Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06560

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,462,459	+		DDA3937_RS06555	0.23	-1.3
1,462,459	+		DDA3937_RS06555	0.23	-0.5
1,462,474	+		DDA3937_RS06555	0.24	-0.4
1,462,474	+		DDA3937_RS06555	0.24	-0.7
1,462,474	+		DDA3937_RS06555	0.24	+0.2
1,462,474	+		DDA3937_RS06555	0.24	-0.8
1,462,474	+		DDA3937_RS06555	0.24	-0.9
1,462,474	+		DDA3937_RS06555	0.24	+1.9
1,462,474	+		DDA3937_RS06555	0.24	-1.3
1,462,474	+		DDA3937_RS06555	0.24	-0.2
1,462,474	+		DDA3937_RS06555	0.24	-1.9
1,462,474	+		DDA3937_RS06555	0.24	-1.7
1,462,474	+		DDA3937_RS06555	0.24	+0.7
1,462,474	+		DDA3937_RS06555	0.24	-0.1
1,462,475	-		DDA3937_RS06555	0.24	-0.5
1,462,475	-				+1.3
1,462,475	-		DDA3937_RS06555	0.24	+0.1
1,462,475	-		DDA3937_RS06555	0.24	-1.5
1,462,475	-		DDA3937_RS06555	0.24	-1.6
1,462,475	-		DDA3937_RS06555	0.24	-1.4
1,462,484	-		DDA3937_RS06555	0.25	-1.4
1,462,615	+				+1.1
1,462,615	+		DDA3937_RS06555	0.39	-1.3
1,462,615	+		DDA3937_RS06555	0.39	-0.8
1,462,615	+		DDA3937_RS06555	0.39	+0.6
1,462,615	+		DDA3937_RS06555	0.39	-0.2
1,462,663	-		DDA3937_RS06555	0.45	+0.3
1,462,741	-		DDA3937_RS06555	0.53	-0.1
1,462,879	-		DDA3937_RS06555	0.68	+0.2
1,462,904	-				-0.5
1,462,904	-		DDA3937_RS06555	0.70	-0.0
1,462,944	-		DDA3937_RS06555	0.75	-1.9
1,462,944	-		DDA3937_RS06555	0.75	+0.0
1,462,944	-		DDA3937_RS06555	0.75	+0.1
1,463,071	+		DDA3937_RS06555	0.88	+0.3
1,463,097	+				-0.1
1,463,187	-				-0.1
1,463,193	+				+0.4
1,463,205	+				+0.5
1,463,206	-				-0.8
1,463,206	-				+1.4
1,463,295	+				-2.0
1,463,295	+				-0.9
1,463,295	+				-1.3
1,463,295	+				+0.7
1,463,320	+				-0.7
1,463,321	-				+2.1
1,463,348	+				-1.1
1,463,348	+				+0.8
1,463,348	+				+0.7
1,463,348	+				+0.4
1,463,349	-				+0.2
1,463,349	-				-1.1
1,463,350	+				-1.5
1,463,350	+				-1.3
1,463,350	+				-1.5
1,463,350	+				-0.5
1,463,350	+				-0.5
1,463,350	+				-0.9
1,463,351	-				-0.2
1,463,351	-				-0.8
1,463,351	-				-1.3
1,463,351	-				-0.2
1,463,351	-				+0.1
1,463,351	-				-1.1
1,463,351	-				-0.5
1,463,351	-				-0.1
1,463,353	+				-2.0
1,463,353	+				-0.2
1,463,354	-				-0.9
1,463,354	-				+0.0
1,463,354	-				-0.2
1,463,354	-				-0.1
1,463,367	+				-1.4
1,463,368	-				+0.8
1,463,492	+				-0.6
1,463,500	+				+0.7
1,463,501	-				-0.9
1,463,560	+		DDA3937_RS06560	0.10	-0.2
1,463,565	-		DDA3937_RS06560	0.11	-1.5
1,463,600	+		DDA3937_RS06560	0.14	-1.6
1,463,601	-		DDA3937_RS06560	0.14	+0.1
1,463,667	+		DDA3937_RS06560	0.20	-1.1
1,463,668	-		DDA3937_RS06560	0.20	+0.9
1,463,722	+		DDA3937_RS06560	0.25	-0.5
1,463,722	+		DDA3937_RS06560	0.25	+3.2
1,463,733	+		DDA3937_RS06560	0.26	-0.7
1,463,751	-		DDA3937_RS06560	0.28	-0.5
1,463,758	+		DDA3937_RS06560	0.29	-0.1
1,463,758	+		DDA3937_RS06560	0.29	-0.7
1,463,758	+		DDA3937_RS06560	0.29	+0.2
