Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04870

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,088,234	-				-0.3
1,088,239	+				-2.4
1,088,250	+				+2.2
1,088,250	+				-1.1
1,088,251	-				+1.2
1,088,251	-				+0.5
1,088,251	-				-0.1
1,088,252	+				-1.8
1,088,253	-				-1.1
1,088,253	-				+0.1
1,088,253	-				-0.3
1,088,253	-				+0.5
1,088,278	-				-0.8
1,088,372	-				+0.1
1,088,408	-				+0.0
1,088,470	-				+1.3
1,088,588	+				-1.1
1,088,588	+				-0.1
1,088,590	+				-1.1
1,088,622	-				-1.4
1,088,639	+				-2.0
1,088,639	+				-0.5
1,088,654	-				-0.0
1,088,738	+				-2.3
1,088,738	+				+0.5
1,088,738	+				-0.2
1,088,778	+				-0.6
1,088,787	+				-0.6
1,088,787	+				-2.3
1,088,788	-				-2.1
1,088,788	-				-0.1
1,088,801	+				-0.6
1,088,802	-				+0.3
1,088,802	-				+0.2
1,088,802	-				-0.1
1,088,807	-				-0.1
1,088,807	-				-1.5
1,088,807	-				+0.5
1,088,807	-				-1.1
1,088,824	-				-1.5
1,088,827	-				+0.5
1,088,840	+				+0.6
1,088,840	+				+0.7
1,088,864	-				-0.4
1,088,997	+				-0.8
1,088,997	+				-0.9
1,088,997	+				-0.4
1,088,997	+				-0.5
1,088,998	-				-0.1
1,089,090	+				-0.0
1,089,090	+				-0.7
1,089,090	+				-1.1
1,089,090	+				+0.3
1,089,090	+				-1.0
1,089,091	-				-0.4
1,089,091	-				-0.8
1,089,136	+				+0.2
1,089,136	+				-0.4
1,089,136	+				-1.2
1,089,136	+				-0.0
1,089,137	-				-1.6
1,089,159	+				+0.8
1,089,159	+				-0.5
1,089,160	-				-1.1
1,089,160	-				-0.8
1,089,192	+				+0.6
1,089,192	+				-0.1
1,089,230	+				-0.9
1,089,230	+				+1.8
1,089,231	-				-1.7
1,089,279	+				-0.6
1,089,279	+				-0.3
1,089,280	-				+0.2
1,089,345	+				+0.4
1,089,531	-		DDA3937_RS04870	0.14	+1.0
1,089,544	-		DDA3937_RS04870	0.14	-0.8
1,089,575	+		DDA3937_RS04870	0.16	-0.5
1,089,575	+		DDA3937_RS04870	0.16	+0.2
1,089,575	+		DDA3937_RS04870	0.16	-0.6
1,089,575	+		DDA3937_RS04870	0.16	-1.4
1,089,576	-		DDA3937_RS04870	0.16	+0.4
1,089,576	-		DDA3937_RS04870	0.16	+0.4
1,089,576	-				+1.2
1,089,800	+		DDA3937_RS04870	0.26	-2.6
1,089,800	+		DDA3937_RS04870	0.26	+0.2
1,089,801	-		DDA3937_RS04870	0.26	-1.0
1,089,801	-		DDA3937_RS04870	0.26	-0.2
1,089,801	-		DDA3937_RS04870	0.26	-2.0
1,089,944	+		DDA3937_RS04870	0.33	-0.1
1,089,945	-		DDA3937_RS04870	0.33	-0.2
1,089,977	-		DDA3937_RS04870	0.35	-2.3
1,090,013	+		DDA3937_RS04870	0.36	-0.6
1,090,100	+		DDA3937_RS04870	0.40	-0.8
1,090,100	+		DDA3937_RS04870	0.40	-1.4
1,090,101	-		DDA3937_RS04870	0.40	-2.8
1,090,101	-		DDA3937_RS04870	0.40	-1.0
1,090,111	+		DDA3937_RS04870	0.41	+0.7
1,090,111	+		DDA3937_RS04870	0.41	+0.4
1,090,112	-		DDA3937_RS04870	0.41	-0.6
1,090,115	+		DDA3937_RS04870	0.41	-0.6
1,090,115	+		DDA3937_RS04870	0.41	+0.2
1,090,115	+		DDA3937_RS04870	0.41	-1.4
