Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08745

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,972,107	+				-1.0
1,972,108	-				-0.8
1,972,221	-				-0.1
1,972,221	-				-0.8
1,972,221	-				+1.1
1,972,221	-				+0.0
1,972,221	-				+0.6
1,972,293	+		DDA3937_RS08740	0.14	-0.7
1,972,294	-		DDA3937_RS08740	0.14	+0.2
1,972,298	+		DDA3937_RS08740	0.15	-0.1
1,972,298	+		DDA3937_RS08740	0.15	+0.2
1,972,298	+		DDA3937_RS08740	0.15	-0.1
1,972,298	+		DDA3937_RS08740	0.15	-0.3
1,972,298	+		DDA3937_RS08740	0.15	+0.6
1,972,298	+		DDA3937_RS08740	0.15	+2.5
1,972,298	+		DDA3937_RS08740	0.15	-1.1
1,972,299	-		DDA3937_RS08740	0.15	+0.4
1,972,299	-		DDA3937_RS08740	0.15	-2.3
1,972,299	-		DDA3937_RS08740	0.15	-0.7
1,972,299	-		DDA3937_RS08740	0.15	-1.0
1,972,457	+		DDA3937_RS08740	0.38	-0.5
1,972,457	+		DDA3937_RS08740	0.38	-0.4
1,972,457	+		DDA3937_RS08740	0.38	+0.2
1,972,457	+		DDA3937_RS08740	0.38	+0.3
1,972,458	-		DDA3937_RS08740	0.38	+0.6
1,972,458	-		DDA3937_RS08740	0.38	-1.2
1,972,458	-		DDA3937_RS08740	0.38	+0.3
1,972,458	-		DDA3937_RS08740	0.38	-2.9
1,972,458	-		DDA3937_RS08740	0.38	+0.8
1,972,458	-		DDA3937_RS08740	0.38	-0.5
1,972,458	-		DDA3937_RS08740	0.38	+0.2
1,972,665	+		DDA3937_RS08740	0.68	-2.5
1,972,666	-		DDA3937_RS08740	0.68	+0.4
1,972,817	+				+0.2
1,972,818	-				-0.3
1,972,878	+				-0.0
1,972,878	+				-0.1
1,972,878	+				+0.1
1,972,879	-				+0.6
1,972,879	-				+0.1
1,972,879	-				-0.5
1,972,879	-				-0.6
1,972,879	-				-0.6
1,972,900	+				+2.7
1,972,900	+				-1.3
1,972,901	-				-0.0
1,972,901	-				+2.5
1,972,902	+				-1.3
1,972,902	+				-1.9
1,972,902	+				+2.6
1,972,902	+				+1.5
1,972,902	+				+0.3
1,972,902	+				+1.1
1,972,902	+				-0.7
1,972,902	+				-1.6
1,972,902	+				-0.6
1,972,902	+				+2.8
1,972,902	+				-0.4
1,972,902	+				+0.3
1,972,902	+				-0.2
1,972,902	+				-1.7
1,972,902	+				-0.5
1,972,902	+				-0.1
1,972,902	+				-1.2
1,972,903	-				+0.2
1,972,903	-				-0.0
1,972,903	-				-1.4
1,972,903	-				-0.3
1,972,903	-				-1.1
1,972,903	-				-0.8
1,972,903	-				-0.2
1,972,903	-				+0.3
1,972,903	-				-2.3
1,972,903	-				+0.9
1,972,903	-				-1.5
1,972,903	-				-1.2
1,972,915	+				-1.2
1,972,915	+				+1.1
1,972,915	+				+1.1
1,972,916	-				-0.7
1,972,916	-				-1.3
1,972,916	-				+0.4
1,972,926	+				-0.9
1,972,952	-				+0.8
1,972,952	-				-1.0
1,972,982	+				-1.1
1,972,983	-				+0.1
1,972,991	+				-0.7
1,972,991	+				-2.7
1,972,991	+				-0.4
1,972,995	+				-0.1
1,972,995	+				+0.9
1,972,996	-				+0.3
1,972,996	-				+0.6
1,973,008	+				+0.3
1,973,008	+				-0.1
1,973,163	+		DDA3937_RS08745	0.14	-0.0
1,973,163	+		DDA3937_RS08745	0.14	-2.4
1,973,331	+		DDA3937_RS08745	0.35	+0.0
