Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04715

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,038,265	+				-0.0
1,038,272	+				-0.3
1,038,272	+				+1.8
1,038,273	-				-0.2
1,038,273	-				-0.2
1,038,273	-				-2.0
1,038,273	-				-0.7
1,038,273	-				+0.7
1,038,274	+				+0.2
1,038,274	+				-0.5
1,038,274	+				+0.6
1,038,274	+				-0.5
1,038,274	+				-0.3
1,038,274	+				-0.4
1,038,275	-				+0.2
1,038,275	-				+0.7
1,038,278	+				-0.6
1,038,278	+				-0.9
1,038,278	+				-0.4
1,038,278	+				-0.3
1,038,278	+				-0.6
1,038,279	-				+0.3
1,038,339	-				-0.5
1,038,354	-		DDA3937_RS04710	0.11	+0.5
1,038,355	+		DDA3937_RS04710	0.12	-0.6
1,038,355	+		DDA3937_RS04710	0.12	-1.1
1,038,355	+		DDA3937_RS04710	0.12	-0.4
1,038,355	+		DDA3937_RS04710	0.12	-0.2
1,038,355	+		DDA3937_RS04710	0.12	-1.2
1,038,356	-		DDA3937_RS04710	0.12	-0.6
1,038,356	-		DDA3937_RS04710	0.12	-0.8
1,038,356	-		DDA3937_RS04710	0.12	+0.3
1,038,356	-		DDA3937_RS04710	0.12	-0.2
1,038,494	-		DDA3937_RS04710	0.29	-2.0
1,038,506	+		DDA3937_RS04710	0.31	+0.9
1,038,506	+		DDA3937_RS04710	0.31	-0.4
1,038,506	+		DDA3937_RS04710	0.31	-0.4
1,038,507	-		DDA3937_RS04710	0.31	+1.5
1,038,507	-		DDA3937_RS04710	0.31	+0.3
1,038,507	-		DDA3937_RS04710	0.31	-0.5
1,038,507	-		DDA3937_RS04710	0.31	-0.3
1,038,507	-		DDA3937_RS04710	0.31	-0.4
1,038,508	+		DDA3937_RS04710	0.31	-2.2
1,038,509	-		DDA3937_RS04710	0.31	-1.2
1,038,659	+		DDA3937_RS04710	0.50	-0.9
1,038,797	-		DDA3937_RS04710	0.68	+1.9
1,038,820	+		DDA3937_RS04710	0.71	-0.8
1,038,821	-		DDA3937_RS04710	0.71	+0.5
1,038,884	+		DDA3937_RS04710	0.79	-0.8
1,038,913	+		DDA3937_RS04710	0.83	-0.2
1,039,016	+				-0.1
1,039,016	+				-0.5
1,039,016	+				-1.4
1,039,016	+				+0.1
1,039,016	+				-0.2
1,039,017	-				-0.2
1,039,017	-				-0.2
1,039,017	-				+2.5
1,039,020	+				+0.0
1,039,020	+				-0.2
1,039,020	+				-0.7
1,039,020	+				-1.8
1,039,020	+				-0.2
1,039,021	-				-0.2
1,039,021	-				+1.2
1,039,021	-				+3.1
1,039,021	-				+1.4
1,039,021	-				-1.6
1,039,021	-				+3.5
1,039,021	-				-0.9
1,039,021	-				-1.3
1,039,021	-				+0.2
1,039,021	-				-0.3
1,039,021	-				+0.6
1,039,021	-				-0.4
1,039,022	+				-1.2
1,039,022	+				-0.1
1,039,022	+				-0.7
1,039,023	-				+0.1
1,039,023	-				+0.1
1,039,024	+				-0.9
1,039,024	+				+0.4
1,039,024	+				-0.4
1,039,025	-				+0.2
1,039,025	-				-2.3
1,039,034	+				-0.8
1,039,034	+				+0.8
1,039,034	+				-1.3
1,039,035	-				-1.3
1,039,035	-				+0.0
1,039,045	-				-1.1
1,039,045	-				+0.2
1,039,045	-				-0.7
1,039,064	+				+1.0
1,039,064	+				+1.2
1,039,089	+				+2.1
1,039,090	-				-1.0
1,039,115	-				+1.7
1,039,128	+				+0.5
1,039,129	-				+0.2
1,039,129	-				-0.4
1,039,129	-				-0.6
1,039,129	-				-0.4
1,039,131	+				+0.5
1,039,131	+				+0.8
1,039,131	+				-1.5
1,039,131	+				+0.2
1,039,131	+				-1.5
1,039,131	+				+0.6
1,039,132	-				-1.4
1,039,132	-				+0.4
1,039,132	-				+0.7
1,039,132	-				-0.6
1,039,132	-				-1.3
1,039,132	-				+0.9
1,039,133	+				+0.7
1,039,133	+				-0.2
1,039,133	+				-1.0
1,039,133	+				-0.2
1,039,134	-				+1.0
1,039,134	-				+0.7
1,039,134	-				-0.8
1,039,134	-				+0.4
1,039,134	-				-1.6
1,039,151	+				-0.2
1,039,151	+				-0.3
1,039,151	+				+0.4
1,039,151	+				+0.6
1,039,151	+				-0.3
1,039,152	-				-1.8
1,039,152	-				+0.3
