Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10835

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,439,617	+		DDA3937_RS10830	0.56	+1.1
2,439,617	+		DDA3937_RS10830	0.56	-1.0
2,439,618	-		DDA3937_RS10830	0.56	-1.0
2,439,646	+		DDA3937_RS10830	0.58	-1.6
2,439,661	+		DDA3937_RS10830	0.59	-2.2
2,439,662	-		DDA3937_RS10830	0.59	+1.4
2,439,698	+		DDA3937_RS10830	0.62	-0.2
2,439,698	+		DDA3937_RS10830	0.62	-1.2
2,439,698	+		DDA3937_RS10830	0.62	+2.6
2,439,698	+		DDA3937_RS10830	0.62	+0.2
2,439,699	-		DDA3937_RS10830	0.62	-0.3
2,439,746	+				-0.8
2,439,748	+		DDA3937_RS10830	0.65	-1.7
2,439,748	+		DDA3937_RS10830	0.65	-0.2
2,439,837	+		DDA3937_RS10830	0.72	+0.2
2,439,842	+		DDA3937_RS10830	0.72	-1.0
2,439,842	+		DDA3937_RS10830	0.72	+2.2
2,439,842	+		DDA3937_RS10830	0.72	+0.8
2,439,842	+		DDA3937_RS10830	0.72	-1.0
2,439,842	+		DDA3937_RS10830	0.72	-1.5
2,439,842	+		DDA3937_RS10830	0.72	-1.8
2,439,842	+		DDA3937_RS10830	0.72	+0.4
2,439,843	-		DDA3937_RS10830	0.72	-0.3
2,439,843	-		DDA3937_RS10830	0.72	-1.2
2,439,843	-		DDA3937_RS10830	0.72	-1.5
2,439,843	-		DDA3937_RS10830	0.72	-0.8
2,439,843	-		DDA3937_RS10830	0.72	-0.5
2,439,843	-		DDA3937_RS10830	0.72	+1.4
2,439,844	+		DDA3937_RS10830	0.72	-0.2
2,439,844	+		DDA3937_RS10830	0.72	-1.2
2,439,882	-		DDA3937_RS10830	0.75	-0.2
2,439,882	-		DDA3937_RS10830	0.75	-0.1
2,439,882	-		DDA3937_RS10830	0.75	+0.0
2,439,960	-		DDA3937_RS10830	0.80	-0.3
2,439,984	-		DDA3937_RS10830	0.82	+0.3
2,440,070	+		DDA3937_RS10830	0.88	-0.7
2,440,070	+		DDA3937_RS10830	0.88	+0.2
2,440,070	+		DDA3937_RS10830	0.88	-2.2
2,440,071	-				+0.8
2,440,073	+				+1.6
2,440,074	-		DDA3937_RS10830	0.88	-0.3
2,440,112	+				+4.2
2,440,112	+				-1.8
2,440,112	+				+0.8
2,440,112	+				-0.6
2,440,112	+				-2.6
2,440,112	+				-0.2
2,440,113	-				+0.2
2,440,113	-				+0.8
2,440,113	-				-0.2
2,440,113	-				+0.5
2,440,113	-				+1.8
2,440,113	-				+0.8
2,440,114	+				-0.3
2,440,157	-				-0.3
2,440,171	+				-2.3
2,440,172	-				+1.9
2,440,192	+				-0.8
2,440,234	+				+0.6
2,440,236	+				-0.4
2,440,236	+				-1.3
2,440,237	-				-0.6
2,440,237	-				-0.3
2,440,237	-				+1.1
2,440,237	-				-1.5
2,440,237	-				+1.0
2,440,244	+				+0.0
2,440,271	+				-1.6
2,440,271	+				-1.4
2,440,280	-				+0.6
2,440,282	+				-1.0
2,440,282	+				+0.3
2,440,283	-				-0.1
2,440,298	+				-1.2
2,440,298	+				+1.1
2,440,299	-				+2.8
2,440,299	-				-1.6
2,440,299	-				+0.0
2,440,331	-				-0.8
2,440,347	-				-1.2
2,440,347	-				-1.2
2,440,376	-				+0.2
2,440,435	+				+0.6
2,440,449	+				-0.2
2,440,485	+				-0.8
2,440,488	+				+1.5
2,440,588	-				+0.4
2,440,591	+				-0.1
2,440,592	-				+0.7
2,440,646	+				-1.2
2,440,646	+				+2.4
2,440,690	-				-0.8
2,440,690	-				-0.2
2,440,690	-				-0.0
2,440,690	-				-2.3
2,440,740	+		DDA3937_RS10835	0.15	+0.1
2,440,809	+		DDA3937_RS10835	0.23	-0.2
2,440,810	-		DDA3937_RS10835	0.23	+1.3
