Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS05205 and DDA3937_RS05210 are separated by 45 nucleotides DDA3937_RS05210 and DDA3937_RS05215 overlap by 14 nucleotides DDA3937_RS05215 and DDA3937_RS05220 are separated by 239 nucleotides
DDA3937_RS05205: DDA3937_RS05205 - tRNA lysidine(34) synthetase TilS, at 1,162,251 to 1,163,579
_RS05205
DDA3937_RS05210: DDA3937_RS05210 - Rho-binding antiterminator, at 1,163,625 to 1,163,885
_RS05210
DDA3937_RS05215: DDA3937_RS05215 - YaeP family protein, at 1,163,872 to 1,164,072
_RS05215
DDA3937_RS05220: DDA3937_RS05220 - YaeQ family protein, at 1,164,312 to 1,164,860
_RS05220
Position (kb) 1163
1164 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1163.609 kb on + strand at 1163.610 kb on - strand at 1163.610 kb on - strand at 1163.610 kb on - strand at 1163.678 kb on + strand, within DDA3937_RS05210 at 1163.679 kb on - strand, within DDA3937_RS05210 at 1163.679 kb on - strand, within DDA3937_RS05210 at 1163.679 kb on - strand, within DDA3937_RS05210 at 1163.679 kb on - strand, within DDA3937_RS05210 at 1163.728 kb on + strand at 1163.842 kb on + strand, within DDA3937_RS05210 at 1163.843 kb on - strand, within DDA3937_RS05210 at 1163.843 kb on - strand at 1163.866 kb on + strand at 1163.873 kb on + strand at 1163.873 kb on + strand at 1163.885 kb on + strand at 1163.885 kb on + strand at 1163.885 kb on + strand at 1163.885 kb on + strand at 1163.886 kb on - strand at 1163.886 kb on - strand at 1163.886 kb on - strand at 1163.899 kb on + strand, within DDA3937_RS05215 at 1163.899 kb on + strand, within DDA3937_RS05215 at 1163.900 kb on - strand, within DDA3937_RS05215 at 1163.904 kb on + strand, within DDA3937_RS05215 at 1163.915 kb on + strand, within DDA3937_RS05215 at 1163.916 kb on - strand, within DDA3937_RS05215 at 1163.916 kb on - strand, within DDA3937_RS05215 at 1163.944 kb on + strand, within DDA3937_RS05215 at 1163.944 kb on + strand, within DDA3937_RS05215 at 1163.944 kb on + strand, within DDA3937_RS05215 at 1163.945 kb on - strand, within DDA3937_RS05215 at 1163.945 kb on - strand, within DDA3937_RS05215 at 1164.006 kb on + strand, within DDA3937_RS05215 at 1164.006 kb on + strand, within DDA3937_RS05215 at 1164.006 kb on + strand, within DDA3937_RS05215 at 1164.007 kb on - strand, within DDA3937_RS05215 at 1164.039 kb on - strand, within DDA3937_RS05215 at 1164.049 kb on + strand, within DDA3937_RS05215 at 1164.049 kb on + strand, within DDA3937_RS05215 at 1164.062 kb on + strand at 1164.062 kb on + strand at 1164.063 kb on - strand at 1164.063 kb on - strand at 1164.063 kb on - strand at 1164.072 kb on + strand at 1164.073 kb on - strand at 1164.073 kb on - strand at 1164.075 kb on + strand at 1164.075 kb on + strand at 1164.076 kb on - strand at 1164.076 kb on - strand at 1164.141 kb on + strand at 1164.141 kb on + strand at 1164.141 kb on + strand at 1164.141 kb on + strand at 1164.141 kb on + strand at 1164.141 kb on + strand at 1164.141 kb on + strand at 1164.141 kb on + strand at 1164.141 kb on + strand at 1164.142 kb on - strand at 1164.142 kb on - strand at 1164.142 kb on - strand at 1164.148 kb on - strand at 1164.156 kb on - strand at 1164.156 kb on - strand at 1164.156 kb on - strand at 1164.178 kb on + strand at 1164.179 kb on - strand at 1164.180 kb on + strand at 1164.180 kb on + strand at 1164.180 kb on + strand at 1164.180 kb on + strand at 1164.180 kb on + strand at 1164.180 kb on + strand at 1164.180 kb on + strand at 