Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10705

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,408,228	+				-1.2
2,408,262	+				-0.9
2,408,262	+				+1.2
2,408,262	+				-2.5
2,408,263	-				-1.1
2,408,263	-				-1.2
2,408,263	-				+0.5
2,408,263	-				-0.1
2,408,264	+				-0.1
2,408,264	+				+0.0
2,408,264	+				+0.8
2,408,264	+				+0.5
2,408,265	-				+0.6
2,408,265	-				+0.0
2,408,265	-				+0.1
2,408,265	-				-2.1
2,408,279	+				+0.7
2,408,300	+				-0.2
2,408,318	+				+0.8
2,408,319	-				+0.7
2,408,328	-				-0.0
2,408,403	-				-0.2
2,408,468	-		DDA3937_RS10700	0.17	+0.6
2,408,522	-		DDA3937_RS10700	0.24	+0.7
2,408,573	-		DDA3937_RS10700	0.30	+2.1
2,408,668	+		DDA3937_RS10700	0.43	+0.9
2,408,669	-		DDA3937_RS10700	0.43	+0.2
2,408,816	+		DDA3937_RS10700	0.62	+0.8
2,408,817	-		DDA3937_RS10700	0.62	+2.4
2,408,830	-		DDA3937_RS10700	0.64	-1.2
2,408,830	-		DDA3937_RS10700	0.64	+0.7
2,408,856	+		DDA3937_RS10700	0.67	-1.5
2,408,856	+		DDA3937_RS10700	0.67	+0.4
2,408,856	+		DDA3937_RS10700	0.67	-1.0
2,408,857	-		DDA3937_RS10700	0.67	-1.6
2,408,857	-		DDA3937_RS10700	0.67	-0.6
2,408,857	-		DDA3937_RS10700	0.67	-1.4
2,408,857	-		DDA3937_RS10700	0.67	+1.6
2,408,860	+		DDA3937_RS10700	0.68	-0.1
2,408,860	+		DDA3937_RS10700	0.68	-0.8
2,408,860	+		DDA3937_RS10700	0.68	-0.3
2,408,861	-		DDA3937_RS10700	0.68	-0.8
2,408,861	-		DDA3937_RS10700	0.68	-1.6
2,408,861	-		DDA3937_RS10700	0.68	+1.0
2,408,861	-		DDA3937_RS10700	0.68	-3.1
2,408,864	+		DDA3937_RS10700	0.68	+0.5
2,408,864	+		DDA3937_RS10700	0.68	-0.5
2,408,864	+		DDA3937_RS10700	0.68	+1.1
2,408,864	+		DDA3937_RS10700	0.68	+1.1
2,408,864	+		DDA3937_RS10700	0.68	-0.1
2,408,865	-		DDA3937_RS10700	0.68	-2.2
2,408,865	-		DDA3937_RS10700	0.68	-0.7
2,408,866	+		DDA3937_RS10700	0.68	-0.7
2,408,866	+		DDA3937_RS10700	0.68	+0.9
2,408,866	+		DDA3937_RS10700	0.68	-0.1
2,409,036	+				-1.8
2,409,044	+				-0.3
2,409,044	+				-0.6
2,409,045	-				+1.3
2,409,088	+				-1.8
2,409,089	-				-1.3
2,409,107	+				-1.5
2,409,108	-				+0.5
2,409,132	+				-0.6
2,409,164	+				-1.8
2,409,164	+				-0.8
2,409,165	-				-1.3
2,409,165	-				+1.1
2,409,165	-				+1.1
2,409,184	+				-0.4
2,409,185	-				-0.1
2,409,201	-				-1.8
2,409,249	-				+4.0
2,409,268	+		DDA3937_RS10705	0.10	-0.9
2,409,268	+		DDA3937_RS10705	0.10	-0.8
2,409,309	+				-0.2
2,409,309	+				-1.2
2,409,310	-		DDA3937_RS10705	0.14	-0.7
2,409,310	-		DDA3937_RS10705	0.14	-0.8
2,409,383	+		DDA3937_RS10705	0.20	-1.5
2,409,400	+		DDA3937_RS10705	0.21	-0.4
2,409,404	-		DDA3937_RS10705	0.21	-0.2
2,409,440	+		DDA3937_RS10705	0.24	-0.7
2,409,441	-		DDA3937_RS10705	0.24	-0.1
2,409,441	-		DDA3937_RS10705	0.24	-1.0
2,409,471	+		DDA3937_RS10705	0.27	-0.2
2,409,553	+		DDA3937_RS10705	0.34	-1.2
2,409,553	+		DDA3937_RS10705	0.34	+0.5
2,409,553	+		DDA3937_RS10705	0.34	-1.0
2,409,553	+		DDA3937_RS10705	0.34	-0.8
2,409,554	-		DDA3937_RS10705	0.34	+3.3
2,409,554	-		DDA3937_RS10705	0.34	-1.6
2,409,554	-		DDA3937_RS10705	0.34	+1.5
2,409,554	-		DDA3937_RS10705	0.34	-0.9
2,409,554	-		DDA3937_RS10705	0.34	+0.2
2,409,554	-		DDA3937_RS10705	0.34	+0.2
2,409,554	-		DDA3937_RS10705	0.34	-0.2
2,409,554	-		DDA3937_RS10705	0.34	-2.0
