Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08260

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,866,599	+		DDA3937_RS08250	0.79	-2.1
1,866,599	+		DDA3937_RS08250	0.79	-1.1
1,866,599	+		DDA3937_RS08250	0.79	+0.1
1,866,599	+		DDA3937_RS08250	0.79	-0.2
1,866,600	-		DDA3937_RS08250	0.79	-1.1
1,866,600	-		DDA3937_RS08250	0.79	-0.1
1,866,600	-		DDA3937_RS08250	0.79	-0.1
1,866,600	-		DDA3937_RS08250	0.79	-2.1
1,866,600	-		DDA3937_RS08250	0.79	-0.3
1,866,647	+		DDA3937_RS08250	0.86	-0.5
1,866,647	+		DDA3937_RS08250	0.86	+2.3
1,866,647	+		DDA3937_RS08250	0.86	+0.2
1,866,647	+				+3.5
1,866,648	-		DDA3937_RS08250	0.86	+0.7
1,866,648	-		DDA3937_RS08250	0.86	+0.9
1,866,648	-		DDA3937_RS08250	0.86	+1.3
1,866,648	-		DDA3937_RS08250	0.86	+1.1
1,866,648	-		DDA3937_RS08250	0.86	+0.4
1,866,648	-		DDA3937_RS08250	0.86	+2.3
1,866,668	+		DDA3937_RS08250	0.89	+0.3
1,866,734	+				+0.1
1,866,734	+				-2.1
1,866,734	+				+0.2
1,866,734	+				-0.5
1,866,734	+				-1.1
1,866,735	-				-0.7
1,866,735	-				-0.9
1,866,735	-				-0.5
1,866,735	-				+0.9
1,866,743	+				-0.8
1,866,743	+				-0.1
1,866,751	-				-1.7
1,866,751	-				-1.7
1,866,764	+				-0.6
1,866,768	+				-1.4
1,866,768	+				+0.5
1,866,768	+				-1.4
1,866,769	-				+0.4
1,866,848	+		DDA3937_RS08255	0.13	-1.4
1,866,849	-		DDA3937_RS08255	0.13	-0.1
1,866,930	-		DDA3937_RS08255	0.23	+0.3
1,866,969	+		DDA3937_RS08255	0.28	+0.2
1,867,000	+		DDA3937_RS08255	0.32	-0.7
1,867,001	-		DDA3937_RS08255	0.32	-0.2
1,867,001	-		DDA3937_RS08255	0.32	-0.8
1,867,001	-		DDA3937_RS08255	0.32	+1.2
1,867,001	-		DDA3937_RS08255	0.32	+0.3
1,867,032	+		DDA3937_RS08255	0.36	-1.9
1,867,033	-		DDA3937_RS08255	0.37	+0.3
1,867,033	-		DDA3937_RS08255	0.37	-0.7
1,867,033	-		DDA3937_RS08255	0.37	-1.7
1,867,068	+		DDA3937_RS08255	0.41	-0.7
1,867,068	+		DDA3937_RS08255	0.41	+0.2
1,867,072	+		DDA3937_RS08255	0.42	+1.3
1,867,072	+		DDA3937_RS08255	0.42	+0.6
1,867,073	-		DDA3937_RS08255	0.42	+2.6
1,867,073	-		DDA3937_RS08255	0.42	-1.1
1,867,073	-		DDA3937_RS08255	0.42	+0.9
1,867,073	-		DDA3937_RS08255	0.42	-1.0
1,867,073	-		DDA3937_RS08255	0.42	+0.6
1,867,073	-		DDA3937_RS08255	0.42	-3.7
1,867,084	+		DDA3937_RS08255	0.43	-0.5
1,867,085	-		DDA3937_RS08255	0.43	-0.2
1,867,085	-		DDA3937_RS08255	0.43	+0.1
1,867,085	-		DDA3937_RS08255	0.43	+0.2
1,867,135	+		DDA3937_RS08255	0.50	+0.7
1,867,135	+		DDA3937_RS08255	0.50	+0.8
1,867,136	-		DDA3937_RS08255	0.50	-0.5
1,867,166	-		DDA3937_RS08255	0.54	+0.6
1,867,260	+		DDA3937_RS08255	0.66	-0.0
1,867,260	+		DDA3937_RS08255	0.66	-0.2
1,867,270	+		DDA3937_RS08255	0.67	-1.1
1,867,270	+		DDA3937_RS08255	0.67	+0.5
1,867,270	+		DDA3937_RS08255	0.67	+0.3
1,867,271	-		DDA3937_RS08255	0.67	-1.4
1,867,271	-		DDA3937_RS08255	0.67	-1.2
1,867,297	+		DDA3937_RS08255	0.71	-0.2
1,867,297	+		DDA3937_RS08255	0.71	+0.3
1,867,297	+		DDA3937_RS08255	0.71	-0.5
