Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05680

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,268,423	+		DDA3937_RS05675	0.18	-0.7
1,268,423	+		DDA3937_RS05675	0.18	-0.8
1,268,424	-		DDA3937_RS05675	0.18	-0.2
1,268,424	-		DDA3937_RS05675	0.18	-0.6
1,268,424	-		DDA3937_RS05675	0.18	-0.4
1,268,534	+		DDA3937_RS05675	0.29	-0.3
1,268,626	+		DDA3937_RS05675	0.37	-0.3
1,268,627	-		DDA3937_RS05675	0.38	+0.3
1,268,627	-		DDA3937_RS05675	0.38	-1.0
1,268,650	-		DDA3937_RS05675	0.40	+2.4
1,268,650	-		DDA3937_RS05675	0.40	-0.2
1,268,650	-		DDA3937_RS05675	0.40	+0.4
1,268,650	-		DDA3937_RS05675	0.40	-0.5
1,268,650	-		DDA3937_RS05675	0.40	-1.8
1,268,667	-		DDA3937_RS05675	0.41	-2.7
1,268,679	-		DDA3937_RS05675	0.42	-0.3
1,268,679	-		DDA3937_RS05675	0.42	+0.8
1,268,679	-		DDA3937_RS05675	0.42	+0.6
1,268,679	-		DDA3937_RS05675	0.42	+0.9
1,268,680	+		DDA3937_RS05675	0.43	-1.9
1,268,681	-		DDA3937_RS05675	0.43	-1.3
1,268,689	+		DDA3937_RS05675	0.43	-3.4
1,268,689	+		DDA3937_RS05675	0.43	+0.7
1,268,740	+		DDA3937_RS05675	0.48	+0.1
1,268,740	+		DDA3937_RS05675	0.48	-1.9
1,268,740	+		DDA3937_RS05675	0.48	+0.1
1,268,741	-		DDA3937_RS05675	0.48	-2.7
1,268,741	-		DDA3937_RS05675	0.48	+0.7
1,268,741	-		DDA3937_RS05675	0.48	-0.5
1,268,741	-		DDA3937_RS05675	0.48	+0.0
1,268,741	-		DDA3937_RS05675	0.48	+0.3
1,268,780	-		DDA3937_RS05675	0.52	-0.6
1,268,834	-		DDA3937_RS05675	0.57	+1.9
1,268,834	-				+0.1
1,268,837	+		DDA3937_RS05675	0.57	-0.9
1,268,837	+		DDA3937_RS05675	0.57	+0.9
1,268,837	+		DDA3937_RS05675	0.57	+0.6
1,268,838	-		DDA3937_RS05675	0.58	-0.1
1,268,838	-		DDA3937_RS05675	0.58	-0.7
1,268,838	-		DDA3937_RS05675	0.58	-0.7
1,268,851	+		DDA3937_RS05675	0.59	-0.7
1,268,851	+		DDA3937_RS05675	0.59	+1.6
1,268,851	+		DDA3937_RS05675	0.59	+1.2
1,268,851	+		DDA3937_RS05675	0.59	-0.6
1,268,851	+		DDA3937_RS05675	0.59	-0.6
1,268,851	+		DDA3937_RS05675	0.59	-1.1
1,268,851	+		DDA3937_RS05675	0.59	+0.4
1,268,852	-		DDA3937_RS05675	0.59	+1.3
1,268,852	-		DDA3937_RS05675	0.59	-1.7
1,268,852	-		DDA3937_RS05675	0.59	-1.4
1,268,852	-				+0.1
1,268,852	-		DDA3937_RS05675	0.59	+1.4
1,268,852	-		DDA3937_RS05675	0.59	-0.2
1,268,852	-		DDA3937_RS05675	0.59	-0.4
1,268,852	-		DDA3937_RS05675	0.59	+1.3
1,268,893	+		DDA3937_RS05675	0.63	-1.0
1,268,893	+		DDA3937_RS05675	0.63	+0.1
1,268,935	+		DDA3937_RS05675	0.67	-0.6
1,268,936	-		DDA3937_RS05675	0.67	-2.3
1,269,020	-		DDA3937_RS05675	0.75	-0.3
1,269,020	-		DDA3937_RS05675	0.75	-0.7
1,269,020	-		DDA3937_RS05675	0.75	+0.1
1,269,100	+		DDA3937_RS05675	0.82	-2.8
1,269,170	-		DDA3937_RS05675	0.89	-0.6
1,269,176	-		DDA3937_RS05675	0.90	-0.3
1,269,176	-		DDA3937_RS05675	0.90	+0.4
1,269,176	-		DDA3937_RS05675	0.90	-1.8
1,269,306	+				+0.7
1,269,313	+				-0.9
1,269,313	+				-0.9
1,269,313	+				+1.1
1,269,314	-				+0.0
1,269,328	-				+0.3
1,269,434	+				-0.0
1,269,435	-				-0.7
1,269,435	-				+0.2
