Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08925

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,015,043	+		DDA3937_RS08920	0.54	-1.1
2,015,044	-		DDA3937_RS08920	0.54	+0.3
2,015,044	-		DDA3937_RS08920	0.54	-3.1
2,015,046	+		DDA3937_RS08920	0.54	-0.5
2,015,047	-		DDA3937_RS08920	0.54	+0.9
2,015,047	-		DDA3937_RS08920	0.54	-0.3
2,015,047	-		DDA3937_RS08920	0.54	-1.1
2,015,047	-		DDA3937_RS08920	0.54	-0.4
2,015,081	+		DDA3937_RS08920	0.57	+0.7
2,015,081	+		DDA3937_RS08920	0.57	-1.9
2,015,081	+		DDA3937_RS08920	0.57	-2.9
2,015,081	+		DDA3937_RS08920	0.57	-0.7
2,015,081	+		DDA3937_RS08920	0.57	+0.7
2,015,081	+		DDA3937_RS08920	0.57	+1.4
2,015,081	+		DDA3937_RS08920	0.57	-0.6
2,015,082	-		DDA3937_RS08920	0.57	+0.6
2,015,082	-		DDA3937_RS08920	0.57	+0.3
2,015,082	-		DDA3937_RS08920	0.57	+0.4
2,015,082	-		DDA3937_RS08920	0.57	-0.3
2,015,082	-		DDA3937_RS08920	0.57	-1.2
2,015,082	-		DDA3937_RS08920	0.57	-1.4
2,015,082	-		DDA3937_RS08920	0.57	-0.3
2,015,082	-		DDA3937_RS08920	0.57	-0.0
2,015,082	-		DDA3937_RS08920	0.57	-0.8
2,015,082	-		DDA3937_RS08920	0.57	-0.7
2,015,082	-		DDA3937_RS08920	0.57	-1.1
2,015,085	+		DDA3937_RS08920	0.57	-0.5
2,015,085	+		DDA3937_RS08920	0.57	-0.0
2,015,085	+		DDA3937_RS08920	0.57	-0.5
2,015,085	+		DDA3937_RS08920	0.57	+0.4
2,015,086	-		DDA3937_RS08920	0.57	+0.4
2,015,086	-		DDA3937_RS08920	0.57	-2.1
2,015,086	-		DDA3937_RS08920	0.57	-0.1
2,015,086	-		DDA3937_RS08920	0.57	-2.3
2,015,086	-		DDA3937_RS08920	0.57	-1.1
2,015,086	-		DDA3937_RS08920	0.57	+1.5
2,015,086	-				+1.7
2,015,087	+		DDA3937_RS08920	0.57	-1.1
2,015,087	+		DDA3937_RS08920	0.57	-0.8
2,015,087	+		DDA3937_RS08920	0.57	-1.4
2,015,087	+		DDA3937_RS08920	0.57	+1.0
2,015,087	+		DDA3937_RS08920	0.57	+0.1
2,015,087	+		DDA3937_RS08920	0.57	-1.4
2,015,088	-		DDA3937_RS08920	0.57	-0.7
2,015,088	-		DDA3937_RS08920	0.57	-0.8
2,015,088	-		DDA3937_RS08920	0.57	-0.1
2,015,088	-		DDA3937_RS08920	0.57	-0.9
2,015,088	-		DDA3937_RS08920	0.57	-0.8
2,015,088	-		DDA3937_RS08920	0.57	-1.6
2,015,246	+		DDA3937_RS08920	0.69	+0.2
2,015,246	+		DDA3937_RS08920	0.69	-0.3
2,015,247	-		DDA3937_RS08920	0.69	-0.1
2,015,247	-		DDA3937_RS08920	0.69	-0.9
2,015,247	-		DDA3937_RS08920	0.69	-1.3
2,015,247	-		DDA3937_RS08920	0.69	-0.6
2,015,248	+		DDA3937_RS08920	0.69	-1.4
2,015,249	-		DDA3937_RS08920	0.69	-0.2
2,015,249	-		DDA3937_RS08920	0.69	-0.4
2,015,249	-		DDA3937_RS08920	0.69	-1.9
2,015,249	-		DDA3937_RS08920	0.69	+0.3
2,015,261	+		DDA3937_RS08920	0.70	-0.9
2,015,261	+		DDA3937_RS08920	0.70	-2.6
2,015,261	+		DDA3937_RS08920	0.70	-0.2
2,015,261	+		DDA3937_RS08920	0.70	-0.4
2,015,262	-		DDA3937_RS08920	0.70	+0.9
2,015,262	-		DDA3937_RS08920	0.70	-0.4
2,015,262	-		DDA3937_RS08920	0.70	+0.1
2,015,262	-		DDA3937_RS08920	0.70	-0.8
2,015,262	-		DDA3937_RS08920	0.70	+0.2
2,015,262	-		DDA3937_RS08920	0.70	+0.2
