Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08950

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,019,954	-		DDA3937_RS08940	0.88	-2.1
2,020,023	+				-0.8
2,020,023	+				-0.6
2,020,023	+				-2.3
2,020,023	+				-2.1
2,020,023	+				-1.4
2,020,023	+				-1.4
2,020,024	-				-1.7
2,020,024	-				-0.1
2,020,024	-				+0.2
2,020,024	-				+0.2
2,020,024	-				+0.9
2,020,024	-				+1.4
2,020,028	+				+0.2
2,020,064	+				-0.4
2,020,064	+				-0.4
2,020,064	+				-0.4
2,020,064	+				-0.5
2,020,064	+				-0.3
2,020,064	+				+0.0
2,020,065	-				+0.0
2,020,065	-				-1.4
2,020,065	-				-1.6
2,020,065	-				+1.1
2,020,265	-		DDA3937_RS08945	0.23	-0.4
2,020,282	-		DDA3937_RS08945	0.25	+0.1
2,020,381	+		DDA3937_RS08945	0.37	+0.2
2,020,382	-		DDA3937_RS08945	0.37	-1.4
2,020,425	+		DDA3937_RS08945	0.42	+0.9
2,020,426	-		DDA3937_RS08945	0.42	-1.9
2,020,475	-		DDA3937_RS08945	0.48	+1.7
2,020,475	-		DDA3937_RS08945	0.48	+0.6
2,020,479	+		DDA3937_RS08945	0.48	-0.3
2,020,500	+		DDA3937_RS08945	0.51	-0.8
2,020,501	-		DDA3937_RS08945	0.51	-0.4
2,020,501	-		DDA3937_RS08945	0.51	-3.0
2,020,582	+		DDA3937_RS08945	0.60	-1.5
2,020,582	+		DDA3937_RS08945	0.60	-0.2
2,020,582	+				+0.3
2,020,583	-		DDA3937_RS08945	0.60	-1.7
2,020,583	-		DDA3937_RS08945	0.60	+1.2
2,020,583	-		DDA3937_RS08945	0.60	+0.0
2,020,583	-		DDA3937_RS08945	0.60	-0.3
2,020,592	-				+0.3
2,020,592	-		DDA3937_RS08945	0.61	-0.6
2,020,665	+				+0.9
2,020,666	-		DDA3937_RS08945	0.70	+3.8
2,020,768	-		DDA3937_RS08945	0.82	+0.6
2,020,789	+		DDA3937_RS08945	0.85	+0.1
2,020,789	+		DDA3937_RS08945	0.85	-1.0
2,020,789	+		DDA3937_RS08945	0.85	-0.4
2,020,789	+		DDA3937_RS08945	0.85	+0.9
2,020,789	+		DDA3937_RS08945	0.85	-0.1
2,020,789	+		DDA3937_RS08945	0.85	+1.3
2,020,790	-		DDA3937_RS08945	0.85	+0.4
2,020,790	-		DDA3937_RS08945	0.85	-1.0
2,020,790	-		DDA3937_RS08945	0.85	+1.9
2,020,790	-		DDA3937_RS08945	0.85	-0.7
2,020,790	-		DDA3937_RS08945	0.85	-2.8
2,020,790	-		DDA3937_RS08945	0.85	-2.4
2,020,791	+		DDA3937_RS08945	0.85	-0.5
2,020,791	+		DDA3937_RS08945	0.85	-1.4
2,020,858	-				+0.2
2,020,858	-				+0.7
2,020,858	-				-0.3
2,021,081	-		DDA3937_RS08950	0.16	-0.2
2,021,116	+		DDA3937_RS08950	0.19	-2.1
2,021,116	+		DDA3937_RS08950	0.19	-1.7
2,021,163	-		DDA3937_RS08950	0.24	+1.3
2,021,237	-		DDA3937_RS08950	0.32	-2.4
2,021,334	+		DDA3937_RS08950	0.41	-1.5
2,021,334	+		DDA3937_RS08950	0.41	-1.4
2,021,334	+		DDA3937_RS08950	0.41	-0.3
2,021,334	+		DDA3937_RS08950	0.41	-1.1
2,021,335	-		DDA3937_RS08950	0.41	-1.0
2,021,335	-		DDA3937_RS08950	0.41	-1.1
2,021,335	-		DDA3937_RS08950	0.41	+0.1
2,021,335	-		DDA3937_RS08950	0.41	-0.2
2,021,471	-		DDA3937_RS08950	0.55	-0.1
2,021,612	+		DDA3937_RS08950	0.69	+1.6
2,021,613	-		DDA3937_RS08950	0.69	-2.6
2,021,613	-		DDA3937_RS08950	0.69	-1.1
2,021,675	+		DDA3937_RS08950	0.76	-2.6
2,021,675	+		DDA3937_RS08950	0.76	-0.1