1,269,435	-				+1.0
1,269,451	+				+0.6
1,269,464	+		DDA3937_RS05680	0.11	-0.7
1,269,464	+		DDA3937_RS05680	0.11	+0.0
1,269,464	+		DDA3937_RS05680	0.11	-0.9
1,269,465	-		DDA3937_RS05680	0.11	-0.2
1,269,465	-		DDA3937_RS05680	0.11	-1.2
1,269,470	-		DDA3937_RS05680	0.12	-0.7
1,269,470	-		DDA3937_RS05680	0.12	-0.9
1,269,510	-		DDA3937_RS05680	0.21	-0.2
1,269,553	-		DDA3937_RS05680	0.30	-0.4
1,269,553	-		DDA3937_RS05680	0.30	-0.3
1,269,557	+		DDA3937_RS05680	0.31	-0.8
1,269,557	+		DDA3937_RS05680	0.31	-0.8
1,269,557	+		DDA3937_RS05680	0.31	-0.2
1,269,557	+		DDA3937_RS05680	0.31	-1.6
1,269,557	+		DDA3937_RS05680	0.31	-0.4
1,269,557	+		DDA3937_RS05680	0.31	-0.4
1,269,557	+		DDA3937_RS05680	0.31	-1.2
1,269,557	+		DDA3937_RS05680	0.31	+1.1
1,269,557	+		DDA3937_RS05680	0.31	-0.4
1,269,558	-		DDA3937_RS05680	0.31	+0.4
1,269,558	-		DDA3937_RS05680	0.31	-0.2
1,269,558	-		DDA3937_RS05680	0.31	-0.1
1,269,558	-		DDA3937_RS05680	0.31	-0.4
1,269,558	-		DDA3937_RS05680	0.31	+0.8
1,269,558	-		DDA3937_RS05680	0.31	-0.1
1,269,616	+		DDA3937_RS05680	0.44	+1.3
1,269,616	+		DDA3937_RS05680	0.44	-0.9
1,269,617	-		DDA3937_RS05680	0.44	-0.0
1,269,617	-		DDA3937_RS05680	0.44	-0.9
1,269,617	-		DDA3937_RS05680	0.44	+0.7
1,269,619	+		DDA3937_RS05680	0.44	+0.9
1,269,620	-		DDA3937_RS05680	0.45	-1.2
1,269,720	+		DDA3937_RS05680	0.66	+1.0
1,269,720	+		DDA3937_RS05680	0.66	+0.7
1,269,721	-		DDA3937_RS05680	0.66	-1.3
1,269,721	-		DDA3937_RS05680	0.66	+1.3
1,269,726	+		DDA3937_RS05680	0.68	-0.9
1,269,727	-		DDA3937_RS05680	0.68	-1.2
1,269,762	+		DDA3937_RS05680	0.75	-0.1
1,269,762	+		DDA3937_RS05680	0.75	+0.2
1,269,763	-		DDA3937_RS05680	0.76	-0.8
1,269,763	-		DDA3937_RS05680	0.76	-0.4
1,269,763	-		DDA3937_RS05680	0.76	-0.4
1,269,889	+				-0.4
1,269,890	-				+0.7
1,269,896	+				-1.0
1,269,896	+				+1.5
1,269,896	+				-0.6
1,269,896	+				-1.4
1,269,896	+				+0.4
1,269,896	+				-1.0
1,269,896	+				-0.4
1,269,897	-				-1.2
1,269,897	-				-0.9
1,269,897	-				-0.2
1,269,897	-				-1.2
1,269,897	-				+2.3
1,269,897	-				+1.2
1,269,901	-				+1.1
1,269,901	-				+0.8
1,269,905	+				+0.4
1,269,906	-				+0.1
1,269,906	-				+0.7
1,269,906	-				-1.0
1,269,906	-				+0.3
1,269,906	-				-0.9
1,269,914	+				-1.3
1,269,924	+				+0.1
1,269,936	+				-1.2
1,269,980	+				-0.3
1,269,981	-				+0.3
1,270,004	+				+1.1
1,270,120	-				-0.3
1,270,163	+		DDA3937_RS05685	0.12	-0.4
1,270,163	+		DDA3937_RS05685	0.12	-1.3
1,270,242	-		DDA3937_RS05685	0.16	-0.7
1,270,335	+		DDA3937_RS05685	0.22	-0.7
1,270,336	-		DDA3937_RS05685	0.22	-0.7
1,270,411	+		DDA3937_RS05685	0.26	-0.2
1,270,438	-		DDA3937_RS05685	0.27	+4.4
1,270,799	+		DDA3937_RS05685	0.48	+0.8
1,270,799	+		DDA3937_RS05685	0.48	+0.2
1,270,799	+		DDA3937_RS05685	0.48	-0.8
1,270,799	+		DDA3937_RS05685	0.48	+0.5
1,270,846	+		DDA3937_RS05685	0.51	-1.7
1,270,849	+		DDA3937_RS05685	0.51	-0.2
1,270,850	-		DDA3937_RS05685	0.51	-1.3