Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07275

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,640,668	+		DDA3937_RS07270	0.54	+0.5
1,640,668	+		DDA3937_RS07270	0.54	+1.7
1,640,669	-		DDA3937_RS07270	0.54	-2.0
1,640,669	-		DDA3937_RS07270	0.54	-0.4
1,640,753	+		DDA3937_RS07270	0.59	+1.5
1,640,754	-		DDA3937_RS07270	0.59	-1.3
1,640,868	+		DDA3937_RS07270	0.66	-1.4
1,640,868	+		DDA3937_RS07270	0.66	+0.3
1,640,868	+		DDA3937_RS07270	0.66	+0.3
1,640,928	+				+0.3
1,640,929	-		DDA3937_RS07270	0.69	+0.2
1,640,929	-		DDA3937_RS07270	0.69	+4.3
1,640,929	-		DDA3937_RS07270	0.69	-1.3
1,641,079	+		DDA3937_RS07270	0.78	-0.1
1,641,080	-		DDA3937_RS07270	0.78	-0.6
1,641,140	+		DDA3937_RS07270	0.82	-0.0
1,641,140	+		DDA3937_RS07270	0.82	-2.7
1,641,140	+		DDA3937_RS07270	0.82	-0.9
1,641,140	+		DDA3937_RS07270	0.82	-0.9
1,641,141	-		DDA3937_RS07270	0.82	+0.3
1,641,141	-		DDA3937_RS07270	0.82	-0.4
1,641,141	-		DDA3937_RS07270	0.82	-0.3
1,641,141	-		DDA3937_RS07270	0.82	-1.3
1,641,141	-		DDA3937_RS07270	0.82	-0.5
1,641,212	+		DDA3937_RS07270	0.86	-0.2
1,641,213	-		DDA3937_RS07270	0.86	-0.7
1,641,252	+		DDA3937_RS07270	0.89	+1.0
1,641,252	+		DDA3937_RS07270	0.89	-0.3
1,641,265	-		DDA3937_RS07270	0.89	-0.0
1,641,273	+		DDA3937_RS07270	0.90	-1.0
1,641,273	+		DDA3937_RS07270	0.90	+0.1
1,641,273	+		DDA3937_RS07270	0.90	-0.2
1,641,274	-		DDA3937_RS07270	0.90	-0.9
1,641,274	-		DDA3937_RS07270	0.90	+0.3
1,641,499	+				+0.5
1,641,499	+				+0.5
1,641,500	-				-0.5
1,641,500	-				+0.5
1,641,500	-				-0.6
1,641,500	-				-1.8
1,641,517	-				-0.0
1,641,553	-				-0.5
1,641,565	+				-1.0
1,641,565	+				-1.8
1,641,566	-				+0.5
1,641,570	-				+0.8
1,641,570	-				+0.1
1,641,570	-				-2.6
1,641,570	-				-1.6
1,641,570	-				-0.0
1,641,586	-				+0.2
1,641,586	-				+0.3
1,641,588	+				+0.2
1,641,588	+				-2.3
1,641,588	+				-0.8
1,641,588	+				-1.2
1,641,589	-				-0.8
1,641,603	+				-2.0
1,641,603	+				+0.6
1,641,603	+				-0.7
1,641,603	+				+0.3
1,641,603	+				-1.8
1,641,603	+				+1.0
1,641,604	-				+0.7
1,641,604	-				-2.1
1,641,604	-				+6.0
1,641,604	-				-0.8
1,641,604	-				-0.3
1,641,604	-				-1.2
1,641,604	-				+0.4
1,641,604	-				-0.5
1,641,604	-				-1.1
1,641,604	-				-0.8
1,641,604	-				+0.8
1,641,605	+				+1.6
1,641,605	+				-0.7
1,641,606	-				+0.0