1,039,152	-				-1.6
1,039,152	-				+0.0
1,039,152	-				+0.6
1,039,152	-				-2.4
1,039,255	+				-0.2
1,039,489	+		DDA3937_RS04715	0.43	-0.8
1,039,489	+		DDA3937_RS04715	0.43	+0.9
1,039,489	+		DDA3937_RS04715	0.43	+4.3
1,039,504	+		DDA3937_RS04715	0.45	-1.4
1,039,798	+		DDA3937_RS04715	0.87	-1.8
1,039,798	+		DDA3937_RS04715	0.87	-1.6
1,039,798	+		DDA3937_RS04715	0.87	+2.8
1,039,798	+		DDA3937_RS04715	0.87	+1.0
1,039,798	+		DDA3937_RS04715	0.87	-0.6
1,039,798	+		DDA3937_RS04715	0.87	-0.2
1,039,798	+		DDA3937_RS04715	0.87	+0.1
1,039,798	+		DDA3937_RS04715	0.87	+0.0
1,039,798	+		DDA3937_RS04715	0.87	-0.1
1,039,798	+		DDA3937_RS04715	0.87	-0.5
1,039,799	-		DDA3937_RS04715	0.87	+2.1
1,039,799	-		DDA3937_RS04715	0.87	-0.3
1,039,799	-		DDA3937_RS04715	0.87	-1.2
1,039,799	-		DDA3937_RS04715	0.87	+0.5
1,039,799	-		DDA3937_RS04715	0.87	-1.2
1,039,799	-		DDA3937_RS04715	0.87	-1.6
1,039,799	-		DDA3937_RS04715	0.87	+0.8
1,039,800	+		DDA3937_RS04715	0.87	+2.4
1,039,800	+		DDA3937_RS04715	0.87	+0.5
1,039,801	-		DDA3937_RS04715	0.88	-1.0
1,039,801	-		DDA3937_RS04715	0.88	-1.0
1,039,801	-		DDA3937_RS04715	0.88	-0.3
1,039,926	-				-1.3
1,039,952	+				+0.0
1,039,952	+				+0.2
1,039,958	-				-0.7
1,039,958	-				+0.2
1,040,018	+		DDA3937_RS04720	0.11	-1.0
1,040,018	+		DDA3937_RS04720	0.11	+0.2
1,040,019	-		DDA3937_RS04720	0.12	-0.5
1,040,056	+		DDA3937_RS04720	0.15	-2.4
1,040,057	-		DDA3937_RS04720	0.15	-1.1
1,040,057	-		DDA3937_RS04720	0.15	+0.6
1,040,089	-		DDA3937_RS04720	0.18	-0.4
1,040,112	+		DDA3937_RS04720	0.19	+1.2
1,040,138	+		DDA3937_RS04720	0.22	-0.3
1,040,138	+		DDA3937_RS04720	0.22	+0.3
1,040,138	+		DDA3937_RS04720	0.22	-0.8
1,040,139	-		DDA3937_RS04720	0.22	-0.7
1,040,139	-		DDA3937_RS04720	0.22	-1.3
1,040,139	-		DDA3937_RS04720	0.22	+1.4
1,040,139	-				+3.0
1,040,170	+		DDA3937_RS04720	0.24	-1.7
1,040,186	+		DDA3937_RS04720	0.26	+0.2
1,040,186	+		DDA3937_RS04720	0.26	+1.3
1,040,187	-		DDA3937_RS04720	0.26	-0.9
1,040,187	-		DDA3937_RS04720	0.26	-0.6
1,040,425	+		DDA3937_RS04720	0.46	-0.0
1,040,425	+		DDA3937_RS04720	0.46	+1.2
1,040,426	-		DDA3937_RS04720	0.46	-1.5
1,040,426	-				+0.6
1,040,426	-		DDA3937_RS04720	0.46	-0.8
1,040,675	+		DDA3937_RS04720	0.68	-0.4
1,040,675	+		DDA3937_RS04720	0.68	+1.1
1,040,681	+		DDA3937_RS04720	0.68	-0.1
1,040,681	+		DDA3937_RS04720	0.68	+0.9
1,040,682	-		DDA3937_RS04720	0.68	-0.4
1,040,707	-		DDA3937_RS04720	0.70	+2.3
1,040,707	-		DDA3937_RS04720	0.70	+0.3
1,040,740	+		DDA3937_RS04720	0.73	-0.8
1,040,740	+		DDA3937_RS04720	0.73	-0.4
1,040,740	+		DDA3937_RS04720	0.73	-0.2
1,040,741	-		DDA3937_RS04720	0.73	-1.4
1,040,741	-		DDA3937_RS04720	0.73	+0.0
1,040,741	-		DDA3937_RS04720	0.73	-0.6
1,040,744	+		DDA3937_RS04720	0.74	-2.6
1,040,744	+		DDA3937_RS04720	0.74	-0.8
1,040,744	+		DDA3937_RS04720	0.74	-0.5
1,040,744	+		DDA3937_RS04720	0.74	+1.2
1,040,744	+		DDA3937_RS04720	0.74	+0.4
1,040,744	+		DDA3937_RS04720	0.74	-0.6
1,040,745	-		DDA3937_RS04720	0.74	-1.1
1,040,745	-		DDA3937_RS04720	0.74	-0.0
1,040,745	-		DDA3937_RS04720	0.74	-0.8
1,040,745	-		DDA3937_RS04720	0.74	-0.8
1,040,745	-		DDA3937_RS04720	0.74	-1.1
1,040,745	-		DDA3937_RS04720	0.74	+1.6
1,040,745	-		DDA3937_RS04720	0.74	-3.1
1,040,760	-		DDA3937_RS04720	0.75	-0.1
1,040,882	+		DDA3937_RS04720	0.85	+1.1