Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09225

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,072,246	+		DDA3937_RS09220	0.42	+0.5
2,072,287	+		DDA3937_RS09220	0.45	+2.3
2,072,288	-		DDA3937_RS09220	0.45	-1.4
2,072,291	+		DDA3937_RS09220	0.45	-0.9
2,072,291	+		DDA3937_RS09220	0.45	+4.0
2,072,291	+		DDA3937_RS09220	0.45	+0.4
2,072,291	+		DDA3937_RS09220	0.45	-0.8
2,072,292	-		DDA3937_RS09220	0.45	-1.1
2,072,292	-		DDA3937_RS09220	0.45	-0.9
2,072,292	-				-1.1
2,072,292	-		DDA3937_RS09220	0.45	-0.4
2,072,324	+		DDA3937_RS09220	0.47	-0.4
2,072,366	+		DDA3937_RS09220	0.51	-0.6
2,072,453	-		DDA3937_RS09220	0.57	+1.1
2,072,453	-		DDA3937_RS09220	0.57	-2.7
2,072,453	-		DDA3937_RS09220	0.57	-0.9
2,072,501	-		DDA3937_RS09220	0.61	+0.6
2,072,501	-		DDA3937_RS09220	0.61	-0.7
2,072,504	+		DDA3937_RS09220	0.61	-0.0
2,072,504	+		DDA3937_RS09220	0.61	+0.4
2,072,516	+		DDA3937_RS09220	0.62	+1.6
2,072,517	-		DDA3937_RS09220	0.62	-0.1
2,072,540	+		DDA3937_RS09220	0.64	-0.2
2,072,576	+		DDA3937_RS09220	0.66	-1.0
2,072,577	-		DDA3937_RS09220	0.66	-1.7
2,072,580	+		DDA3937_RS09220	0.67	+1.8
2,072,580	+		DDA3937_RS09220	0.67	-0.4
2,072,581	-		DDA3937_RS09220	0.67	-0.4
2,072,581	-		DDA3937_RS09220	0.67	+1.7
2,072,581	-		DDA3937_RS09220	0.67	+0.1
2,072,589	-		DDA3937_RS09220	0.67	-0.9
2,072,593	+		DDA3937_RS09220	0.68	-0.1
2,072,593	+		DDA3937_RS09220	0.68	-0.8
2,072,593	+		DDA3937_RS09220	0.68	+0.1
2,072,593	+		DDA3937_RS09220	0.68	+0.2
2,072,594	-		DDA3937_RS09220	0.68	-0.4
2,072,646	-		DDA3937_RS09220	0.72	-0.5
2,072,674	+		DDA3937_RS09220	0.74	-0.9
2,072,705	+		DDA3937_RS09220	0.76	-0.2
2,072,711	+		DDA3937_RS09220	0.76	-0.3
2,072,712	-		DDA3937_RS09220	0.76	-1.1
2,072,745	-		DDA3937_RS09220	0.79	+0.7
2,072,768	+		DDA3937_RS09220	0.81	+1.9
2,072,786	+		DDA3937_RS09220	0.82	+0.3
2,072,786	+		DDA3937_RS09220	0.82	-1.1
2,072,787	-		DDA3937_RS09220	0.82	-1.9
2,072,858	-		DDA3937_RS09220	0.87	-2.2
2,072,858	-				+3.5
2,072,858	-		DDA3937_RS09220	0.87	-1.1
2,072,859	+		DDA3937_RS09220	0.87	+0.3
2,072,859	+		DDA3937_RS09220	0.87	-0.9
2,072,859	+		DDA3937_RS09220	0.87	+0.3
2,072,860	-		DDA3937_RS09220	0.88	+1.5
2,072,905	+				+2.0
2,072,986	+				+0.1
2,072,987	-				+2.5
2,072,987	-				+0.0
2,072,998	+				-0.7
2,072,998	+				-0.1
2,072,998	+				-0.9
2,072,999	-				+1.5
2,072,999	-				-0.4
2,072,999	-				-0.1
2,073,023	-				+1.1
2,073,024	+				+0.4
2,073,034	+				-0.4
2,073,034	+				+0.8
2,073,034	+				-0.6
2,073,034	+				-0.7
2,073,034	+				+2.7
2,073,035	-				-0.1
2,073,035	-				-0.9
2,073,035	-				-1.7
2,073,036	+				-0.7
2,073,036	+				-0.4
2,073,036	+				+0.2
2,073,036	+				+0.6
2,073,061	+				+1.5
2,073,075	-				-1.4
2,073,075	-				-2.3
2,073,113	+				-0.8
2,073,249	-				-2.8
2,073,292	-		DDA3937_RS09225	0.10	-0.1
2,073,301	+		DDA3937_RS09225	0.11	-1.2
2,073,368	+		DDA3937_RS09225	0.17	-0.9
2,073,369	-		DDA3937_RS09225	0.17	-0.7