1,463,759	-		DDA3937_RS06560	0.29	-0.6
1,463,759	-		DDA3937_RS06560	0.29	+0.2
1,463,759	-		DDA3937_RS06560	0.29	-0.1
1,463,891	+		DDA3937_RS06560	0.42	-0.5
1,463,907	+		DDA3937_RS06560	0.43	+0.1
1,463,907	+		DDA3937_RS06560	0.43	-0.6
1,463,907	+		DDA3937_RS06560	0.43	-2.4
1,463,907	+		DDA3937_RS06560	0.43	-0.9
1,463,908	-		DDA3937_RS06560	0.43	+1.4
1,463,908	-		DDA3937_RS06560	0.43	-1.0
1,463,908	-		DDA3937_RS06560	0.43	-0.3
1,464,037	+				-1.3
1,464,143	+		DDA3937_RS06560	0.65	-1.9
1,464,143	+		DDA3937_RS06560	0.65	+0.5
1,464,144	-		DDA3937_RS06560	0.66	+3.6
1,464,174	+		DDA3937_RS06560	0.68	+1.1
1,464,174	+		DDA3937_RS06560	0.68	-0.2
1,464,174	+		DDA3937_RS06560	0.68	+0.1
1,464,175	-		DDA3937_RS06560	0.68	-0.0
1,464,175	-		DDA3937_RS06560	0.68	-0.6
1,464,295	+		DDA3937_RS06560	0.80	+0.5
1,464,295	+		DDA3937_RS06560	0.80	+0.1
1,464,295	+		DDA3937_RS06560	0.80	+1.3
1,464,295	+		DDA3937_RS06560	0.80	-1.0
1,464,296	-		DDA3937_RS06560	0.80	+0.2
1,464,296	-		DDA3937_RS06560	0.80	+0.7
1,464,296	-		DDA3937_RS06560	0.80	+0.1
1,464,296	-		DDA3937_RS06560	0.80	-0.4
1,464,296	-		DDA3937_RS06560	0.80	+0.6
1,464,296	-		DDA3937_RS06560	0.80	-0.2
1,464,307	+		DDA3937_RS06560	0.81	-0.3
1,464,307	+		DDA3937_RS06560	0.81	-1.0
1,464,308	-		DDA3937_RS06560	0.81	+0.2
1,464,308	-		DDA3937_RS06560	0.81	-0.6
1,464,308	-		DDA3937_RS06560	0.81	-0.4
1,464,308	-		DDA3937_RS06560	0.81	+0.8
1,464,308	-		DDA3937_RS06560	0.81	-1.5
1,464,308	-		DDA3937_RS06560	0.81	+0.3
1,464,410	-				+0.1
1,464,410	-				-0.7
1,464,411	+				-2.5
1,464,411	+				+0.1
1,464,545	+				+1.4
1,464,545	+				+1.1
1,464,545	+				-1.0
1,464,545	+				+0.1
1,464,546	-				-2.1
1,464,546	-				-0.9
1,464,559	+				+0.2
1,464,560	-				+0.0
1,464,560	-				-0.3
1,464,591	+				-0.6
1,464,683	+				+0.8
1,464,683	+				-0.8
1,464,714	-				+0.1
1,464,728	+				+2.1
1,464,824	+		DDA3937_RS06565	0.15	+1.0
1,464,824	+		DDA3937_RS06565	0.15	+1.1
1,464,825	-		DDA3937_RS06565	0.15	-0.7
1,464,825	-		DDA3937_RS06565	0.15	+0.6
1,464,825	-		DDA3937_RS06565	0.15	-0.2
1,464,844	+		DDA3937_RS06565	0.16	-0.1
1,464,844	+		DDA3937_RS06565	0.16	+0.0
1,464,844	+		DDA3937_RS06565	0.16	+1.2
1,464,844	+		DDA3937_RS06565	0.16	-1.2
1,464,940	+		DDA3937_RS06565	0.24	-0.7
1,464,940	+		DDA3937_RS06565	0.24	-0.6
1,465,111	+		DDA3937_RS06565	0.37	-0.2
1,465,150	+		DDA3937_RS06565	0.40	-0.2
1,465,151	-		DDA3937_RS06565	0.40	+0.8
1,465,232	+		DDA3937_RS06565	0.46	-0.8
1,465,232	+		DDA3937_RS06565	0.46	-0.2
1,465,233	-		DDA3937_RS06565	0.46	+0.3
1,465,233	-		DDA3937_RS06565	0.46	-0.9
1,465,233	-		DDA3937_RS06565	0.46	+0.2
1,465,233	-		DDA3937_RS06565	0.46	-0.1
1,465,235	-		DDA3937_RS06565	0.46	+0.5
1,465,339	-		DDA3937_RS06565	0.54	-1.1
1,465,339	-		DDA3937_RS06565	0.54	-0.4
1,465,339	-		DDA3937_RS06565	0.54	+0.6