1,641,606	-				+0.2
1,641,635	-				-0.8
1,641,645	-				-1.1
1,641,645	-				-0.6
1,641,645	-				-0.9
1,641,647	+				-0.3
1,641,648	-				+0.2
1,641,648	-				-1.7
1,641,651	-				+0.6
1,641,676	-				-0.1
1,641,703	+				-1.8
1,641,704	-				-1.2
1,641,705	+				-2.0
1,641,732	+				-0.5
1,641,732	+				+1.2
1,641,733	-				+0.4
1,641,733	-				-0.6
1,641,733	-				-1.6
1,641,766	+		DDA3937_RS07275	0.13	-0.4
1,641,766	+		DDA3937_RS07275	0.13	-0.2
1,641,766	+		DDA3937_RS07275	0.13	-0.8
1,641,766	+		DDA3937_RS07275	0.13	-1.6
1,641,766	+		DDA3937_RS07275	0.13	+0.5
1,641,766	+		DDA3937_RS07275	0.13	-1.7
1,641,766	+		DDA3937_RS07275	0.13	+0.7
1,641,767	-		DDA3937_RS07275	0.13	-0.6
1,641,767	-		DDA3937_RS07275	0.13	+0.2
1,641,767	-		DDA3937_RS07275	0.13	+1.3
1,641,767	-		DDA3937_RS07275	0.13	-0.7
1,641,823	+		DDA3937_RS07275	0.20	+0.4
1,641,824	-		DDA3937_RS07275	0.20	-1.0
1,641,829	-		DDA3937_RS07275	0.21	-0.5
1,641,859	+		DDA3937_RS07275	0.24	+2.3
1,641,859	+		DDA3937_RS07275	0.24	-0.6
1,641,859	+		DDA3937_RS07275	0.24	-0.7
1,641,860	-		DDA3937_RS07275	0.24	-0.9
1,641,860	-		DDA3937_RS07275	0.24	-2.2
1,641,860	-		DDA3937_RS07275	0.24	-1.2
1,641,861	+		DDA3937_RS07275	0.25	-1.5
1,641,862	-		DDA3937_RS07275	0.25	-0.0
1,641,862	-		DDA3937_RS07275	0.25	-2.5
1,641,862	-		DDA3937_RS07275	0.25	+0.5
1,641,919	+		DDA3937_RS07275	0.32	-0.7
1,641,919	+		DDA3937_RS07275	0.32	+0.8
1,641,919	+		DDA3937_RS07275	0.32	-0.1
1,641,920	-		DDA3937_RS07275	0.32	-1.3
1,641,983	+		DDA3937_RS07275	0.40	+0.5
1,642,021	+		DDA3937_RS07275	0.45	-1.4
1,642,021	+		DDA3937_RS07275	0.45	-1.3
1,642,021	+		DDA3937_RS07275	0.45	+0.5
1,642,021	+		DDA3937_RS07275	0.45	-0.3
1,642,022	-		DDA3937_RS07275	0.45	-1.0
1,642,103	+		DDA3937_RS07275	0.55	-2.1
1,642,125	+		DDA3937_RS07275	0.58	-1.7
1,642,125	+		DDA3937_RS07275	0.58	-0.7
1,642,125	+		DDA3937_RS07275	0.58	-0.6
1,642,125	+		DDA3937_RS07275	0.58	-1.5
1,642,125	+		DDA3937_RS07275	0.58	+0.0
1,642,148	-		DDA3937_RS07275	0.61	+0.4
1,642,159	+		DDA3937_RS07275	0.62	-0.8
1,642,160	-		DDA3937_RS07275	0.62	-0.0
1,642,160	-		DDA3937_RS07275	0.62	+0.5
1,642,160	-		DDA3937_RS07275	0.62	+1.0
1,642,160	-		DDA3937_RS07275	0.62	-1.6
1,642,160	-		DDA3937_RS07275	0.62	-1.5
1,642,181	-		DDA3937_RS07275	0.65	-0.8
1,642,241	-		DDA3937_RS07275	0.72	-0.2
1,642,251	-		DDA3937_RS07275	0.73	+0.3
