Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09335

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,098,517	+		DDA3937_RS09330	0.62	-0.5
2,098,517	+		DDA3937_RS09330	0.62	-1.0
2,098,518	-		DDA3937_RS09330	0.62	-1.7
2,098,638	+		DDA3937_RS09330	0.76	-2.1
2,098,638	+		DDA3937_RS09330	0.76	-3.0
2,098,639	-		DDA3937_RS09330	0.76	-2.5
2,098,649	+		DDA3937_RS09330	0.77	+1.1
2,098,827	+				+0.7
2,098,827	+				-0.4
2,098,827	+				+1.5
2,098,827	+				-2.1
2,098,828	-				+0.5
2,098,828	-				-0.9
2,098,828	-				-2.4
2,098,828	-				+0.2
2,098,828	-				+2.2
2,098,828	-				+0.3
2,098,828	-				+0.3
2,098,828	-				-1.0
2,098,828	-				-0.7
2,098,887	-				-1.9
2,098,910	+				+0.5
2,098,911	-				-0.5
2,098,911	-				-0.1
2,098,911	-				-0.4
2,098,911	-				-2.3
2,098,911	-				+0.2
2,098,911	-				-2.0
2,098,911	-				+0.7
2,098,975	+				-1.3
2,098,975	+				+1.1
2,098,975	+				+0.8
2,098,976	-				+0.2
2,098,976	-				+0.0
2,098,976	-				-1.1
2,098,976	-				-0.1
2,098,976	-				+1.6
2,098,976	-				+2.7
2,098,976	-				-0.6
2,098,976	-				-0.4
2,099,021	+				+1.2
2,099,041	+				-0.1
2,099,041	+				-0.5
2,099,041	+				+0.2
2,099,041	+				-0.8
2,099,042	-				-1.9
2,099,042	-				+0.2
2,099,042	-				-0.7
2,099,046	-				-1.8
2,099,046	-				-0.0
2,099,048	-				-1.2
2,099,060	+				+1.0
2,099,060	+				+0.1
2,099,076	+				-0.2
2,099,076	+				-0.6
2,099,076	+				+5.5
2,099,077	-				-0.2
2,099,078	+				-2.1
2,099,078	+				-0.1
2,099,078	+				+0.9
2,099,079	-				+1.1
2,099,079	-				+3.6
2,099,083	-				+3.1
2,099,098	+				+2.8
2,099,110	+				-0.9
2,099,132	+				-1.4
2,099,132	+				-1.4
2,099,133	-				-1.8
2,099,151	+				-0.1
2,099,152	-				-0.5
2,099,169	-				-0.4
2,099,174	+				-0.1
2,099,175	-				+2.3
2,099,178	+				-0.5
2,099,178	+				+0.9
2,099,178	+				+0.5
2,099,179	-				+2.4
2,099,179	-				+0.2
2,099,184	+				+1.1
2,099,184	+				+0.0
2,099,184	+				-1.4
2,099,185	-				-0.5
2,099,220	-				-0.3
2,099,247	+				-0.5
2,099,269	+				-0.4
2,099,349	+				-1.9
2,099,350	-				-0.7
2,099,358	-				+0.9
2,099,412	+				-0.6
2,099,412	+				+2.0
2,099,413	-				+0.5
2,099,416	+				+0.2
2,099,416	+				+0.2
2,099,417	-				+7.1
2,099,486	+				-3.1
2,099,486	+				+0.2
2,099,489	+				-2.1
2,099,490	-				-0.1
2,099,522	-				-0.3
2,099,550	+				-0.3
2,099,550	+				-0.8
2,099,550	+				-1.5
2,099,568	+				-0.7
2,099,569	-				-1.6
2,099,607	+				+0.3
2,099,607	+				-0.0
2,099,607	+				-0.6
2,099,608	-				-0.2
2,099,608	-				+1.2
2,099,608	-				+0.9
2,099,612	-				+0.5
2,099,657	+				-0.9
2,099,662	+				-0.3
2,099,663	-				-0.7