1164.180 kb on + strand at 1164.181 kb on - strand at 1164.181 kb on - strand at 1164.181 kb on - strand at 1164.181 kb on - strand at 1164.181 kb on - strand at 1164.181 kb on - strand at 1164.185 kb on + strand at 1164.185 kb on + strand at 1164.186 kb on - strand at 1164.186 kb on - strand at 1164.208 kb on + strand at 1164.208 kb on + strand at 1164.208 kb on + strand at 1164.209 kb on - strand at 1164.209 kb on - strand at 1164.221 kb on + strand at 1164.221 kb on + strand at 1164.221 kb on + strand at 1164.221 kb on + strand at 1164.221 kb on + strand at 1164.222 kb on - strand at 1164.222 kb on - strand at 1164.222 kb on - strand at 1164.222 kb on - strand at 1164.222 kb on - strand at 1164.264 kb on + strand at 1164.264 kb on + strand at 1164.264 kb on + strand at 1164.265 kb on - strand at 1164.265 kb on - strand at 1164.265 kb on - strand at 1164.265 kb on - strand at 1164.280 kb on + strand at 1164.280 kb on + strand at 1164.281 kb on - strand at 1164.320 kb on - strand at 1164.333 kb on + strand at 1164.436 kb on + strand, within DDA3937_RS05220 at 1164.436 kb on + strand, within DDA3937_RS05220 at 1164.437 kb on - strand, within DDA3937_RS05220 at 1164.550 kb on + strand, within DDA3937_RS05220 at 1164.599 kb on + strand, within DDA3937_RS05220 at 1164.599 kb on + strand, within DDA3937_RS05220 at 1164.599 kb on + strand, within DDA3937_RS05220 at 1164.599 kb on + strand, within DDA3937_RS05220 at 1164.600 kb on - strand, within DDA3937_RS05220 at 1164.600 kb on - strand, within DDA3937_RS05220 at 1164.624 kb on + strand, within DDA3937_RS05220 at 1164.624 kb on + strand, within DDA3937_RS05220 at 1164.624 kb on + strand, within DDA3937_RS05220 at 1164.624 kb on + strand, within DDA3937_RS05220 at 1164.624 kb on + strand, within DDA3937_RS05220 at 1164.625 kb on - strand, within DDA3937_RS05220 at 1164.625 kb on - strand, within DDA3937_RS05220 at 1164.625 kb on - strand, within DDA3937_RS05220 at 1164.625 kb on - strand, within DDA3937_RS05220 at 1164.625 kb on - strand, within DDA3937_RS05220 at 1164.630 kb on + strand, within DDA3937_RS05220 at 1164.766 kb on + strand, within DDA3937_RS05220 at 1164.766 kb on + strand, within DDA3937_RS05220 at 1164.766 kb on + strand, within DDA3937_RS05220 at 1164.766 kb on + strand, within DDA3937_RS05220 at 1164.791 kb on + strand, within DDA3937_RS05220 at 1164.791 kb on + strand, within DDA3937_RS05220 at 1164.791 kb on + strand, within DDA3937_RS05220 at 1164.791 kb on + strand, within DDA3937_RS05220 at 1164.792 kb on - strand, within DDA3937_RS05220 at 1164.792 kb on - strand, within DDA3937_RS05220 at 1164.792 kb on - strand, within DDA3937_RS05220 at 1164.792 kb on - strand, within DDA3937_RS05220 at 1164.792 kb on - strand, within DDA3937_RS05220 at 1164.816 kb on - strand at 1164.836 kb on + strand at 1164.836 kb on + strand at 1164.836 kb on + strand at 1164.837 kb on - strand at 1164.837 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,163,609 + -0.6 1,163,610 - -0.3 1,163,610 - -1.2 1,163,610 - +1.8 1,163,678 + DDA3937_RS05210 0.20 -0.4 1,163,679 - DDA3937_RS05210 0.21 -0.8 1,163,679 - DDA3937_RS05210 0.21 -0.8 1,163,679 - DDA3937_RS05210 0.21 +0.0 1,163,679 - DDA3937_RS05210 0.21 -0.6 1,163,728 + -0.4 1,163,842 + DDA3937_RS05210 0.83 -0.9 1,163,843 - DDA3937_RS05210 0.84 -1.0 1,163,843 - -0.4 1,163,866 + -0.4 1,163,873 + -1.6 1,163,873 + -1.0 1,163,885 + -2.5 1,163,885 + -0.6 1,163,885 + -0.1 1,163,885 + +0.7 1,163,886 - +0.9 