1,642,357	+		DDA3937_RS07275	0.87	+0.4
1,642,381	+		DDA3937_RS07275	0.90	-0.9
1,642,421	+				-0.6
1,642,441	+				-2.0
1,642,468	+				-2.6
1,642,479	+				-1.4
1,642,479	+				-0.2
1,642,479	+				+0.1
1,642,480	-				-0.5
1,642,483	-				+0.1
1,642,489	-				-0.8
1,642,489	-				+2.0
1,642,491	+				-0.6
1,642,491	+				-0.8
1,642,491	+				+4.8
1,642,491	+				+1.0
1,642,492	-				-1.0
1,642,492	-				+1.3
1,642,492	-				-0.1
1,642,545	-				+1.6
1,642,584	+				-1.1
1,642,585	-				-0.0
1,642,616	+				-1.8
1,642,647	-				-0.5
1,642,664	-				+0.1
1,642,672	+				-0.2
1,642,673	-				-1.7
1,642,675	+				-0.1
1,642,675	+				+0.5
1,642,676	-				-0.9
1,642,689	-				-0.5
1,642,715	-		DDA3937_RS07280	0.11	-0.6
1,642,805	+		DDA3937_RS07280	0.16	+1.4
1,642,806	-		DDA3937_RS07280	0.16	-0.6
1,642,806	-		DDA3937_RS07280	0.16	-0.2
1,642,807	+		DDA3937_RS07280	0.17	-1.2
1,642,808	-		DDA3937_RS07280	0.17	+0.2
1,642,818	+		DDA3937_RS07280	0.17	-1.5
1,642,838	-		DDA3937_RS07280	0.18	+0.1
1,642,881	+		DDA3937_RS07280	0.21	-0.6
1,642,881	+		DDA3937_RS07280	0.21	+0.8
1,642,897	+		DDA3937_RS07280	0.22	-0.3
1,642,902	-		DDA3937_RS07280	0.23	+0.7
1,642,943	-		DDA3937_RS07280	0.25	-1.0
1,642,994	+		DDA3937_RS07280	0.28	+1.0
1,643,069	-		DDA3937_RS07280	0.33	-1.7
1,643,093	+		DDA3937_RS07280	0.35	-1.1
1,643,097	+		DDA3937_RS07280	0.35	-0.8
1,643,097	+		DDA3937_RS07280	0.35	-1.3
1,643,097	+		DDA3937_RS07280	0.35	-0.3
1,643,097	+		DDA3937_RS07280	0.35	-0.6
1,643,098	-		DDA3937_RS07280	0.35	-0.4
1,643,098	-		DDA3937_RS07280	0.35	-0.2
1,643,098	-		DDA3937_RS07280	0.35	+0.5
1,643,098	-		DDA3937_RS07280	0.35	-1.7
1,643,098	-		DDA3937_RS07280	0.35	+1.0
1,643,128	+		DDA3937_RS07280	0.37	+1.0
1,643,129	-		DDA3937_RS07280	0.37	+1.4
1,643,141	+		DDA3937_RS07280	0.38	+0.7
1,643,142	-		DDA3937_RS07280	0.38	-3.9
1,643,142	-		DDA3937_RS07280	0.38	+0.1
1,643,164	+		DDA3937_RS07280	0.39	+1.4
1,643,164	+		DDA3937_RS07280	0.39	-1.7
1,643,165	-		DDA3937_RS07280	0.39	+0.6
1,643,165	-		DDA3937_RS07280	0.39	-0.6
1,643,168	+		DDA3937_RS07280	0.39	-0.3
1,643,169	-		DDA3937_RS07280	0.39	+0.1
1,643,169	-				+1.3
1,643,169	-		DDA3937_RS07280	0.39	-1.3
1,643,287	+		DDA3937_RS07280	0.47	-0.4
1,643,407	+		DDA3937_RS07280	0.55	-1.1
1,643,432	+		DDA3937_RS07280	0.56	-1.3
1,643,432	+		DDA3937_RS07280	0.56	+0.1