1,867,298	-		DDA3937_RS08255	0.71	+1.2
1,867,298	-				-0.4
1,867,298	-		DDA3937_RS08255	0.71	-2.2
1,867,370	-		DDA3937_RS08255	0.80	-0.2
1,867,370	-		DDA3937_RS08255	0.80	+2.6
1,867,372	+		DDA3937_RS08255	0.81	+1.1
1,867,372	+		DDA3937_RS08255	0.81	-1.7
1,867,372	+		DDA3937_RS08255	0.81	+0.3
1,867,372	+		DDA3937_RS08255	0.81	+1.5
1,867,372	+		DDA3937_RS08255	0.81	-1.0
1,867,372	+		DDA3937_RS08255	0.81	-1.4
1,867,372	+		DDA3937_RS08255	0.81	+0.7
1,867,372	+		DDA3937_RS08255	0.81	+0.4
1,867,372	+		DDA3937_RS08255	0.81	-0.2
1,867,372	+		DDA3937_RS08255	0.81	+0.4
1,867,373	-		DDA3937_RS08255	0.81	-1.0
1,867,373	-		DDA3937_RS08255	0.81	+2.5
1,867,373	-		DDA3937_RS08255	0.81	-0.1
1,867,373	-		DDA3937_RS08255	0.81	+0.9
1,867,373	-		DDA3937_RS08255	0.81	+1.1
1,867,373	-		DDA3937_RS08255	0.81	+0.3
1,867,373	-		DDA3937_RS08255	0.81	+0.4
1,867,386	+		DDA3937_RS08255	0.82	-1.4
1,867,387	-		DDA3937_RS08255	0.82	+0.1
1,867,408	-		DDA3937_RS08255	0.85	-0.5
1,867,408	-		DDA3937_RS08255	0.85	+5.5
1,867,420	+		DDA3937_RS08255	0.87	+0.5
1,867,420	+		DDA3937_RS08255	0.87	-1.1
1,867,420	+		DDA3937_RS08255	0.87	-0.1
1,867,420	+		DDA3937_RS08255	0.87	+0.1
1,867,420	+		DDA3937_RS08255	0.87	-0.1
1,867,421	-		DDA3937_RS08255	0.87	-0.6
1,867,422	+		DDA3937_RS08255	0.87	+0.6
1,867,422	+				+0.9
1,867,487	+				+0.9
1,867,488	-				+0.5
1,867,538	+				-0.7
1,867,538	+				+1.5
1,867,566	+				-0.3
1,867,566	+				-1.4
1,867,566	+				+0.8
1,867,682	+		DDA3937_RS08260	0.21	+0.5
1,867,682	+		DDA3937_RS08260	0.21	+2.4
1,867,718	+		DDA3937_RS08260	0.26	-0.4
1,867,734	-		DDA3937_RS08260	0.29	+1.4
1,867,750	+		DDA3937_RS08260	0.31	+0.4
1,867,751	-		DDA3937_RS08260	0.31	+0.0
1,867,801	+				+0.9
1,867,801	+		DDA3937_RS08260	0.38	+1.0
1,867,801	+		DDA3937_RS08260	0.38	+0.1
1,867,864	+		DDA3937_RS08260	0.46	+0.5
1,867,865	-		DDA3937_RS08260	0.47	-0.2
1,867,865	-		DDA3937_RS08260	0.47	-0.7
1,867,869	-		DDA3937_RS08260	0.47	-1.9
1,867,869	-		DDA3937_RS08260	0.47	-0.7
1,867,923	+				-0.1
1,868,054	-		DDA3937_RS08260	0.73	+1.1
1,868,102	+		DDA3937_RS08260	0.79	+0.4
1,868,150	+		DDA3937_RS08260	0.86	-2.7
1,868,243	-				+0.9
1,868,243	-				-0.8
1,868,243	-				-0.2
1,868,243	-				+0.7
1,868,300	+				-0.1
1,868,300	+				+0.9
1,868,301	-				-0.7
1,868,301	-				+1.6
1,868,333	+				-0.2
1,868,333	+				-0.1
1,868,334	-				+0.1
1,868,334	-				-0.6
1,868,354	-				-0.2
1,868,354	-				+0.7
1,868,354	-				-0.9
1,868,385	-				-1.3
1,868,421	+				-1.1
1,868,422	-				-1.0
1,868,422	-				-0.6
1,868,461	-				-0.9
1,868,520	+				-0.0
1,868,523	+				-2.3
1,868,543	+				-0.3
1,868,544	-				+0.6
1,868,547	+				+1.9
1,868,547	+				-1.1
1,868,547	+				+1.2
1,868,556	+				+0.5
1,868,564	-				+0.9
1,868,565	+				-0.8
1,868,565	+				-0.4
1,868,565	+				-0.3
1,868,565	+				-2.4
1,868,565	+				+0.7
1,868,565	+				+0.9
1,868,565	+				-1.1
1,868,565	+				-1.0
1,868,566	-				+0.4