2,099,663	-				-0.7
2,099,663	-				-1.0
2,099,663	-				-1.9
2,099,719	+		DDA3937_RS09335	0.13	-0.7
2,099,719	+		DDA3937_RS09335	0.13	+0.2
2,099,719	+		DDA3937_RS09335	0.13	+0.2
2,099,945	+		DDA3937_RS09335	0.27	-1.7
2,099,946	-		DDA3937_RS09335	0.27	-0.1
2,100,011	+		DDA3937_RS09335	0.31	+0.3
2,100,011	+		DDA3937_RS09335	0.31	-0.0
2,100,011	+		DDA3937_RS09335	0.31	+0.1
2,100,024	+		DDA3937_RS09335	0.32	-1.5
2,100,067	+		DDA3937_RS09335	0.35	-0.8
2,100,067	+		DDA3937_RS09335	0.35	-0.7
2,100,067	+		DDA3937_RS09335	0.35	-1.8
2,100,067	+		DDA3937_RS09335	0.35	+0.1
2,100,067	+		DDA3937_RS09335	0.35	+0.2
2,100,134	+		DDA3937_RS09335	0.39	+0.9
2,100,146	+		DDA3937_RS09335	0.39	-1.5
2,100,146	+		DDA3937_RS09335	0.39	-0.1
2,100,146	+		DDA3937_RS09335	0.39	-0.5
2,100,146	+		DDA3937_RS09335	0.39	-0.5
2,100,146	+		DDA3937_RS09335	0.39	+0.5
2,100,146	+		DDA3937_RS09335	0.39	-0.3
2,100,146	+		DDA3937_RS09335	0.39	-1.3
2,100,147	-		DDA3937_RS09335	0.40	+0.1
2,100,147	-		DDA3937_RS09335	0.40	+1.0
2,100,169	+		DDA3937_RS09335	0.41	+0.5
2,100,219	+		DDA3937_RS09335	0.44	-0.3
2,100,219	+		DDA3937_RS09335	0.44	-0.9
2,100,219	+		DDA3937_RS09335	0.44	-0.0
2,100,220	-		DDA3937_RS09335	0.44	+1.5
2,100,220	-		DDA3937_RS09335	0.44	+0.5
2,100,260	+		DDA3937_RS09335	0.46	-1.2
2,100,260	+		DDA3937_RS09335	0.46	-0.0
2,100,261	-		DDA3937_RS09335	0.47	-1.1
2,100,261	-		DDA3937_RS09335	0.47	-1.1
2,100,261	-		DDA3937_RS09335	0.47	-2.1
2,100,313	+		DDA3937_RS09335	0.50	-1.9
2,100,349	+		DDA3937_RS09335	0.52	+0.8
2,100,349	+		DDA3937_RS09335	0.52	+0.5
2,100,350	-		DDA3937_RS09335	0.52	+0.3
2,100,466	+		DDA3937_RS09335	0.59	+0.6
2,100,466	+		DDA3937_RS09335	0.59	-1.5
2,100,467	-		DDA3937_RS09335	0.59	+0.5
2,100,589	+		DDA3937_RS09335	0.67	-2.3
2,100,589	+		DDA3937_RS09335	0.67	-1.1
2,100,589	+		DDA3937_RS09335	0.67	-1.9
2,100,590	-		DDA3937_RS09335	0.67	+0.6
2,100,590	-		DDA3937_RS09335	0.67	-0.1
2,100,590	-		DDA3937_RS09335	0.67	-2.6
2,100,607	+		DDA3937_RS09335	0.68	-0.0
2,100,607	+				+2.9
2,100,690	+		DDA3937_RS09335	0.73	+0.4
2,100,693	+		DDA3937_RS09335	0.73	-0.4
2,100,832	+		DDA3937_RS09335	0.82	-1.7
2,100,832	+		DDA3937_RS09335	0.82	+1.0
2,100,833	-		DDA3937_RS09335	0.82	-1.2
2,100,833	-		DDA3937_RS09335	0.82	-0.4
2,100,836	-		DDA3937_RS09335	0.82	-1.5
2,101,133	+				-0.6
2,101,133	+				-0.8
2,101,134	-				-0.4
2,101,179	+				-1.0
2,101,179	+				-2.1
2,101,179	+				-1.2
2,101,179	+				+0.2
2,101,180	-				-0.3
2,101,182	+				-0.6
2,101,183	-				+1.6
2,101,264	+				+1.9
2,101,264	+				+0.6
2,101,264	+				+1.4