1,163,886 - -0.7 1,163,886 - -1.1 1,163,899 + DDA3937_RS05215 0.13 +0.6 1,163,899 + DDA3937_RS05215 0.13 -1.5 1,163,900 - DDA3937_RS05215 0.14 -0.9 1,163,904 + DDA3937_RS05215 0.16 -0.6 1,163,915 + DDA3937_RS05215 0.21 +0.9 1,163,916 - DDA3937_RS05215 0.22 -0.8 1,163,916 - DDA3937_RS05215 0.22 -0.1 1,163,944 + DDA3937_RS05215 0.36 -2.7 1,163,944 + DDA3937_RS05215 0.36 -0.5 1,163,944 + DDA3937_RS05215 0.36 -1.2 1,163,945 - DDA3937_RS05215 0.36 +0.9 1,163,945 - DDA3937_RS05215 0.36 -1.2 1,164,006 + DDA3937_RS05215 0.67 +1.0 1,164,006 + DDA3937_RS05215 0.67 -1.0 1,164,006 + DDA3937_RS05215 0.67 -0.3 1,164,007 - DDA3937_RS05215 0.67 +1.5 1,164,039 - DDA3937_RS05215 0.83 +0.5 1,164,049 + DDA3937_RS05215 0.88 -1.6 1,164,049 + DDA3937_RS05215 0.88 -1.4 1,164,062 + +0.2 1,164,062 + +0.0 1,164,063 - -1.5 1,164,063 - -1.6 1,164,063 - +0.0 1,164,072 + -0.3 1,164,073 - -0.5 1,164,073 - -1.8 1,164,075 + -0.2 1,164,075 + -1.2 1,164,076 - -1.7 1,164,076 - -1.0 1,164,141 + +0.1 1,164,141 + +2.7 1,164,141 + +0.3 1,164,141 + +1.7 1,164,141 + +0.3 1,164,141 + +1.7 1,164,141 + +0.9 1,164,141 + +0.6 1,164,141 + -1.0 1,164,142 - -0.3 1,164,142 - -1.4 1,164,142 - -0.6 1,164,148 - +0.3 1,164,156 - -2.0 1,164,156 - -1.3 1,164,156 - +0.3 1,164,178 + -1.2 1,164,179 - -0.1 1,164,180 + -1.3 1,164,180 + +0.2 1,164,180 + -0.6 1,164,180 + +2.0 1,164,180 + -0.8 1,164,180 + +1.2 1,164,180 + +0.8 1,164,180 + +4.3 1,164,181 - -1.6 1,164,181 - -0.6 1,164,181 - -0.7 1,164,181 - +0.3 1,164,181 - -0.6 1,164,181 - +1.2 1,164,185 + -1.3 1,164,185 + +0.2 1,164,186 - +0.0 1,164,186 - -1.2 1,164,208 + -1.5 1,164,208 + -1.2 1,164,208 + -0.8 1,164,209 - -0.3 1,164,209 - -0.6 1,164,221 + +0.2 1,164,221 + -1.4 1,164,221 + +0.0 1,164,221 + +0.2 1,164,221 + -0.0 1,164,222 - -0.8 1,164,222 - -1.2 1,164,222 - -0.3 1,164,222 - -1.4 1,164,222 - -0.2 1,164,264 + -0.2 1,164,264 + -0.0 1,164,264 + -1.0 1,164,265 - +0.3 1,164,265 - -1.2 1,164,265 - -1.4 1,164,265 - -1.4 1,164,280 + -1.2 1,164,280 + +0.4 1,164,281 - -0.4 1,164,320 - +1.8 1,164,333 + -2.4 1,164,436 + DDA3937_RS05220 0.23 -0.3 1,164,436 + DDA3937_RS05220 0.23 +1.1 1,164,437 - DDA3937_RS05220 0.23 +0.6 1,164,550 + DDA3937_RS05220 0.43 -0.4 1,164,599 + DDA3937_RS05220 0.52 -0.4 1,164,599 + DDA3937_RS05220 0.52 -0.8 1,164,599 + DDA3937_RS05220 0.52 +0.4 1,164,599 + DDA3937_RS05220 0.52 -0.4 1,164,600 - DDA3937_RS05220 0.52 -0.2 1,164,600 - DDA3937_RS05220 0.52 -0.9 1,164,624 + DDA3937_RS05220 0.57 -0.6 1,164,624 + DDA3937_RS05220 0.57 -0.4 1,164,624 + DDA3937_RS05220 0.57 -0.3 1,164,624 + DDA3937_RS05220 0.57 -0.2 1,164,624 + DDA3937_RS05220 0.57 -2.0 1,164,625 - DDA3937_RS05220 0.57 +0.3 1,164,625 - DDA3937_RS05220 0.57 +0.4 1,164,625 - DDA3937_RS05220 0.57 -0.0 1,164,625 - DDA3937_RS05220 0.57 -0.4 1,164,625 - DDA3937_RS05220 0.57 +0.9 1,164,630 + DDA3937_RS05220 0.58 -0.7 1,164,766 + DDA3937_RS05220 0.83 +2.6 1,164,766 + DDA3937_RS05220 0.83 -0.9 1,164,766 + DDA3937_RS05220 0.83 -1.8 1,164,766 + DDA3937_RS05220 0.83 -1.4 1,164,791 + DDA3937_RS05220 0.87 +0.4 1,164,791 + DDA3937_RS05220 0.87 -1.2 1,164,791 + DDA3937_RS05220 0.87 -1.2 1,164,791 + DDA3937_RS05220 0.87 +1.4 1,164,792 - DDA3937_RS05220 0.87 -1.3 1,164,792 - DDA3937_RS05220 0.87 -0.3 1,164,792 - DDA3937_RS05220 0.87 -2.0 1,164,792 - DDA3937_RS05220 0.87 -1.1 1,164,792 - DDA3937_RS05220 0.87 -2.4 1,164,816 - +1.2 1,164,836 + -1.1 1,164,836 + -0.1 1,164,836 + -0.9 1,164,837 - -0.7 1,164,837 - +0.2
Or see this region's nucleotide sequence