	+				+0.4
2,714,975	-				-2.4
2,714,975	-				+0.3
2,714,975	-				-0.2
2,714,975	-				+0.2
2,714,975	-				-0.2
2,715,001	+				-0.3
2,715,002	-				+1.8
2,715,010	-				-0.2
2,715,010	-				-1.5
2,715,108	+				+1.8
2,715,120	+				+1.1
2,715,120	+				-0.2
2,715,121	-				+0.1
2,715,121	-				+0.1
2,715,121	-				+1.1
2,715,121	-				-0.8
2,715,121	-				+0.2
2,715,121	-				-2.2
2,715,138	-				-0.2
2,715,140	-				-0.6
2,715,351	+				-2.0
2,715,361	+				+0.2
2,715,406	+		DDA3937_RS11945	0.12	+0.8
2,715,473	+		DDA3937_RS11945	0.16	+0.8
2,715,473	+		DDA3937_RS11945	0.16	-0.8
2,715,519	+		DDA3937_RS11945	0.18	-0.4
2,715,519	+		DDA3937_RS11945	0.18	-0.0
2,715,520	-		DDA3937_RS11945	0.18	-1.0
2,715,520	-		DDA3937_RS11945	0.18	+1.4
2,715,667	-		DDA3937_RS11945	0.26	-0.8
2,715,687	-		DDA3937_RS11945	0.27	-1.3
2,715,739	-		DDA3937_RS11945	0.30	-1.8