Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08780

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,982,248	+				-0.0
1,982,248	+				-0.6
1,982,249	-				-0.9
1,982,249	-				-0.6
1,982,249	-				+0.6
1,982,249	-				-0.8
1,982,318	-				-2.0
1,982,326	+				-1.1
1,982,326	+				-1.2
1,982,326	+				-0.1
1,982,326	+				-1.9
1,982,326	+				+0.9
1,982,326	+				+0.2
1,982,326	+				-0.7
1,982,327	-				-1.4
1,982,327	-				+1.1
1,982,327	-				+0.1
1,982,327	-				-0.3
1,982,327	-				-1.0
1,982,327	-				-0.8
1,982,327	-				+0.4
1,982,327	-				+0.5
1,982,327	-				-0.7
1,982,327	-				+0.4
1,982,327	-				-0.4
1,982,336	+				+0.6
1,982,337	-				-1.9
1,982,503	+		DDA3937_RS08775	0.27	+0.0
1,982,503	+		DDA3937_RS08775	0.27	+0.8
1,982,504	-		DDA3937_RS08775	0.27	+0.5
1,982,504	-		DDA3937_RS08775	0.27	+1.5
1,982,504	-		DDA3937_RS08775	0.27	-0.2
1,982,504	-		DDA3937_RS08775	0.27	-0.8
1,982,504	-		DDA3937_RS08775	0.27	-0.7
1,982,504	-		DDA3937_RS08775	0.27	+0.2
1,982,706	+		DDA3937_RS08775	0.48	-1.5
1,982,706	+		DDA3937_RS08775	0.48	-0.2
1,982,706	+		DDA3937_RS08775	0.48	+0.6
1,982,706	+		DDA3937_RS08775	0.48	+0.1
1,982,706	+		DDA3937_RS08775	0.48	+0.4
1,982,707	-		DDA3937_RS08775	0.48	+0.9
1,982,707	-		DDA3937_RS08775	0.48	-1.8
1,982,787	+		DDA3937_RS08775	0.56	-0.5
1,982,787	+		DDA3937_RS08775	0.56	-0.5
1,982,860	+		DDA3937_RS08775	0.64	-0.3
1,982,861	-		DDA3937_RS08775	0.64	-0.3
1,982,895	+		DDA3937_RS08775	0.67	-0.1
1,982,938	+		DDA3937_RS08775	0.72	-1.0
1,983,023	+		DDA3937_RS08775	0.81	+0.9
1,983,023	+		DDA3937_RS08775	0.81	-1.2
1,983,215	-				-2.2
1,983,215	-				-1.4
1,983,227	+				-1.2
1,983,228	-				+1.2
1,983,231	+				-1.4
1,983,231	+				+1.5
1,983,231	+				-0.4
1,983,231	+				+0.3
1,983,231	+				-1.1
1,983,231	+				+0.5
1,983,232	-				-0.5
1,983,232	-				-1.1
1,983,232	-				-0.0
1,983,232	-				-0.8
1,983,232	-				+0.5
1,983,232	-				-0.7
1,983,232	-				+0.0
1,983,232	-				+0.4
1,983,232	-				+0.9
1,983,232	-				-1.9
1,983,232	-				+0.9
1,983,232	-				-1.4
1,983,256	+				-0.2
1,983,256	+				-0.5
1,983,256	+				-1.5
1,983,263	+				-0.4
1,983,264	-				-2.2
1,983,287	+				-1.1
1,983,332	+				-0.5
1,983,332	+				-0.7
1,983,332	+				+0.1
1,983,332	+				+0.2
1,983,332	+				-0.9
1,983,333	-				-1.5
1,983,333	-				-1.9
1,983,333	-				-0.1
1,983,333	-				-0.5
1,983,333	-				-1.4
1,983,334	+				+0.9
1,983,334	+				-1.7
1,983,335	-				-2.5
1,983,335	-				-0.5
1,983,335	-				-0.8
1,983,335	-				-0.2
1,983,400	+				+0.9
1,983,401	-				+0.4
1,983,439	+		DDA3937_RS08780	0.10	-0.7
1,983,439	+		DDA3937_RS08780	0.10	-1.2
1,983,439	+		DDA3937_RS08780	0.10	-0.3
1,983,439	+				+0.9
1,983,694	+		DDA3937_RS08780	0.24	+0.5
1,983,695	-		DDA3937_RS08780	0.24	+0.6
1,983,705	-		DDA3937_RS08780	0.25	-0.7
1,983,821	+		DDA3937_RS08780	0.31	+0.9
1,983,822	-		DDA3937_RS08780	0.31	+5.9
