Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09025

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,032,593	+				+0.3
2,032,597	-				-0.1
2,032,606	+				+0.1
2,032,678	+				+1.0
2,032,727	-				-1.4
2,032,801	+				+0.2
2,032,801	+				-1.3
2,032,807	+				+0.1
2,032,807	+				-0.1
2,032,808	-				-0.1
2,032,815	+				+0.0
2,032,815	+				-0.1
2,032,815	+				-2.3
2,032,816	-				+1.3
2,032,816	-				+0.6
2,032,818	+				-0.6
2,032,818	+				+0.9
2,032,818	+				+0.2
2,032,818	+				-0.3
2,032,818	+				+1.1
2,032,818	+				+0.0
2,032,819	-				-0.2
2,032,819	-				-0.1
2,032,819	-				-1.9
2,032,819	-				-1.4
2,032,831	-				-0.9
2,032,858	-				+0.1
2,032,873	-				-0.2
2,032,873	-				-1.2
2,032,962	+				-0.2
2,033,020	-				+1.7
2,033,091	+				+0.7
2,033,091	+				+0.3
2,033,091	+				-0.9
2,033,092	-				-0.7
2,033,092	-				-0.5
2,033,092	-				+0.6
2,033,092	-				-0.7
2,033,092	-				+0.8
2,033,092	-				-2.4
2,033,093	+				-1.2
2,033,093	+				+1.6
2,033,093	+				+0.4
2,033,093	+				-0.4
2,033,093	+				-0.4
2,033,093	+				-0.1
2,033,094	-				-0.4
2,033,094	-				+0.6
2,033,094	-				+3.1
2,033,121	-				-0.7
2,033,139	-				-1.4
2,033,183	+				-0.7
2,033,183	+				-1.0
2,033,220	+				+0.8
2,033,221	-				+0.8
2,033,221	-				-0.7
2,033,221	-				-1.7
2,033,226	+				-0.9
2,033,226	+				-0.3
2,033,226	+				-1.7
2,033,227	-				-2.2
2,033,239	-				-2.0
2,033,326	-				+1.0
2,033,331	-				+0.3
2,033,337	+				-0.1
2,033,337	+				-2.9
2,033,337	+				+0.4
2,033,338	-				-0.0
2,033,398	-				+0.9
2,033,416	+				+0.4
2,033,416	+				-0.4
2,033,417	-				-1.1
2,033,466	+				-0.5
2,033,467	-				-2.6
2,033,495	-				+0.3
2,033,556	+		DDA3937_RS09025	0.21	-1.1
2,033,563	+		DDA3937_RS09025	0.24	+0.6
2,033,563	+		DDA3937_RS09025	0.24	-1.4
2,033,564	-		DDA3937_RS09025	0.24	+0.7
2,033,564	-				-0.7
2,033,564	-		DDA3937_RS09025	0.24	-0.0
2,033,621	+		DDA3937_RS09025	0.47	+0.1
2,033,621	+		DDA3937_RS09025	0.47	-0.7
2,033,622	-		DDA3937_RS09025	0.47	-0.2
2,033,622	-		DDA3937_RS09025	0.47	-0.2
2,033,622	-		DDA3937_RS09025	0.47	+0.2
2,033,631	+		DDA3937_RS09025	0.51	-1.1
2,033,632	-		DDA3937_RS09025	0.51	-0.4
2,033,632	-		DDA3937_RS09025	0.51	+0.9
2,033,632	-		DDA3937_RS09025	0.51	+1.8
2,033,632	-		DDA3937_RS09025	0.51	+3.8
2,033,668	-		DDA3937_RS09025	0.65	-2.3
2,033,754	+				-0.7
2,033,755	-				-0.7
2,033,755	-				+0.0
2,033,778	+				+1.8
2,033,779	-				-0.6
2,033,779	-				-1.1
2,033,787	+				-0.9
2,033,787	+				-0.2
2,033,787	+				+0.3
2,033,788	-				+0.9
2,033,788	-				-0.3
2,033,792	+				-0.1
2,033,792	+				+0.1
2,033,792	+				+0.9
2,033,832	+				-1.2
2,033,832	+				+0.6
2,033,832	+				+0.6
2,033,832	+				-0.5
2,033,833	-				+0.3
2,033,833	-				+1.8
2,033,833	-				-2.0
2,033,833	-				+0.9
2,033,833	-				+0.9
2,033,833	-				-0.4
2,033,833	-				+0.7
2,033,833	-				+0.6
2,033,833	-				-1.0
2,033,850	+				-2.1
2,033,850	+				+0.7
2,033,850	+				+0.5
2,033,851	-				-0.9
2,033,851	-				-0.7
2,033,851	-				-0.6
2,033,851	-				+1.4
2,033,851	-				-0.4
2,033,851	-				-0.9
