Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05705

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,274,618	+		DDA3937_RS05700	0.34	+0.7
1,274,619	-		DDA3937_RS05700	0.34	+1.1
1,274,619	-		DDA3937_RS05700	0.34	-0.4
1,274,670	+		DDA3937_RS05700	0.38	-0.9
1,274,670	+		DDA3937_RS05700	0.38	+0.1
1,274,670	+		DDA3937_RS05700	0.38	-1.0
1,274,671	-		DDA3937_RS05700	0.38	+0.3
1,274,671	-		DDA3937_RS05700	0.38	-0.1
1,274,692	+		DDA3937_RS05700	0.40	-1.0
1,274,749	+		DDA3937_RS05700	0.44	+0.7
1,274,749	+		DDA3937_RS05700	0.44	+1.9
1,274,750	-		DDA3937_RS05700	0.44	-0.3
1,274,750	-		DDA3937_RS05700	0.44	+0.7
1,274,752	+		DDA3937_RS05700	0.44	-0.3
1,274,752	+		DDA3937_RS05700	0.44	-0.6
1,274,752	+		DDA3937_RS05700	0.44	-0.7
1,274,752	+		DDA3937_RS05700	0.44	+0.1
1,274,752	+		DDA3937_RS05700	0.44	+1.2
1,274,753	-		DDA3937_RS05700	0.44	+0.8
1,274,753	-		DDA3937_RS05700	0.44	-1.1
1,274,753	-		DDA3937_RS05700	0.44	-0.7
1,274,753	-		DDA3937_RS05700	0.44	+1.4
1,274,855	-		DDA3937_RS05700	0.52	-0.1
1,274,877	+		DDA3937_RS05700	0.54	-1.1
1,274,877	+		DDA3937_RS05700	0.54	-0.2
1,274,877	+		DDA3937_RS05700	0.54	-2.0
1,274,878	-		DDA3937_RS05700	0.54	-1.2
1,275,005	+		DDA3937_RS05700	0.64	-0.2
1,275,005	+		DDA3937_RS05700	0.64	-0.4
1,275,047	+		DDA3937_RS05700	0.67	-1.4
1,275,048	-		DDA3937_RS05700	0.67	-1.9
1,275,193	+		DDA3937_RS05700	0.78	-0.6
1,275,193	+		DDA3937_RS05700	0.78	+1.1
1,275,193	+		DDA3937_RS05700	0.78	+0.7
1,275,193	+		DDA3937_RS05700	0.78	-0.4
1,275,193	+		DDA3937_RS05700	0.78	-0.1
1,275,193	+		DDA3937_RS05700	0.78	-0.5
1,275,194	-		DDA3937_RS05700	0.78	+0.0
1,275,194	-		DDA3937_RS05700	0.78	-0.8
1,275,194	-		DDA3937_RS05700	0.78	+0.3
1,275,194	-		DDA3937_RS05700	0.78	-0.7
1,275,194	-				-1.4
1,275,194	-		DDA3937_RS05700	0.78	+0.7
1,275,212	-		DDA3937_RS05700	0.80	-0.2
1,275,313	+		DDA3937_RS05700	0.88	-0.5
1,275,343	+		DDA3937_RS05700	0.90	+0.8
1,275,343	+		DDA3937_RS05700	0.90	-0.2
1,275,344	-				-0.7
1,275,344	-				-0.7
1,275,344	-				+0.1
1,275,462	+				-0.4
1,275,463	-				+0.1
1,275,463	-				+0.4
1,275,471	+				+0.2
1,275,471	+				-1.4
1,275,471	+				-0.9
1,275,636	+				-0.9
1,275,636	+				+0.6
1,275,636	+				-1.0
1,275,637	-				-1.7
1,275,637	-				+1.0
1,275,764	-		DDA3937_RS05705	0.23	-0.4
1,275,829	+		DDA3937_RS05705	0.30	-2.0
1,275,829	+		DDA3937_RS05705	0.30	-0.5
1,275,829	+		DDA3937_RS05705	0.30	-0.1
1,275,830	-		DDA3937_RS05705	0.30	-1.9
1,275,830	-		DDA3937_RS05705	0.30	+0.1
1,275,831	+		DDA3937_RS05705	0.30	-0.4
1,275,843	+		DDA3937_RS05705	0.32	-1.2
1,275,844	-		DDA3937_RS05705	0.32	+0.1
1,275,893	+		DDA3937_RS05705	0.38	-0.5
1,275,894	-		DDA3937_RS05705	0.38	+0.0
1,275,894	-		DDA3937_RS05705	0.38	+0.3
1,275,894	-		DDA3937_RS05705	0.38	-0.6
1,275,894	-		DDA3937_RS05705	0.38	+0.9
1,275,894	-		DDA3937_RS05705	0.38	-1.0
1,275,927	-		DDA3937_RS05705	0.41	-0.3
1,275,992	-		DDA3937_RS05705	0.49	+0.1
1,276,043	+		DDA3937_RS05705	0.55	-0.6
1,276,043	+		DDA3937_RS05705	0.55	-1.1
1,276,199	+		DDA3937_RS05705	0.73	+0.1
1,276,199	+		DDA3937_RS05705	0.73	+0.1
1,276,200	-		DDA3937_RS05705	0.73	-1.0
1,276,200	-		DDA3937_RS05705	0.73	+0.1
1,276,200	-		DDA3937_RS05705	0.73	+0.1