2,073,369	-		DDA3937_RS09225	0.17	+0.0
2,073,465	+		DDA3937_RS09225	0.25	-0.4
2,073,630	-		DDA3937_RS09225	0.39	-0.1
2,073,630	-		DDA3937_RS09225	0.39	-0.2
2,073,639	+		DDA3937_RS09225	0.40	-0.7
2,073,640	-		DDA3937_RS09225	0.40	-1.0
2,073,650	+		DDA3937_RS09225	0.40	+1.1
2,073,651	-		DDA3937_RS09225	0.41	-0.4
2,073,651	-		DDA3937_RS09225	0.41	-0.9
2,073,651	-		DDA3937_RS09225	0.41	+0.3
2,073,698	-		DDA3937_RS09225	0.45	+0.3
2,073,803	-		DDA3937_RS09225	0.53	-0.3
2,073,809	-		DDA3937_RS09225	0.54	+0.2
2,073,827	+		DDA3937_RS09225	0.55	-0.5
2,073,828	-		DDA3937_RS09225	0.55	-0.4
2,073,828	-		DDA3937_RS09225	0.55	-3.4
2,074,024	-		DDA3937_RS09225	0.72	-0.1
2,074,024	-		DDA3937_RS09225	0.72	-0.2
2,074,033	+		DDA3937_RS09225	0.73	-0.1
2,074,041	-		DDA3937_RS09225	0.74	+1.1
2,074,041	-		DDA3937_RS09225	0.74	-0.5
2,074,041	-		DDA3937_RS09225	0.74	-0.9
2,074,044	+		DDA3937_RS09225	0.74	-1.3
2,074,045	-		DDA3937_RS09225	0.74	-2.7
2,074,045	-				+1.6
2,074,058	+		DDA3937_RS09225	0.75	-1.7
2,074,058	+		DDA3937_RS09225	0.75	+0.6
2,074,059	-		DDA3937_RS09225	0.75	-2.4
2,074,134	-		DDA3937_RS09225	0.81	-1.0
2,074,185	-		DDA3937_RS09225	0.86	-1.7
2,074,185	-		DDA3937_RS09225	0.86	-2.6
2,074,210	+		DDA3937_RS09225	0.88	+0.3
2,074,210	+		DDA3937_RS09225	0.88	-1.4
2,074,210	+		DDA3937_RS09225	0.88	-0.1
2,074,210	+		DDA3937_RS09225	0.88	-1.3
2,074,210	+		DDA3937_RS09225	0.88	+0.1
2,074,210	+				+1.9
2,074,211	-		DDA3937_RS09225	0.88	-1.0
2,074,211	-		DDA3937_RS09225	0.88	+0.2
2,074,217	-		DDA3937_RS09225	0.88	-0.8
2,074,405	-				-0.8
2,074,405	-				+0.2
2,074,417	+				-1.1
2,074,470	+				-2.1
2,074,470	+				-0.6
2,074,539	+				-1.4
2,074,540	-				-0.1
2,074,540	-				-3.0
2,074,544	-				+0.3
2,074,560	+				-1.4
2,074,560	+				-0.0
2,074,560	+				-0.9
2,074,561	-				+2.4
2,074,561	-				+0.3
2,074,561	-				-1.3
2,074,561	-				-0.3
2,074,564	+				-1.7
2,074,564	+				-0.4
2,074,564	+				-0.4
2,074,564	+				-0.1
2,074,564	+				+1.0
2,074,564	+				+0.3
2,074,565	-				-1.6
2,074,565	-				+0.3
2,074,565	-				-0.0
2,074,565	-				+0.5
2,074,688	+				-1.3
2,074,689	-				-1.7
2,074,689	-				+0.4
2,074,689	-				+1.0
2,074,689	-				+1.2
2,074,720	+				+1.0
2,074,803	+		DDA3937_RS09230	0.10	-0.6
2,074,803	+		DDA3937_RS09230	0.10	-0.5
2,074,803	+		DDA3937_RS09230	0.10	-1.4
2,074,803	+		DDA3937_RS09230	0.10	-0.1
2,074,804	-		DDA3937_RS09230	0.10	+0.9
2,074,804	-		DDA3937_RS09230	0.10	-1.4
2,074,841	+		DDA3937_RS09230	0.13	+0.4
2,074,841	+				+0.9
2,074,842	-		DDA3937_RS09230	0.13	+0.4
2,074,842	-		DDA3937_RS09230	0.13	-0.7
2,074,842	-		DDA3937_RS09230	0.13	+1.1
2,074,845	+		DDA3937_RS09230	0.14	-0.9
2,074,968	+		DDA3937_RS09230	0.24	+1.3
2,074,968	+		DDA3937_RS09230	0.24	-1.0
2,074,968	+		DDA3937_RS09230	0.24	+0.7
2,074,969	-		DDA3937_RS09230	0.25	+0.1
2,075,142	-		DDA3937_RS09230	0.40	-1.1
2,075,219	+		DDA3937_RS09230	0.46	-2.3
2,075,288	+		DDA3937_RS09230	0.53	+1.0