1,868,566	-				+0.1
1,868,566	-				-0.6
1,868,566	-				-1.7
1,868,566	-				-0.1
1,868,566	-				-0.6
1,868,606	-				+0.3
1,868,610	+				-0.8
1,868,610	+				+0.4
1,868,610	+				-1.3
1,868,611	-				-1.2
1,868,611	-				+0.7
1,868,627	-				+1.6
1,868,640	-		DDA3937_RS08265	0.11	-2.7
1,868,640	-		DDA3937_RS08265	0.11	-0.5
1,868,640	-		DDA3937_RS08265	0.11	-0.2
1,868,663	+		DDA3937_RS08265	0.14	-1.4
1,868,663	+		DDA3937_RS08265	0.14	+0.2
1,868,663	+		DDA3937_RS08265	0.14	+0.4
1,868,663	+		DDA3937_RS08265	0.14	-0.9
1,868,663	+		DDA3937_RS08265	0.14	-0.6
1,868,663	+		DDA3937_RS08265	0.14	+0.3
1,868,663	+		DDA3937_RS08265	0.14	+0.9
1,868,663	+		DDA3937_RS08265	0.14	-0.1
1,868,663	+		DDA3937_RS08265	0.14	-0.8
1,868,663	+		DDA3937_RS08265	0.14	-1.3
1,868,663	+		DDA3937_RS08265	0.14	+0.8
1,868,663	+		DDA3937_RS08265	0.14	-0.4
1,868,663	+		DDA3937_RS08265	0.14	-0.1
1,868,663	+		DDA3937_RS08265	0.14	-0.9
1,868,663	+		DDA3937_RS08265	0.14	+0.8
1,868,664	-		DDA3937_RS08265	0.14	-1.0
1,868,664	-		DDA3937_RS08265	0.14	+0.9
1,868,664	-		DDA3937_RS08265	0.14	-0.8
1,868,664	-		DDA3937_RS08265	0.14	-0.1
1,868,664	-		DDA3937_RS08265	0.14	-0.1
1,868,664	-		DDA3937_RS08265	0.14	-0.4
1,868,664	-		DDA3937_RS08265	0.14	-1.3
1,868,664	-		DDA3937_RS08265	0.14	-0.2
1,868,664	-		DDA3937_RS08265	0.14	-1.9
1,868,664	-		DDA3937_RS08265	0.14	-0.5
1,868,668	-		DDA3937_RS08265	0.15	+0.5
1,868,668	-		DDA3937_RS08265	0.15	-0.1
1,868,668	-		DDA3937_RS08265	0.15	-1.4
1,868,668	-		DDA3937_RS08265	0.15	+0.6
1,868,707	+				+0.9
1,868,717	-		DDA3937_RS08265	0.21	+1.5
1,868,738	+				-0.9
1,868,761	+		DDA3937_RS08265	0.27	+0.6
1,868,762	-		DDA3937_RS08265	0.27	-1.9
1,868,762	-		DDA3937_RS08265	0.27	-2.4
1,868,794	+		DDA3937_RS08265	0.31	-1.3
1,868,794	+		DDA3937_RS08265	0.31	+0.3
1,868,795	-		DDA3937_RS08265	0.31	-0.7
1,868,795	-		DDA3937_RS08265	0.31	+0.0
1,868,875	+		DDA3937_RS08265	0.42	-0.4
1,868,875	+		DDA3937_RS08265	0.42	-1.1
1,868,875	+		DDA3937_RS08265	0.42	-0.4
1,868,875	+		DDA3937_RS08265	0.42	+3.1
1,868,936	-		DDA3937_RS08265	0.49	+0.9
1,868,940	+		DDA3937_RS08265	0.50	-0.4
1,868,940	+		DDA3937_RS08265	0.50	-1.2
1,868,940	+		DDA3937_RS08265	0.50	-2.3
1,868,941	-		DDA3937_RS08265	0.50	-0.8
1,868,941	-		DDA3937_RS08265	0.50	+0.9
1,868,959	+		DDA3937_RS08265	0.52	-0.3
1,868,963	+				+1.5
1,868,963	+		DDA3937_RS08265	0.53	+1.1
1,868,963	+		DDA3937_RS08265	0.53	-1.4
1,868,963	+		DDA3937_RS08265	0.53	-0.5
1,868,963	+		DDA3937_RS08265	0.53	-0.7
1,868,964	-		DDA3937_RS08265	0.53	-0.7
1,869,064	+		DDA3937_RS08265	0.66	-0.7
1,869,111	+		DDA3937_RS08265	0.72	-0.5
1,869,184	-		DDA3937_RS08265	0.82	-0.4
1,869,210	+		DDA3937_RS08265	0.85	-0.9
1,869,211	-				-0.7
1,869,211	-		DDA3937_RS08265	0.85	-0.5
1,869,218	-		DDA3937_RS08265	0.86	-2.1
1,869,246	+		DDA3937_RS08265	0.90	-1.7
1,869,246	+		DDA3937_RS08265	0.90	-0.9
1,869,247	-		DDA3937_RS08265	0.90	-0.9