2,033,865	+				+0.4
2,033,885	-				-1.9
2,033,901	+				-0.9
2,033,901	+				+0.8
2,033,926	+				-0.3
2,033,926	+				-1.0
2,033,926	+				-1.7
2,033,926	+				-0.5
2,033,927	-				-1.9
2,033,929	-				-0.2
2,033,950	+				-0.4
2,034,010	+		DDA3937_RS09030	0.16	-0.1
2,034,010	+		DDA3937_RS09030	0.16	+1.4
2,034,011	-		DDA3937_RS09030	0.16	+0.9
2,034,011	-		DDA3937_RS09030	0.16	-0.7
2,034,014	+		DDA3937_RS09030	0.17	-0.1
2,034,014	+		DDA3937_RS09030	0.17	-0.8
2,034,015	-		DDA3937_RS09030	0.17	+0.0
2,034,065	-		DDA3937_RS09030	0.28	-0.9
2,034,098	-		DDA3937_RS09030	0.36	-0.0
2,034,104	+		DDA3937_RS09030	0.37	+2.6
2,034,119	-		DDA3937_RS09030	0.41	-0.1
2,034,163	+		DDA3937_RS09030	0.51	-2.6
2,034,163	+		DDA3937_RS09030	0.51	-1.4
2,034,163	+		DDA3937_RS09030	0.51	-0.2
2,034,164	-		DDA3937_RS09030	0.51	-1.1
2,034,164	-		DDA3937_RS09030	0.51	-2.1
2,034,222	-		DDA3937_RS09030	0.64	-0.1
2,034,240	+		DDA3937_RS09030	0.68	+0.1
2,034,241	-		DDA3937_RS09030	0.68	+2.4
2,034,260	-		DDA3937_RS09030	0.73	-0.5
2,034,260	-		DDA3937_RS09030	0.73	-0.5
2,034,268	+		DDA3937_RS09030	0.74	-0.7
2,034,281	+		DDA3937_RS09030	0.77	+0.3
2,034,290	-		DDA3937_RS09030	0.79	+0.5
2,034,314	-		DDA3937_RS09030	0.85	-0.3
2,034,320	+		DDA3937_RS09030	0.86	+1.4
2,034,322	+		DDA3937_RS09030	0.87	+0.5
2,034,322	+		DDA3937_RS09030	0.87	-0.8
2,034,322	+		DDA3937_RS09030	0.87	-0.1
2,034,322	+		DDA3937_RS09030	0.87	-0.5
2,034,322	+		DDA3937_RS09030	0.87	-1.1
2,034,322	+		DDA3937_RS09030	0.87	-0.3
2,034,323	-		DDA3937_RS09030	0.87	-1.2
2,034,323	-		DDA3937_RS09030	0.87	-0.1
2,034,323	-		DDA3937_RS09030	0.87	+1.7
2,034,323	-		DDA3937_RS09030	0.87	+0.6
2,034,326	+		DDA3937_RS09030	0.88	-0.2
2,034,326	+		DDA3937_RS09030	0.88	-0.5
2,034,326	+		DDA3937_RS09030	0.88	+0.5
2,034,326	+		DDA3937_RS09030	0.88	+0.1
2,034,327	-		DDA3937_RS09030	0.88	-0.8
2,034,327	-		DDA3937_RS09030	0.88	-1.0
2,034,327	-		DDA3937_RS09030	0.88	-1.3
2,034,327	-		DDA3937_RS09030	0.88	-0.0
2,034,353	-				+0.6
2,034,378	+				-1.1
2,034,391	-				-0.7
2,034,429	+				-1.1
2,034,430	-				-0.3
2,034,438	+				+0.1
2,034,455	+				-1.4
2,034,455	+				+0.9
2,034,455	+				-1.4
2,034,455	+				-0.1
2,034,455	+				-1.1
2,034,456	-				-1.9
2,034,456	-				+1.1
2,034,456	-				-0.2
2,034,456	-				-0.7
2,034,456	-				+0.6
2,034,456	-				-1.7
2,034,456	-				+0.3
2,034,457	+				-0.7
2,034,457	+				+0.2
2,034,457	+				-0.1
2,034,457	+				+0.0
2,034,457	+				-2.3
2,034,458	-				+2.0
2,034,475	-				+0.5
2,034,498	+				+2.2
2,034,498	+				-0.3
2,034,498	+				+0.4
2,034,503	-				-1.1
2,034,556	+				-2.1
2,034,564	+				-0.6
2,034,565	-				-0.1
2,034,565	-				-0.7
2,034,565	-				-0.5
2,034,565	-				+1.0
2,034,620	+				-0.7
2,034,621	-				-0.9
2,034,621	-				+1.2
2,034,671	+				+1.1
2,034,681	+				-2.3
2,034,682	-				-1.3
2,034,682	-				-2.3
2,034,685	+				-0.7
2,034,685	+				+0.0
2,034,686	-				+0.4
2,034,687	+				+1.2
2,034,687	+				-1.1
2,034,687	+				-0.9
2,034,687	+				-1.4
2,034,687	+				+0.8
2,034,688	-				+0.9
2,034,692	+				+0.6