1,276,200	-		DDA3937_RS05705	0.73	-0.4
1,276,206	+		DDA3937_RS05705	0.74	-0.9
1,276,206	+		DDA3937_RS05705	0.74	-0.5
1,276,206	+		DDA3937_RS05705	0.74	+0.1
1,276,206	+		DDA3937_RS05705	0.74	+0.0
1,276,206	+		DDA3937_RS05705	0.74	+0.7
1,276,206	+		DDA3937_RS05705	0.74	+0.1
1,276,207	-		DDA3937_RS05705	0.74	-0.7
1,276,207	-		DDA3937_RS05705	0.74	+0.0
1,276,245	+		DDA3937_RS05705	0.78	-0.1
1,276,246	-		DDA3937_RS05705	0.78	-1.9
1,276,246	-		DDA3937_RS05705	0.78	-0.4
1,276,265	-		DDA3937_RS05705	0.81	-1.7
1,276,265	-		DDA3937_RS05705	0.81	-0.1
1,276,331	+		DDA3937_RS05705	0.88	+0.1
1,276,332	-		DDA3937_RS05705	0.88	+0.5
1,276,332	-		DDA3937_RS05705	0.88	-1.7
1,276,341	-		DDA3937_RS05705	0.89	+0.4
1,276,432	+				+0.0
1,276,433	-				-0.4
1,276,433	-				-0.2
1,276,433	-				-0.4
1,276,433	-				+0.0
1,276,459	+				+0.4
1,276,520	-				-0.7
1,276,520	-				-0.2
1,276,541	+				-0.4
1,276,557	+				+1.0
1,276,557	+				-0.4
1,276,558	-				-0.3
1,276,558	-				+0.3
1,276,558	-				-0.7
1,276,561	+				-0.6
1,276,561	+				-0.2
1,276,562	-				+1.1
1,276,562	-				+0.1
1,276,562	-				-1.0
1,276,579	+				+4.1
1,276,579	+				+0.7
1,276,579	+				+0.7
1,276,580	-				-0.9
1,276,580	-				+3.1
1,276,580	-				+0.5
1,276,587	-				+0.1
1,276,602	+				+0.4
1,276,602	+				+0.1
1,276,603	-				-0.2
1,276,603	-				-0.3
1,276,603	-				-0.0
1,276,648	+				+0.0
1,276,648	+				-2.7
1,276,648	+				-0.1
1,276,652	+				+0.2
1,276,652	+				+0.3
1,276,653	-				-1.2
1,276,653	-				-1.9
1,276,662	+				-0.2
1,276,662	+				-1.6
1,276,662	+				-1.2
1,276,662	+				+1.3
1,276,662	+				+0.2
1,276,662	+				+0.1
1,276,662	+				+0.3
1,276,662	+				+0.1
1,276,662	+				-1.6
1,276,662	+				+0.4
1,276,663	-				-0.4
1,276,663	-				-2.7
1,276,663	-				-0.7
1,276,663	-				+0.1
1,276,663	-				-0.8
1,276,666	+				-2.3
1,276,666	+				-0.9
1,276,666	+				+0.5
1,276,667	-				-0.8
1,276,667	-				-1.7
1,276,667	-				+0.7
1,276,675	-				+1.1
1,276,681	+				-0.1
1,276,681	+				-0.6
1,276,681	+				-0.6
1,276,681	+				+0.7
1,276,682	-				+0.5
1,276,682	-				+1.1
1,276,682	-				-1.7
1,276,682	-				-1.2
1,276,694	-				+2.6
1,276,832	-		DDA3937_RS05710	0.30	+1.4
1,276,905	+		DDA3937_RS05710	0.43	+2.3
1,276,905	+		DDA3937_RS05710	0.43	+0.0
1,276,906	-		DDA3937_RS05710	0.43	+0.3
1,276,979	+		DDA3937_RS05710	0.56	+0.2
1,276,979	+		DDA3937_RS05710	0.56	+1.5
1,276,980	-		DDA3937_RS05710	0.56	+0.1
1,276,980	-		DDA3937_RS05710	0.56	+1.2
1,276,980	-		DDA3937_RS05710	0.56	-0.7
1,276,982	-		DDA3937_RS05710	0.56	+0.1
1,277,219	+				-2.1
1,277,219	+				+0.8
1,277,219	+				-0.4
1,277,219	+				-1.7
1,277,219	+				+0.1
1,277,219	+				+0.3
1,277,220	-				+0.6
1,277,220	-				-0.4
1,277,220	-				+0.4
1,277,222	+				+0.5
1,277,222	+				+1.1
1,277,222	+				-0.5
1,277,222	+				+1.7
1,277,222	+				-0.3
1,277,222	+				-0.9
1,277,222	+				-0.9
1,277,222	+				+0.1
1,277,222	+				+0.1
1,277,223	-				-1.0
1,277,223	-				+0.7
1,277,223	-				-0.3
1,277,223	-				-1.1
1,277,256	+				-1.2
1,277,256	+				-1.1
1,277,256	+				-0.0
1,277,257	-				-1.6
1,277,257	-				+0.4
1,277,261	+				+0.1
1,277,261	+				+2.1
1,277,261	+				+0.3
1,277,262	-				+1.0
1,277,262	-				+1.4
1,277,262	-				-0.4
1,277,274	+				+1.2