Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10360

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,332,464	-		DDA3937_RS10355	0.30	-0.4
2,332,524	+		DDA3937_RS10355	0.40	+0.3
2,332,525	-		DDA3937_RS10355	0.41	-3.2
2,332,538	+		DDA3937_RS10355	0.43	+0.4
2,332,604	+		DDA3937_RS10355	0.54	-1.2
2,332,672	+		DDA3937_RS10355	0.65	+0.2
2,332,672	+		DDA3937_RS10355	0.65	-1.1
2,332,672	+		DDA3937_RS10355	0.65	-1.3
2,332,677	-		DDA3937_RS10355	0.66	-0.6
2,332,677	-		DDA3937_RS10355	0.66	-0.7
2,332,677	-		DDA3937_RS10355	0.66	+0.4
2,332,745	+		DDA3937_RS10355	0.77	-0.0
2,332,745	+		DDA3937_RS10355	0.77	-1.0
2,332,745	+		DDA3937_RS10355	0.77	+0.7
2,332,746	-		DDA3937_RS10355	0.77	-1.5
2,332,816	+		DDA3937_RS10355	0.89	-0.0
2,332,816	+		DDA3937_RS10355	0.89	-1.3
2,332,816	+		DDA3937_RS10355	0.89	-0.3
2,332,817	-		DDA3937_RS10355	0.89	-0.1
2,332,817	-		DDA3937_RS10355	0.89	-1.0
2,332,843	-				+0.3
2,332,843	-				-2.2
2,332,869	-				-0.9
2,332,890	+				-0.5
2,332,890	+				+0.6
2,332,890	+				-2.8
2,332,890	+				-0.5
2,332,890	+				-0.0
2,332,890	+				-0.4
2,332,890	+				-2.0
2,332,890	+				+2.2
2,332,890	+				-0.8
2,332,890	+				-1.1
2,332,891	-				-2.0
2,332,891	-				-1.3
2,332,891	-				+0.2
2,332,891	-				-1.2
2,332,891	-				-1.6
2,332,891	-				-1.2
2,332,891	-				-2.8
2,332,891	-				+1.8
2,332,891	-				-1.2
2,332,891	-				-0.0
2,332,891	-				+0.4
2,332,892	+				+0.3
2,332,894	+				+0.6
2,332,894	+				-1.2
2,332,895	-				-0.5
2,332,895	-				-0.4
2,332,917	+				-0.9
2,332,917	+				-0.5
2,332,918	-				-0.6
2,332,920	+				+0.5
2,332,921	-				+0.4
2,332,931	+				+0.4
2,332,977	+				-1.8
2,332,979	+				+0.1
2,332,979	+				-0.9
2,332,988	+				+0.5
2,332,989	-				-0.4
2,333,098	-				-0.3
2,333,146	-				-0.2
2,333,163	+				-0.5
2,333,228	-				-0.2
2,333,237	+				+1.4
2,333,238	-				-0.8
2,333,241	+				+0.0
2,333,269	+				-0.1
2,333,295	+				-0.5
2,333,295	+				-0.1
2,333,296	-				-0.5
2,333,296	-				+0.3
2,333,296	-				-0.5
2,333,297	+				-2.3
2,333,297	+				-1.0
2,333,297	+				-1.3
2,333,297	+				+0.2
2,333,298	-				-1.2
2,333,632	-				+3.4
2,333,696	-				-0.5
2,333,696	-				-2.2
2,333,712	+				-1.2
2,333,712	+				-1.0
2,333,713	-				+0.8
2,333,713	-				-0.5
2,333,713	-				+1.1
2,333,713	-				+0.6
2,333,902	-		DDA3937_RS10360	0.17	+0.1
2,333,919	+		DDA3937_RS10360	0.17	+1.1
2,333,920	-		DDA3937_RS10360	0.17	+0.4
2,333,920	-		DDA3937_RS10360	0.17	-0.4
2,334,087	-		DDA3937_RS10360	0.23	+1.2
2,334,102	+		DDA3937_RS10360	0.24	+2.7
2,334,166	+		DDA3937_RS10360	0.26	-0.8
2,334,166	+		DDA3937_RS10360	0.26	+0.3
2,334,167	-		DDA3937_RS10360	0.26	+0.5
2,334,170	+		DDA3937_RS10360	0.27	+1.0
2,334,170	+		DDA3937_RS10360	0.27	-0.5