1,983,822	-		DDA3937_RS08780	0.31	-1.4
1,983,830	+		DDA3937_RS08780	0.31	-2.5
1,983,831	-		DDA3937_RS08780	0.31	+0.3
1,984,022	+		DDA3937_RS08780	0.42	+0.4
1,984,023	-		DDA3937_RS08780	0.42	-0.2
1,984,023	-		DDA3937_RS08780	0.42	-0.9
1,984,079	-		DDA3937_RS08780	0.45	-1.5
1,984,087	+		DDA3937_RS08780	0.45	-0.2
1,984,148	-		DDA3937_RS08780	0.48	-1.1
1,984,201	+		DDA3937_RS08780	0.51	-1.8
1,984,236	+		DDA3937_RS08780	0.53	+0.2
1,984,237	-		DDA3937_RS08780	0.53	+0.2
1,984,358	+		DDA3937_RS08780	0.60	-0.1
1,984,516	+		DDA3937_RS08780	0.68	+0.1
1,984,533	-		DDA3937_RS08780	0.69	+1.4
1,984,550	+		DDA3937_RS08780	0.70	-0.7
1,984,550	+		DDA3937_RS08780	0.70	+1.7
1,984,551	-		DDA3937_RS08780	0.70	+0.7
1,984,551	-		DDA3937_RS08780	0.70	+0.7
1,984,551	-		DDA3937_RS08780	0.70	-1.9
1,984,551	-		DDA3937_RS08780	0.70	+0.1
1,984,703	+		DDA3937_RS08780	0.78	+0.9
1,984,704	-		DDA3937_RS08780	0.78	+0.7
1,984,704	-		DDA3937_RS08780	0.78	-1.4
1,984,704	-		DDA3937_RS08780	0.78	-0.1
1,984,763	+		DDA3937_RS08780	0.81	-1.4
1,984,809	-		DDA3937_RS08780	0.84	+0.3
1,984,883	+		DDA3937_RS08780	0.88	-0.8
1,984,883	+		DDA3937_RS08780	0.88	-0.2
1,985,042	+				+0.1
1,985,042	+				-0.7
1,985,103	-				-1.3
1,985,184	+				-1.0
1,985,184	+				-0.5
1,985,184	+				-0.6
1,985,184	+				+0.4
1,985,184	+				-1.8
1,985,185	-				-0.9
1,985,185	-				+0.8
1,985,185	-				-0.1
1,985,185	-				+0.4
1,985,185	-				+0.2
1,985,187	-				-1.3
1,985,309	+				+1.1
1,985,340	-				-0.6
1,985,352	+				-0.1
1,985,352	+				+3.5
1,985,363	+				-0.7
1,985,363	+				+0.9
1,985,363	+				+0.2
1,985,363	+				-0.2
1,985,363	+				-1.4
1,985,363	+				+2.1
1,985,363	+				+1.4
1,985,363	+				-1.1
1,985,363	+				+0.1
1,985,363	+				-0.8
1,985,364	-				-0.7
1,985,364	-				-1.1
1,985,364	-				+4.8
1,985,379	+				-1.0
1,985,379	+				+4.2
1,985,379	+				-0.4
1,985,380	-				-0.7
1,985,380	-				-2.1
1,985,413	+				+0.2
1,985,414	-				+0.2
1,985,416	+				+1.3
1,985,535	+				+0.9
1,985,535	+		DDA3937_RS08785	0.13	+0.5
1,985,536	-		DDA3937_RS08785	0.13	+0.2
1,985,536	-				-1.1
1,985,536	-		DDA3937_RS08785	0.13	+0.1
1,985,536	-		DDA3937_RS08785	0.13	-0.3
1,985,591	+		DDA3937_RS08785	0.17	-0.7
1,985,820	+		DDA3937_RS08785	0.35	+0.9
1,985,826	+		DDA3937_RS08785	0.36	-0.8
1,985,827	-		DDA3937_RS08785	0.36	-2.4
1,985,827	-		DDA3937_RS08785	0.36	-0.3
1,985,881	-		DDA3937_RS08785	0.40	-1.0
1,985,925	-		DDA3937_RS08785	0.43	+0.9
1,985,925	-		DDA3937_RS08785	0.43	+1.2
1,985,960	+		DDA3937_RS08785	0.46	-0.4
1,985,961	-		DDA3937_RS08785	0.46	-1.9
1,985,961	-		DDA3937_RS08785	0.46	-0.4
1,985,961	-		DDA3937_RS08785	0.46	-0.9
1,986,078	-		DDA3937_RS08785	0.55	+2.1
1,986,090	+		DDA3937_RS08785	0.56	+0.9
1,986,090	+		DDA3937_RS08785	0.56	-0.1
1,986,090	+		DDA3937_RS08785	0.56	-0.3
1,986,091	-		DDA3937_RS08785	0.56	+0.9