2,440,810	-		DDA3937_RS10835	0.23	-0.9
2,440,810	-				+0.8
2,440,811	+		DDA3937_RS10835	0.24	+0.1
2,440,811	+		DDA3937_RS10835	0.24	-0.7
2,440,811	+		DDA3937_RS10835	0.24	-1.8
2,440,811	+		DDA3937_RS10835	0.24	-2.0
2,440,811	+		DDA3937_RS10835	0.24	+1.2
2,440,811	+		DDA3937_RS10835	0.24	-1.2
2,440,812	-		DDA3937_RS10835	0.24	+0.2
2,440,812	-		DDA3937_RS10835	0.24	+7.4
2,440,812	-		DDA3937_RS10835	0.24	-0.6
2,440,812	-		DDA3937_RS10835	0.24	+1.7
2,440,812	-		DDA3937_RS10835	0.24	+1.4
2,440,852	-		DDA3937_RS10835	0.28	+1.7
2,440,869	-		DDA3937_RS10835	0.30	+1.3
2,440,869	-		DDA3937_RS10835	0.30	+0.8
2,440,892	+		DDA3937_RS10835	0.33	-0.5
2,441,036	+		DDA3937_RS10835	0.50	-0.9
2,441,036	+		DDA3937_RS10835	0.50	+0.2
2,441,049	-		DDA3937_RS10835	0.51	-0.8
2,441,163	+		DDA3937_RS10835	0.65	+1.6
2,441,165	+		DDA3937_RS10835	0.65	-0.2
2,441,165	+		DDA3937_RS10835	0.65	+1.1
2,441,166	-		DDA3937_RS10835	0.65	+1.2
2,441,206	+		DDA3937_RS10835	0.70	+0.2
2,441,309	+		DDA3937_RS10835	0.82	-0.0
2,441,309	+		DDA3937_RS10835	0.82	-0.9
2,441,309	+		DDA3937_RS10835	0.82	+0.6
2,441,310	-		DDA3937_RS10835	0.82	-0.9
2,441,310	-		DDA3937_RS10835	0.82	-0.9
2,441,310	-		DDA3937_RS10835	0.82	-1.3
2,441,310	-		DDA3937_RS10835	0.82	-0.8
2,441,435	-				-1.3
2,441,435	-				+0.1
2,441,455	-				-1.5
2,441,471	+				+0.1
2,441,471	+				-0.2
2,441,471	+				+1.5
2,441,471	+				-1.0
2,441,472	-				-1.2
2,441,495	-				-1.2
2,441,495	-				-0.7
2,441,557	+				+2.2
2,441,558	-				-2.4
2,441,558	-				-1.3
2,441,558	-				+0.5
2,441,663	-				-0.1
2,441,682	-				-1.0
2,441,722	+				+0.1
2,441,722	+				+0.8
2,441,723	-				+0.1
2,441,723	-				+0.2
2,441,760	+				-0.8
2,441,760	+				+0.2
2,441,760	+				-1.3
2,441,761	-				-0.5
2,441,761	-				+2.4
2,441,769	+				+0.2
2,441,769	+				-2.2
2,441,769	+				-0.6
2,441,770	-				-0.6
2,441,785	-				-0.1
2,441,788	+				+0.3
2,441,789	-				-1.0
2,441,813	-				-3.4
2,441,815	-				-0.2
2,441,825	-				-0.6
2,441,825	-				+1.0
2,441,825	-				-0.8
2,441,892	+				-1.8
2,441,893	-				-0.0
2,441,948	+				-0.2
2,441,949	-				-2.8
2,441,967	+				-0.0
2,441,967	+				-0.9
2,442,060	-		DDA3937_RS10840	0.14	-1.2
2,442,060	-		DDA3937_RS10840	0.14	-0.3
2,442,081	+		DDA3937_RS10840	0.16	-0.0
2,442,081	+		DDA3937_RS10840	0.16	+0.1
2,442,082	-		DDA3937_RS10840	0.16	-0.4
2,442,082	-		DDA3937_RS10840	0.16	-1.3
2,442,143	+		DDA3937_RS10840	0.20	+0.4
2,442,143	+		DDA3937_RS10840	0.20	-0.6
2,442,144	-		DDA3937_RS10840	0.20	-1.6
2,442,216	+		DDA3937_RS10840	0.26	+0.8
2,442,217	-		DDA3937_RS10840	0.26	+1.5
2,442,260	+		DDA3937_RS10840	0.29	-0.2
2,442,260	+		DDA3937_RS10840	0.29	+0.8
2,442,260	+		DDA3937_RS10840	0.29	-1.6
2,442,260	+		DDA3937_RS10840	0.29	-1.5
2,442,261	-		DDA3937_RS10840	0.29	-0.8
2,442,261	-		DDA3937_RS10840	0.29	-0.1
2,442,261	-		DDA3937_RS10840	0.29	-0.0
2,442,274	+		DDA3937_RS10840	0.30	-1.2