2,015,262	-		DDA3937_RS08920	0.70	+0.1
2,015,262	-		DDA3937_RS08920	0.70	-1.0
2,015,286	-		DDA3937_RS08920	0.72	-0.0
2,015,286	-				+0.9
2,015,286	-		DDA3937_RS08920	0.72	-1.1
2,015,388	-		DDA3937_RS08920	0.80	+0.8
2,015,474	+		DDA3937_RS08920	0.87	+1.9
2,015,475	-		DDA3937_RS08920	0.87	+0.2
2,015,630	+				-1.3
2,015,652	-				-0.5
2,015,652	-				+0.8
2,015,652	-				+0.4
2,015,681	+				-0.8
2,015,681	+				-0.1
2,015,682	-				+0.9
2,015,682	-				+0.1
2,015,689	+				-0.3
2,015,689	+				+0.2
2,015,690	-				-1.0
2,015,690	-				-1.3
2,015,690	-				-1.9
2,015,695	-				-1.7
2,015,747	-				+0.7
2,015,805	+				-0.1
2,015,805	+				+0.9
2,015,806	-				+0.1
2,015,838	+				+0.2
2,015,842	+				-0.4
2,015,842	+				+0.4
2,015,842	+				-0.6
2,015,843	-				-0.4
2,015,843	-				-1.2
2,015,843	-				+0.8
2,015,843	-				-0.8
2,015,844	+				-0.4
2,015,844	+				-1.4
2,015,844	+				+1.0
2,015,844	+				+0.1
2,015,844	+				-0.2
2,015,844	+				+0.5
2,015,845	-				+0.5
2,015,845	-				-1.6
2,015,845	-				-0.3
2,015,845	-				-0.1
2,015,845	-				-0.5
2,015,864	+				+0.3
2,015,864	+				+1.5
2,015,905	+				-1.1
2,015,905	+				+1.5
2,015,926	+				+0.5
2,015,926	+				-0.9
2,015,927	-				-0.9
2,015,927	-				+0.6
2,015,927	-				+0.0
2,015,927	-				+0.0
2,015,927	-				-2.1
2,015,927	-				-0.4
2,015,927	-				+0.9
2,015,927	-				-0.3
2,015,945	+				+1.5
2,015,946	-				-2.8
2,015,975	+		DDA3937_RS08925	0.13	+0.4
2,016,007	+		DDA3937_RS08925	0.22	-0.4
2,016,007	+		DDA3937_RS08925	0.22	-3.5
2,016,007	+		DDA3937_RS08925	0.22	-1.8
2,016,008	-		DDA3937_RS08925	0.22	-0.4
2,016,008	-		DDA3937_RS08925	0.22	+0.7
2,016,010	+		DDA3937_RS08925	0.23	-0.1
2,016,010	+		DDA3937_RS08925	0.23	-0.1
2,016,011	-		DDA3937_RS08925	0.23	-0.0
2,016,011	-		DDA3937_RS08925	0.23	-1.3
2,016,011	-		DDA3937_RS08925	0.23	+2.6
2,016,012	+				-0.1
2,016,013	-		DDA3937_RS08925	0.24	+0.9
2,016,013	-		DDA3937_RS08925	0.24	+2.5
2,016,053	+		DDA3937_RS08925	0.36	+0.9
2,016,061	+		DDA3937_RS08925	0.38	-0.7
2,016,061	+		DDA3937_RS08925	0.38	+2.2
2,016,061	+		DDA3937_RS08925	0.38	+0.6
2,016,062	-		DDA3937_RS08925	0.38	+0.5
2,016,062	-		DDA3937_RS08925	0.38	-1.5
2,016,062	-		DDA3937_RS08925	0.38	+0.4
2,016,062	-		DDA3937_RS08925	0.38	-0.1
2,016,062	-		DDA3937_RS08925	0.38	+0.4
2,016,062	-		DDA3937_RS08925	0.38	+0.1
2,016,062	-		DDA3937_RS08925	0.38	-0.1
2,016,062	-		DDA3937_RS08925	0.38	+0.9
2,016,136	+		DDA3937_RS08925	0.60	+0.4
2,016,145	+		DDA3937_RS08925	0.63	-1.1
2,016,146	-		DDA3937_RS08925	0.63	-2.4
2,016,146	-		DDA3937_RS08925	0.63	-2.3
2,016,160	+		DDA3937_RS08925	0.67	+0.8
2,016,163	+		DDA3937_RS08925	0.68	+1.9
2,016,164	-		DDA3937_RS08925	0.68	+2.1
2,016,259	+				+0.8
2,016,259	+				-1.9
2,016,259	+				+0.2
2,016,260	-				-0.8
2,016,260	-				+0.3
2,016,260	-				+0.2
2,016,262	+				-0.2
2,016,262	+				-1.4
2,016,262	+				-1.7
2,016,262	+				-0.7
2,016,262	+				-0.2