2,334,170	+		DDA3937_RS10360	0.27	-1.5
2,334,170	+		DDA3937_RS10360	0.27	-2.0
2,334,170	+		DDA3937_RS10360	0.27	+1.6
2,334,170	+		DDA3937_RS10360	0.27	-0.2
2,334,170	+		DDA3937_RS10360	0.27	-0.8
2,334,170	+		DDA3937_RS10360	0.27	+0.9
2,334,170	+		DDA3937_RS10360	0.27	-0.0
2,334,170	+				+1.5
2,334,170	+		DDA3937_RS10360	0.27	+0.3
2,334,170	+		DDA3937_RS10360	0.27	-0.7
2,334,171	-		DDA3937_RS10360	0.27	-1.3
2,334,171	-				-0.2
2,334,171	-				-0.8
2,334,171	-		DDA3937_RS10360	0.27	+1.2
2,334,171	-		DDA3937_RS10360	0.27	+1.4
2,334,171	-				-1.2
2,334,171	-		DDA3937_RS10360	0.27	-0.4
2,334,281	+		DDA3937_RS10360	0.31	+1.4
2,334,297	-		DDA3937_RS10360	0.31	-1.0
2,334,413	+		DDA3937_RS10360	0.36	-1.0
2,334,413	+		DDA3937_RS10360	0.36	+0.1
2,334,414	-		DDA3937_RS10360	0.36	+1.0
2,334,418	-		DDA3937_RS10360	0.36	-0.5
2,334,418	-		DDA3937_RS10360	0.36	-1.5
2,334,418	-		DDA3937_RS10360	0.36	+0.7
2,334,418	-		DDA3937_RS10360	0.36	+0.5
2,334,479	+		DDA3937_RS10360	0.38	-0.8
2,334,479	+		DDA3937_RS10360	0.38	-0.1
2,334,479	+		DDA3937_RS10360	0.38	+0.8
2,334,479	+		DDA3937_RS10360	0.38	+1.0
2,334,479	+		DDA3937_RS10360	0.38	-0.6
2,334,479	+		DDA3937_RS10360	0.38	+0.0
2,334,479	+		DDA3937_RS10360	0.38	-1.4
2,334,479	+		DDA3937_RS10360	0.38	+0.4
2,334,479	+		DDA3937_RS10360	0.38	-0.6
2,334,479	+		DDA3937_RS10360	0.38	-0.5
2,334,480	-		DDA3937_RS10360	0.38	+0.9
2,334,480	-		DDA3937_RS10360	0.38	-1.0
2,334,480	-		DDA3937_RS10360	0.38	+1.2
2,334,480	-		DDA3937_RS10360	0.38	+0.4
2,334,480	-		DDA3937_RS10360	0.38	-1.2
2,334,484	-		DDA3937_RS10360	0.38	+0.8
2,334,550	-		DDA3937_RS10360	0.41	+0.7
2,334,657	+		DDA3937_RS10360	0.45	+0.0
2,334,657	+		DDA3937_RS10360	0.45	+1.2
2,334,657	+		DDA3937_RS10360	0.45	+0.7
2,334,658	-		DDA3937_RS10360	0.45	+0.1
2,334,672	-		DDA3937_RS10360	0.45	-2.0
2,334,672	-		DDA3937_RS10360	0.45	+1.0
2,334,672	-		DDA3937_RS10360	0.45	-0.0
2,334,682	-		DDA3937_RS10360	0.46	+0.5
2,334,773	+		DDA3937_RS10360	0.49	+0.3
2,334,773	+		DDA3937_RS10360	0.49	-0.5
2,334,773	+		DDA3937_RS10360	0.49	+0.6
2,334,804	+		DDA3937_RS10360	0.50	+1.8
2,334,805	-		DDA3937_RS10360	0.50	+4.1
2,334,805	-		DDA3937_RS10360	0.50	+0.5
2,334,805	-		DDA3937_RS10360	0.50	-0.2
2,334,819	+		DDA3937_RS10360	0.51	-0.0
2,334,832	-		DDA3937_RS10360	0.51	+1.9
2,334,832	-		DDA3937_RS10360	0.51	+0.4
2,334,930	-		DDA3937_RS10360	0.55	-0.1
2,334,930	-		DDA3937_RS10360	0.55	-1.1
2,334,963	+		DDA3937_RS10360	0.56	-0.4
2,335,040	+		DDA3937_RS10360	0.59	-0.2
2,335,040	+		DDA3937_RS10360	0.59	-2.3
2,335,041	-		DDA3937_RS10360	0.59	-0.1
2,335,124	+		DDA3937_RS10360	0.62	+0.6
2,335,186	+		DDA3937_RS10360	0.64	+1.5
2,335,224	+		DDA3937_RS10360	0.66	+0.5
2,335,379	+		DDA3937_RS10360	0.71	-0.1
