Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09375

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,112,654	+				-1.1
2,112,654	+				-0.7
2,112,654	+				+0.9
2,112,654	+				-0.8
2,112,654	+				+1.9
2,112,655	-				+0.9
2,112,655	-				-0.7
2,112,655	-				-0.2
2,112,686	+				-0.9
2,112,855	-		DDA3937_RS09370	0.16	-0.3
2,113,094	-		DDA3937_RS09370	0.51	-0.8
2,113,094	-				+0.3
2,113,123	-		DDA3937_RS09370	0.56	-1.9
2,113,462	+				-2.0
2,113,493	+				-0.7
2,113,494	-				-0.8
2,113,506	+				+4.3
2,113,506	+				-0.4
2,113,507	-				+1.1
2,113,517	-				-0.9
2,113,517	-				-1.5
2,113,611	-				-1.5
2,113,649	-				+0.0
2,113,829	+		DDA3937_RS09375	0.23	-0.1
2,113,829	+		DDA3937_RS09375	0.23	-0.3
2,113,829	+		DDA3937_RS09375	0.23	-0.3
2,113,830	-		DDA3937_RS09375	0.23	+0.6
2,113,830	-		DDA3937_RS09375	0.23	+0.9
2,113,848	+		DDA3937_RS09375	0.24	-0.1
2,113,848	+		DDA3937_RS09375	0.24	-0.3
2,113,848	+		DDA3937_RS09375	0.24	-1.1
2,113,848	+		DDA3937_RS09375	0.24	+1.0
2,113,848	+		DDA3937_RS09375	0.24	+2.5
2,113,848	+		DDA3937_RS09375	0.24	-0.9
2,113,882	+		DDA3937_RS09375	0.27	-1.1
2,113,883	-		DDA3937_RS09375	0.28	-0.2
2,113,966	+		DDA3937_RS09375	0.35	-1.2
2,113,966	+				-1.4
2,113,967	-		DDA3937_RS09375	0.35	-0.5
2,114,059	+		DDA3937_RS09375	0.43	-2.3
2,114,059	+		DDA3937_RS09375	0.43	-0.3
2,114,059	+		DDA3937_RS09375	0.43	-0.2
2,114,060	-		DDA3937_RS09375	0.43	-0.4
2,114,060	-		DDA3937_RS09375	0.43	+0.3
2,114,060	-		DDA3937_RS09375	0.43	-1.0
2,114,060	-		DDA3937_RS09375	0.43	-2.0
2,114,284	-		DDA3937_RS09375	0.62	-0.5
2,114,342	+		DDA3937_RS09375	0.67	+0.2
2,114,392	+		DDA3937_RS09375	0.72	-0.3
2,114,485	+		DDA3937_RS09375	0.80	-0.3
2,114,486	-		DDA3937_RS09375	0.80	+1.5
2,114,486	-		DDA3937_RS09375	0.80	-0.0
2,114,561	+		DDA3937_RS09375	0.87	-0.4
2,114,561	+		DDA3937_RS09375	0.87	-1.2
2,114,561	+		DDA3937_RS09375	0.87	-0.7
2,114,561	+		DDA3937_RS09375	0.87	-0.8
2,114,561	+		DDA3937_RS09375	0.87	-1.4
2,114,562	-		DDA3937_RS09375	0.87	-0.4
2,114,562	-		DDA3937_RS09375	0.87	+0.1
2,114,562	-		DDA3937_RS09375	0.87	-0.0
2,114,562	-		DDA3937_RS09375	0.87	+0.1
2,114,562	-		DDA3937_RS09375	0.87	-0.0
2,114,762	-				+1.5
2,114,834	+		DDA3937_RS09380	0.16	+0.3
2,114,834	+		DDA3937_RS09380	0.16	-0.0
2,114,835	-		DDA3937_RS09380	0.16	-0.2
2,114,835	-		DDA3937_RS09380	0.16	-1.9
2,114,835	-		DDA3937_RS09380	0.16	-1.1
2,114,835	-		DDA3937_RS09380	0.16	+2.4
2,114,835	-		DDA3937_RS09380	0.16	-0.6
2,114,891	+				-0.7
2,114,891	+		DDA3937_RS09380	0.23	+1.5
2,114,891	+		DDA3937_RS09380	0.23	-0.6