2,021,675	+		DDA3937_RS08950	0.76	-0.1
2,021,676	-		DDA3937_RS08950	0.76	-1.7
2,021,676	-		DDA3937_RS08950	0.76	-0.1
2,021,676	-		DDA3937_RS08950	0.76	-0.5
2,021,677	+		DDA3937_RS08950	0.76	-1.4
2,021,677	+		DDA3937_RS08950	0.76	-0.9
2,021,677	+		DDA3937_RS08950	0.76	-2.1
2,021,678	-		DDA3937_RS08950	0.76	-0.1
2,021,678	-		DDA3937_RS08950	0.76	+0.1
2,021,809	+		DDA3937_RS08950	0.89	-0.2
2,021,809	+		DDA3937_RS08950	0.89	+0.5
2,021,809	+		DDA3937_RS08950	0.89	-0.5
2,021,809	+		DDA3937_RS08950	0.89	-0.1
2,021,810	-		DDA3937_RS08950	0.89	-0.2
2,021,810	-		DDA3937_RS08950	0.89	-1.7
2,021,810	-		DDA3937_RS08950	0.89	+0.2
2,021,810	-		DDA3937_RS08950	0.89	-1.4
2,021,815	+		DDA3937_RS08950	0.90	+1.9
2,021,815	+		DDA3937_RS08950	0.90	+1.4
2,021,816	-				-1.7
2,021,816	-				-1.1
2,021,816	-				-1.3
2,021,816	-				+0.7
2,021,816	-				+0.6
2,021,816	-				-1.4
2,021,816	-				-0.6
2,021,817	+				+0.3
2,021,817	+				+1.4
2,021,817	+				+0.1
2,021,817	+				-0.9
2,021,817	+				-2.3
2,021,817	+				+0.5
2,021,817	+				-0.7
2,021,818	-				+0.0
2,021,818	-				-1.0
2,021,818	-				+0.9
2,021,818	-				-1.9
2,021,818	-				+0.4
2,021,857	+				-1.2
2,021,952	+				-0.5
2,021,953	-				-0.4
2,021,953	-				+0.2
2,021,955	+				+0.2
2,021,956	-				+1.7
2,021,956	-				-1.6
2,021,956	-				+0.0
2,022,043	-		DDA3937_RS08955	0.14	+0.3
2,022,146	+		DDA3937_RS08955	0.24	-0.9
2,022,147	-		DDA3937_RS08955	0.24	+1.1
2,022,193	+		DDA3937_RS08955	0.29	-0.6
2,022,193	+		DDA3937_RS08955	0.29	-0.8
2,022,194	-				-0.4
2,022,194	-		DDA3937_RS08955	0.29	-0.9
2,022,200	+		DDA3937_RS08955	0.30	+1.3
2,022,216	+		DDA3937_RS08955	0.31	-0.8
2,022,217	-		DDA3937_RS08955	0.32	-1.7
2,022,217	-		DDA3937_RS08955	0.32	-2.3
2,022,531	+		DDA3937_RS08955	0.63	-0.8
2,022,531	+		DDA3937_RS08955	0.63	+0.7
2,022,532	-		DDA3937_RS08955	0.63	-0.4
2,022,532	-		DDA3937_RS08955	0.63	-3.2
2,022,532	-		DDA3937_RS08955	0.63	-0.5
2,022,532	-		DDA3937_RS08955	0.63	+1.6
2,022,540	-		DDA3937_RS08955	0.64	-1.0
2,022,594	+		DDA3937_RS08955	0.69	+0.4
2,022,594	+		DDA3937_RS08955	0.69	-1.3
2,022,594	+		DDA3937_RS08955	0.69	+0.7
2,022,594	+		DDA3937_RS08955	0.69	-1.7
2,022,594	+		DDA3937_RS08955	0.69	-0.4
2,022,594	+		DDA3937_RS08955	0.69	-0.8
2,022,594	+		DDA3937_RS08955	0.69	+0.1
2,022,595	-		DDA3937_RS08955	0.70	-0.8
2,022,595	-		DDA3937_RS08955	0.70	-0.3
2,022,595	-		DDA3937_RS08955	0.70	-1.6
2,022,595	-		DDA3937_RS08955	0.70	-0.9
2,022,595	-		DDA3937_RS08955	0.70	+0.7
2,022,636	+		DDA3937_RS08955	0.74	-0.8
2,022,636	+		DDA3937_RS08955	0.74	+0.7
2,022,637	-		DDA3937_RS08955	0.74	-0.4
2,022,637	-		DDA3937_RS08955	0.74	-1.7
2,022,657	+		DDA3937_RS08955	0.76	-0.9
2,022,657	+		DDA3937_RS08955	0.76	+1.3
2,022,658	-		DDA3937_RS08955	0.76	+0.8
2,022,658	-		DDA3937_RS08955	0.76	-1.4
2,022,774	+		DDA3937_RS08955	0.88	-0.5
2,022,775	-		DDA3937_RS08955	0.88	+0.4
2,022,898	-				+0.1