2,016,262	+				-0.6
2,016,263	-				-1.0
2,016,263	-				-0.3
2,016,263	-				+0.7
2,016,263	-				-0.4
2,016,263	-				-0.2
2,016,271	+				-1.1
2,016,271	+				-0.7
2,016,276	+				+0.2
2,016,276	+				-0.4
2,016,440	+		DDA3937_RS08930	0.16	+0.2
2,016,440	+		DDA3937_RS08930	0.16	-0.1
2,016,441	-		DDA3937_RS08930	0.16	-0.1
2,016,441	-		DDA3937_RS08930	0.16	+0.5
2,016,441	-		DDA3937_RS08930	0.16	-1.1
2,016,441	-		DDA3937_RS08930	0.16	+1.6
2,016,441	-		DDA3937_RS08930	0.16	+1.0
2,016,444	+		DDA3937_RS08930	0.17	+0.6
2,016,444	+		DDA3937_RS08930	0.17	-2.1
2,016,444	+		DDA3937_RS08930	0.17	+0.9
2,016,444	+		DDA3937_RS08930	0.17	+1.8
2,016,444	+		DDA3937_RS08930	0.17	-0.2
2,016,444	+		DDA3937_RS08930	0.17	-0.7
2,016,445	-		DDA3937_RS08930	0.17	-0.9
2,016,445	-		DDA3937_RS08930	0.17	+1.2
2,016,522	+		DDA3937_RS08930	0.31	+1.0
2,016,523	-		DDA3937_RS08930	0.31	+0.1
2,016,523	-		DDA3937_RS08930	0.31	-0.8
2,016,523	-		DDA3937_RS08930	0.31	-1.3
2,016,541	-		DDA3937_RS08930	0.35	+1.4
2,016,578	+		DDA3937_RS08930	0.42	-1.4
2,016,578	+		DDA3937_RS08930	0.42	-0.0
2,016,714	+		DDA3937_RS08930	0.67	-0.5
2,016,715	-		DDA3937_RS08930	0.67	-1.1
2,016,715	-		DDA3937_RS08930	0.67	-0.4
2,016,715	-		DDA3937_RS08930	0.67	-1.9
2,016,716	+		DDA3937_RS08930	0.68	-0.7
2,016,716	+		DDA3937_RS08930	0.68	-1.4
2,016,716	+				+1.9
2,016,717	-		DDA3937_RS08930	0.68	-2.4
2,016,717	-		DDA3937_RS08930	0.68	+0.5
2,016,717	-		DDA3937_RS08930	0.68	+0.1
2,016,717	-		DDA3937_RS08930	0.68	-0.6
2,016,873	+				+0.9
2,016,873	+				-1.7
2,016,873	+				-1.7
2,016,873	+				+0.7
2,016,874	-				-1.8
2,016,874	-				-2.1
2,016,875	+				-1.7
2,016,875	+				-0.8
2,016,875	+				+0.4
2,016,875	+				+0.4
2,016,876	-				+0.3
2,016,876	-				-0.1
2,016,876	-				+0.1
2,016,876	-				-1.1
2,016,876	-				+0.4
2,016,876	-				+1.5
2,016,906	+				-0.0
2,016,906	+				-0.5
2,016,906	+				+0.4
2,016,906	+				-0.2
2,016,906	+				-0.7
2,016,906	+				+0.5
2,016,907	-				-0.2
2,016,907	-				-0.4
2,016,907	-				+1.1
2,016,914	+				+0.9
2,016,914	+				-1.9
2,016,915	-				-1.3
2,016,915	-				-0.1
2,016,915	-				+1.5
2,016,915	-				+1.0
2,016,920	-				-1.4
2,016,920	-				+0.1
2,016,990	+				+0.2
2,016,990	+				-0.7
2,016,990	+				-0.2
2,016,990	+				+0.3
2,016,990	+				-2.4
2,016,993	+				-0.1
2,016,993	+				-0.1
2,016,993	+				-1.1
2,016,993	+				-0.8
2,016,994	-				+0.7
2,016,994	-				+1.2
2,016,994	-				+0.6
2,016,994	-				+0.2
2,016,994	-				-0.7
2,016,994	-				-1.2
2,016,999	+				-0.8
2,016,999	+				+0.9
2,016,999	+				+1.3
2,017,004	+				-1.4
2,017,004	+				-0.5
2,017,004	+				-0.4
2,017,004	+				-2.1
2,017,004	+				-1.1
2,017,005	-				+0.9
2,017,005	-				+2.9
2,017,005	-				-0.9
2,017,005	-				-0.7
2,017,034	+				+0.7
2,017,034	+				-1.4
2,017,034	+				-2.0
2,017,142	+				-1.4
2,017,206	+				+0.3
2,017,207	-				+0.7
2,017,207	-				+0.1
2,017,207	-				-0.3
2,017,212	-				-0.7