1,973,331	+		DDA3937_RS08745	0.35	+3.8
1,973,483	-		DDA3937_RS08745	0.55	-0.9
1,973,483	-		DDA3937_RS08745	0.55	-1.7
1,973,483	-		DDA3937_RS08745	0.55	-0.7
1,973,577	-		DDA3937_RS08745	0.67	-0.5
1,973,690	+		DDA3937_RS08745	0.81	-0.5
1,973,858	-				-0.7
1,973,873	+				-0.1
1,973,875	+				+0.2
1,973,875	+				-1.1
1,973,876	-				-0.4
1,973,876	-				-1.4
1,973,876	-				+0.2
1,973,876	-				+0.9
1,973,913	+				-0.2
1,973,914	-				-0.9
1,973,914	-				+0.3
1,973,914	-				-0.6
1,973,946	+				-0.3
1,973,946	+				+0.2
1,973,946	+				-0.3
1,973,946	+				-1.4
1,973,946	+				-0.8
1,973,946	+				-2.3
1,973,947	-				+0.7
1,973,947	-				+3.5
1,974,157	+				+1.5
1,974,158	-				+2.9
1,974,158	-				-0.3
1,974,162	+				+0.1
1,974,162	+				-1.5
1,974,211	+				+1.5
1,974,211	+				-2.3
1,974,211	+				-3.5
1,974,216	+				-1.5
1,974,216	+				-0.8
1,974,216	+				+0.0
1,974,217	-				-1.7
1,974,217	-				+0.1
1,974,217	-				-1.8
1,974,217	-				+0.4
1,974,229	+				-0.7
1,974,229	+				+0.0
1,974,229	+				-0.1
1,974,229	+				+1.3
1,974,230	-				-1.0
1,974,230	-				-2.0
1,974,234	+				+0.3
1,974,234	+				+0.3
1,974,234	+				+1.9
1,974,234	+				-0.2
1,974,235	-				-0.3
1,974,235	-				+0.0
1,974,235	-				+0.2
1,974,235	-				+0.7
1,974,422	+		DDA3937_RS08750	0.13	+0.8
1,974,422	+		DDA3937_RS08750	0.13	+0.5
1,974,422	+		DDA3937_RS08750	0.13	-0.3
1,974,422	+		DDA3937_RS08750	0.13	-0.2
1,974,423	-		DDA3937_RS08750	0.13	+1.9
1,974,423	-		DDA3937_RS08750	0.13	-2.0
1,974,449	+		DDA3937_RS08750	0.15	-0.9
1,974,461	+		DDA3937_RS08750	0.15	-0.6
1,974,461	+		DDA3937_RS08750	0.15	+0.5
1,974,461	+		DDA3937_RS08750	0.15	-0.7
1,974,461	+		DDA3937_RS08750	0.15	+4.2
1,974,461	+		DDA3937_RS08750	0.15	-0.5
1,974,462	-		DDA3937_RS08750	0.16	+0.4
1,974,552	-		DDA3937_RS08750	0.22	-0.2
1,974,576	-		DDA3937_RS08750	0.24	+1.3
1,974,626	+		DDA3937_RS08750	0.28	-1.7
1,974,626	+		DDA3937_RS08750	0.28	-1.3
1,974,626	+		DDA3937_RS08750	0.28	-0.7
1,974,626	+		DDA3937_RS08750	0.28	-0.7
1,974,626	+		DDA3937_RS08750	0.28	+1.2
1,974,627	-		DDA3937_RS08750	0.28	-0.4
1,974,627	-		DDA3937_RS08750	0.28	-1.9
1,974,627	-		DDA3937_RS08750	0.28	+0.0
1,974,627	-		DDA3937_RS08750	0.28	+1.5
1,974,627	-				-0.7
1,974,627	-		DDA3937_RS08750	0.28	+0.1
1,974,627	-		DDA3937_RS08750	0.28	+1.5
1,974,627	-		DDA3937_RS08750	0.28	-1.7
1,974,627	-		DDA3937_RS08750	0.28	-0.4
1,974,627	-		DDA3937_RS08750	0.28	+0.9
1,974,627	-		DDA3937_RS08750	0.28	-0.3
1,974,627	-		DDA3937_RS08750	0.28	-0.2
1,974,681	-		DDA3937_RS08750	0.32	+1.0
1,974,701	-		DDA3937_RS08750	0.33	-0.4
1,974,719	+		DDA3937_RS08750	0.35	+0.9
1,974,719	+		DDA3937_RS08750	0.35	+0.1
1,974,720	-		DDA3937_RS08750	0.35	+0.6