2,114,891	+		DDA3937_RS09380	0.23	+0.7
2,114,892	-		DDA3937_RS09380	0.23	-3.2
2,114,892	-		DDA3937_RS09380	0.23	+0.9
2,114,892	-		DDA3937_RS09380	0.23	+0.2
2,114,949	+		DDA3937_RS09380	0.31	+0.4
2,114,950	-		DDA3937_RS09380	0.31	-0.9
2,114,950	-		DDA3937_RS09380	0.31	-1.5
2,115,011	-		DDA3937_RS09380	0.39	-0.3
2,115,113	+		DDA3937_RS09380	0.53	-0.5
2,115,113	+		DDA3937_RS09380	0.53	+0.0
2,115,113	+		DDA3937_RS09380	0.53	+0.1
2,115,183	+		DDA3937_RS09380	0.62	+0.6
2,115,185	+		DDA3937_RS09380	0.62	-0.4
2,115,185	+		DDA3937_RS09380	0.62	+0.9
2,115,186	-		DDA3937_RS09380	0.62	-0.3
2,115,186	-		DDA3937_RS09380	0.62	-0.8
2,115,186	-		DDA3937_RS09380	0.62	-1.1
2,115,186	-		DDA3937_RS09380	0.62	-1.0
2,115,186	-		DDA3937_RS09380	0.62	-2.1
2,115,186	-		DDA3937_RS09380	0.62	-0.2
2,115,186	-		DDA3937_RS09380	0.62	-1.7
2,115,221	+		DDA3937_RS09380	0.67	-1.7
2,115,221	+		DDA3937_RS09380	0.67	+0.5
2,115,221	+		DDA3937_RS09380	0.67	+0.7
2,115,222	-		DDA3937_RS09380	0.67	-1.7
2,115,222	-		DDA3937_RS09380	0.67	-1.1
2,115,222	-		DDA3937_RS09380	0.67	+0.6
2,115,222	-		DDA3937_RS09380	0.67	-0.8
2,115,242	+		DDA3937_RS09380	0.70	+1.3
2,115,243	-		DDA3937_RS09380	0.70	+0.3
2,115,243	-		DDA3937_RS09380	0.70	-0.9
2,115,243	-		DDA3937_RS09380	0.70	-0.7
2,115,275	+		DDA3937_RS09380	0.74	+0.0
2,115,275	+		DDA3937_RS09380	0.74	+1.6
2,115,275	+		DDA3937_RS09380	0.74	-0.0
2,115,275	+		DDA3937_RS09380	0.74	-0.2
2,115,275	+		DDA3937_RS09380	0.74	-0.7
2,115,275	+		DDA3937_RS09380	0.74	-1.3
2,115,275	+		DDA3937_RS09380	0.74	-1.7
2,115,276	-		DDA3937_RS09380	0.74	-0.5
2,115,276	-		DDA3937_RS09380	0.74	+0.2
2,115,276	-		DDA3937_RS09380	0.74	+0.2
2,115,278	+		DDA3937_RS09380	0.74	+0.5
2,115,278	+		DDA3937_RS09380	0.74	-1.6
2,115,305	+		DDA3937_RS09380	0.78	-0.6
2,115,305	+		DDA3937_RS09380	0.78	-0.6
2,115,305	+		DDA3937_RS09380	0.78	+1.6
2,115,306	-		DDA3937_RS09380	0.78	-0.1
2,115,306	-		DDA3937_RS09380	0.78	-0.4
2,115,331	+		DDA3937_RS09380	0.81	-0.1
2,115,332	-		DDA3937_RS09380	0.81	-1.4
2,115,366	-		DDA3937_RS09380	0.86	+0.5
2,115,366	-		DDA3937_RS09380	0.86	+0.6
2,115,366	-		DDA3937_RS09380	0.86	+1.2
2,115,371	+		DDA3937_RS09380	0.87	+0.9
2,115,372	-		DDA3937_RS09380	0.87	+0.2
2,115,393	+		DDA3937_RS09380	0.90	-1.1
2,115,394	-		DDA3937_RS09380	0.90	-0.8
2,115,496	+				+1.3
2,115,496	+				-0.6
2,115,496	+				+0.4
2,115,500	+				+0.5
2,115,500	+				+0.6
2,115,500	+				+0.5
2,115,501	-				-0.9
2,115,501	-				+0.9
2,115,501	-				-0.7
2,115,517	+				+1.7
2,115,562	+				-1.4
2,115,671	-				-2.1
2,115,671	-				-1.6