2,335,379	+		DDA3937_RS10360	0.71	+2.2
2,335,379	+		DDA3937_RS10360	0.71	-1.5
2,335,379	+		DDA3937_RS10360	0.71	-0.5
2,335,380	-		DDA3937_RS10360	0.71	+1.2
2,335,380	-		DDA3937_RS10360	0.71	+0.2
2,335,547	+		DDA3937_RS10360	0.78	-0.2
2,335,548	-		DDA3937_RS10360	0.78	+0.6
2,335,548	-		DDA3937_RS10360	0.78	-0.2
2,335,559	-		DDA3937_RS10360	0.78	-2.2
2,335,559	-		DDA3937_RS10360	0.78	+0.2
2,335,559	-		DDA3937_RS10360	0.78	-1.2
2,335,559	-		DDA3937_RS10360	0.78	+1.1
2,335,714	-		DDA3937_RS10360	0.84	+1.0
2,335,788	+		DDA3937_RS10360	0.86	+2.2
2,335,789	-		DDA3937_RS10360	0.86	-0.2
2,335,789	-		DDA3937_RS10360	0.86	+0.6
2,335,875	+		DDA3937_RS10360	0.90	+3.3
2,335,875	+		DDA3937_RS10360	0.90	+0.5
2,335,875	+				+1.8
2,335,876	-		DDA3937_RS10360	0.90	+1.0
2,335,876	-		DDA3937_RS10360	0.90	-0.2
2,335,914	+				+0.8
2,335,914	+				-0.5
2,335,914	+				+0.5
2,335,915	-				-1.7
2,335,915	-				+0.8
2,335,915	-				+0.7
2,335,916	+				+1.3
2,335,917	-				+0.5
2,335,917	-				+0.4
2,335,925	+				-1.2
2,335,925	+				+0.6
2,335,925	+				+0.8
2,335,925	+				+0.1
2,335,925	+				+1.0
2,335,926	-				+0.8
2,335,926	-				+2.1
2,335,926	-				-1.2
2,335,926	-				+0.7
2,335,926	-				-0.2
2,335,926	-				+0.5
2,335,932	-				-0.8
2,335,932	-				+0.4
2,335,932	-				-1.0
2,335,962	+				-0.7
2,335,962	+				-0.8
2,335,972	-				+1.6
2,336,016	+				-2.8
2,336,017	-				+0.3
2,336,154	+				+1.9
2,336,155	-				-1.0
2,336,167	+				-0.1
2,336,167	+				+0.4
2,336,167	+				-0.8
2,336,173	+				+1.4
2,336,202	+				+0.3
2,336,206	+				+1.2
2,336,206	+				-0.1
2,336,206	+				-0.8
2,336,207	-				-0.1
2,336,213	+				-2.5
2,336,215	+				-0.2
2,336,215	+				-0.6
2,336,215	+				+0.3
2,336,215	+				+0.5
2,336,215	+				-0.4
2,336,216	-				-0.5
2,336,216	-				-0.5
2,336,216	-				+0.8
2,336,216	-				-2.9
2,336,216	-				-1.3
2,336,216	-				+2.5
2,336,216	-				-0.6
2,336,216	-				-0.2
2,336,239	-				+0.1
2,336,304	+				+0.8
2,336,305	-				+0.8
2,336,527	+				-1.0
2,336,527	+				-1.1
2,336,528	-				-0.8
2,336,531	-				-2.2
2,336,542	+				+0.1
2,336,542	+				-1.3
2,336,542	+				+0.2
2,336,543	-				-0.2
2,336,582	+				-0.7
2,336,582	+				-1.4
2,336,583	-				+1.5
2,336,586	+				-1.0
2,336,587	-				-1.2
2,336,587	-				-1.5
2,336,619	+				-1.3
2,336,620	-				-0.2
2,336,620	-				-1.6
2,336,624	+				-0.9
2,336,625	-				+0.1
2,336,629	+				+1.8
2,336,648	-				+0.1
2,336,684	-				-0.8
2,336,754	+				+5.7
2,336,795	-		DDA3937_RS10370	0.14	-2.0
2,336,797	+				+1.8
2,336,811	-		DDA3937_RS10370	0.17	-0.8
2,336,964	+		DDA3937_RS10370	0.41	-2.1
2,336,965	-		DDA3937_RS10370	0.41	-1.2
2,336,986	-		DDA3937_RS10370	0.44	+0.2
2,337,008	-		DDA3937_RS10370	0.47	-0.8
2,337,053	-		DDA3937_RS10370	0.54	-0.3