2,409,581	+		DDA3937_RS10705	0.36	+0.5
2,409,581	+		DDA3937_RS10705	0.36	-1.3
2,409,655	-		DDA3937_RS10705	0.42	+1.6
2,409,660	-		DDA3937_RS10705	0.42	+0.8
2,409,666	+		DDA3937_RS10705	0.43	+1.0
2,409,666	+		DDA3937_RS10705	0.43	+0.4
2,409,667	-		DDA3937_RS10705	0.43	-1.2
2,409,719	+		DDA3937_RS10705	0.47	-2.7
2,409,719	+		DDA3937_RS10705	0.47	+0.8
2,409,720	-		DDA3937_RS10705	0.47	-1.0
2,409,720	-		DDA3937_RS10705	0.47	-0.6
2,409,720	-		DDA3937_RS10705	0.47	-0.2
2,409,720	-		DDA3937_RS10705	0.47	-0.6
2,409,721	+		DDA3937_RS10705	0.47	+0.1
2,409,721	+		DDA3937_RS10705	0.47	-0.3
2,409,721	+		DDA3937_RS10705	0.47	-0.2
2,409,721	+				+0.4
2,409,722	-		DDA3937_RS10705	0.47	+1.8
2,409,722	-		DDA3937_RS10705	0.47	+0.9
2,409,722	-		DDA3937_RS10705	0.47	+0.4
2,409,722	-		DDA3937_RS10705	0.47	-2.0
2,409,722	-		DDA3937_RS10705	0.47	+0.4
2,409,730	+		DDA3937_RS10705	0.48	-1.1
2,409,731	-		DDA3937_RS10705	0.48	-2.0
2,409,740	+		DDA3937_RS10705	0.49	-0.8
2,409,784	-		DDA3937_RS10705	0.52	-0.5
2,409,830	-		DDA3937_RS10705	0.56	+2.1
2,409,833	-		DDA3937_RS10705	0.56	+0.1
2,409,833	-		DDA3937_RS10705	0.56	-0.2
2,409,839	+		DDA3937_RS10705	0.57	+0.3
2,409,840	-		DDA3937_RS10705	0.57	+0.1
2,409,851	-		DDA3937_RS10705	0.58	-1.1
2,409,859	+		DDA3937_RS10705	0.59	-0.4
2,409,860	-		DDA3937_RS10705	0.59	+0.6
2,409,938	+		DDA3937_RS10705	0.65	+0.3
2,409,938	+		DDA3937_RS10705	0.65	-2.0
2,409,965	+		DDA3937_RS10705	0.67	+0.1
2,409,965	+		DDA3937_RS10705	0.67	-0.2
2,409,966	-		DDA3937_RS10705	0.67	+1.1
2,409,968	-		DDA3937_RS10705	0.67	-0.5
2,410,122	+		DDA3937_RS10705	0.80	+4.6
2,410,123	-		DDA3937_RS10705	0.80	-0.2
2,410,123	-		DDA3937_RS10705	0.80	-1.1
2,410,174	+		DDA3937_RS10705	0.84	+0.9
2,410,174	+		DDA3937_RS10705	0.84	+0.2
2,410,291	+				-1.1
2,410,292	-				-1.1
2,410,325	+				-0.5
2,410,344	-				-1.8
2,410,344	-				+0.2
2,410,422	+				-1.4
2,410,423	-				+0.2
2,410,423	-				-0.9
2,410,428	-				-0.3
2,410,470	+		DDA3937_RS10710	0.10	-0.8
2,410,539	+		DDA3937_RS10710	0.18	-1.8
2,410,540	-		DDA3937_RS10710	0.19	+0.1
2,410,564	+		DDA3937_RS10710	0.21	+0.5
2,410,565	-		DDA3937_RS10710	0.22	+0.0
2,410,565	-		DDA3937_RS10710	0.22	+0.8
2,410,624	+		DDA3937_RS10710	0.29	+0.0
2,410,625	-		DDA3937_RS10710	0.29	+0.9
2,410,625	-		DDA3937_RS10710	0.29	-3.1
2,410,929	+		DDA3937_RS10710	0.65	+1.4
2,410,930	-		DDA3937_RS10710	0.65	-0.8
2,410,933	+		DDA3937_RS10710	0.66	-1.3
2,410,933	+		DDA3937_RS10710	0.66	-1.0
2,410,934	-		DDA3937_RS10710	0.66	-1.5
2,410,938	+		DDA3937_RS10710	0.66	+0.2
2,410,938	+		DDA3937_RS10710	0.66	+0.8
2,410,938	+		DDA3937_RS10710	0.66	-0.2
2,410,938	+		DDA3937_RS10710	0.66	+1.1
2,410,939	-		DDA3937_RS10710	0.66	-2.5
2,410,939	-		DDA3937_RS10710	0.66	-0.3
2,410,939	-		DDA3937_RS10710	0.66	-0.1
2,410,993	+		DDA3937_RS10710	0.73	+0.8
2,410,994	-		DDA3937_RS10710	0.73	-1.7
2,410,994	-		DDA3937_RS10710	0.73	-0.3
2,410,994	-		DDA3937_RS10710	0.73	+2.6
2,410,994	-		DDA3937_RS10710	0.73	+0.8
2,411,056	+		DDA3937_RS10710	0.80	-1.6
2,411,057	-		DDA3937_RS10710	0.81	-0.0
2,411,228	+				+0.8
2,411,229	-				-0.7
2,411,229	-				-0.6
2,411,230	+				+0.8
2,411,231	-				+0.4
2,411,348	+				-2.4
2,411,349	-				-0.8
2,411,349	-				-0.7