1,090,115	+				+0.4
1,090,116	-		DDA3937_RS04870	0.41	+0.3
1,090,116	-		DDA3937_RS04870	0.41	-0.3
1,090,118	-		DDA3937_RS04870	0.41	+0.5
1,090,160	+		DDA3937_RS04870	0.43	+0.8
1,090,160	+		DDA3937_RS04870	0.43	+0.3
1,090,160	+		DDA3937_RS04870	0.43	-0.0
1,090,160	+		DDA3937_RS04870	0.43	+0.6
1,090,160	+		DDA3937_RS04870	0.43	-0.0
1,090,160	+		DDA3937_RS04870	0.43	+1.0
1,090,160	+		DDA3937_RS04870	0.43	+0.2
1,090,160	+		DDA3937_RS04870	0.43	+0.3
1,090,161	-		DDA3937_RS04870	0.43	+0.3
1,090,161	-		DDA3937_RS04870	0.43	-1.1
1,090,161	-		DDA3937_RS04870	0.43	-0.8
1,090,161	-		DDA3937_RS04870	0.43	-0.4
1,090,191	-		DDA3937_RS04870	0.44	-0.5
1,090,286	-		DDA3937_RS04870	0.49	+0.5
1,090,334	-		DDA3937_RS04870	0.51	-0.1
1,090,340	-		DDA3937_RS04870	0.51	-1.2
1,090,340	-		DDA3937_RS04870	0.51	-0.8
1,090,340	-		DDA3937_RS04870	0.51	-0.1
1,090,390	+		DDA3937_RS04870	0.54	+1.2
1,090,390	+		DDA3937_RS04870	0.54	-1.2
1,090,391	-		DDA3937_RS04870	0.54	-1.1
1,090,391	-		DDA3937_RS04870	0.54	+0.4
1,090,391	-		DDA3937_RS04870	0.54	+0.2
1,090,673	+		DDA3937_RS04870	0.67	+0.4
1,090,674	-		DDA3937_RS04870	0.67	+1.5
1,090,688	+		DDA3937_RS04870	0.68	+0.7
1,090,752	-		DDA3937_RS04870	0.71	+1.4
1,090,752	-		DDA3937_RS04870	0.71	-2.3
1,090,754	-		DDA3937_RS04870	0.71	+0.4
1,090,790	+		DDA3937_RS04870	0.72	+2.1
1,090,790	+		DDA3937_RS04870	0.72	-0.0
1,090,791	-		DDA3937_RS04870	0.72	+0.5
1,090,791	-		DDA3937_RS04870	0.72	-0.2
1,090,832	-		DDA3937_RS04870	0.74	-0.1
1,090,961	+		DDA3937_RS04870	0.80	-1.0
1,090,962	-		DDA3937_RS04870	0.80	-0.5
1,090,970	+		DDA3937_RS04870	0.81	-1.1
1,090,970	+		DDA3937_RS04870	0.81	+5.4
1,090,970	+		DDA3937_RS04870	0.81	+0.0
1,090,970	+		DDA3937_RS04870	0.81	+2.3
1,090,970	+		DDA3937_RS04870	0.81	+0.0
1,090,971	-		DDA3937_RS04870	0.81	+0.5
1,090,971	-		DDA3937_RS04870	0.81	+0.9
1,090,971	-		DDA3937_RS04870	0.81	-0.3
1,090,971	-		DDA3937_RS04870	0.81	-1.4
1,090,983	-		DDA3937_RS04870	0.81	-0.6
1,090,993	+		DDA3937_RS04870	0.82	+0.4
1,090,993	+		DDA3937_RS04870	0.82	+1.0
1,090,993	+				+1.2
1,090,993	+		DDA3937_RS04870	0.82	+0.4
1,090,994	-		DDA3937_RS04870	0.82	+0.0
1,090,994	-		DDA3937_RS04870	0.82	-0.8
1,090,994	-		DDA3937_RS04870	0.82	-0.7
1,091,075	-		DDA3937_RS04870	0.86	-1.1
1,091,126	+		DDA3937_RS04870	0.88	+0.3
1,091,127	-		DDA3937_RS04870	0.88	-0.6
1,091,127	-		DDA3937_RS04870	0.88	+0.6
1,091,127	-				+1.8
1,091,127	-		DDA3937_RS04870	0.88	-1.3
1,091,127	-		DDA3937_RS04870	0.88	-1.4
1,091,128	+		DDA3937_RS04870	0.88	-1.7
1,091,129	-		DDA3937_RS04870	0.88	-0.3
1,091,261	+				-0.1
1,091,262	-				+1.3
1,091,262	-				-2.0
1,091,328	-				-0.0
1,091,456	-				-1.3
1,091,458	-				+0.8
1,091,458	-				-0.9
1,091,458	-				-1.6