Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03985 and DDA3937_RS03990 overlap by 4 nucleotides DDA3937_RS03990 and DDA3937_RS03995 are separated by 53 nucleotides
DDA3937_RS03985: DDA3937_RS03985 - conjugal transfer protein TraG, at 890,131 to 892,086
_RS03985
DDA3937_RS03990: DDA3937_RS03990 - CopG family transcriptional regulator, at 892,083 to 892,523
_RS03990
DDA3937_RS03995: DDA3937_RS03995 - P-type conjugative transfer ATPase TrbB, at 892,577 to 893,530
_RS03995
Position (kb) 892
893 Strain fitness (log2 ratio) -2
-1
0
1
2 at 891.214 kb on + strand, within DDA3937_RS03985 at 891.214 kb on + strand, within DDA3937_RS03985 at 891.215 kb on - strand, within DDA3937_RS03985 at 891.237 kb on + strand, within DDA3937_RS03985 at 891.337 kb on - strand, within DDA3937_RS03985 at 891.337 kb on - strand, within DDA3937_RS03985 at 891.547 kb on - strand, within DDA3937_RS03985 at 891.601 kb on + strand, within DDA3937_RS03985 at 891.601 kb on + strand, within DDA3937_RS03985 at 891.602 kb on - strand, within DDA3937_RS03985 at 891.763 kb on + strand, within DDA3937_RS03985 at 891.826 kb on + strand, within DDA3937_RS03985 at 891.826 kb on + strand, within DDA3937_RS03985 at 891.827 kb on - strand, within DDA3937_RS03985 at 891.827 kb on - strand, within DDA3937_RS03985 at 891.827 kb on - strand, within DDA3937_RS03985 at 891.827 kb on - strand, within DDA3937_RS03985 at 892.045 kb on - strand at 892.325 kb on + strand at 892.335 kb on + strand, within DDA3937_RS03990 at 892.335 kb on + strand, within DDA3937_RS03990 at 892.336 kb on - strand, within DDA3937_RS03990 at 892.530 kb on + strand at 892.531 kb on - strand at 892.531 kb on - strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.577 kb on - strand at 892.577 kb on - strand at 892.577 kb on - strand at 892.577 kb on - strand at 892.577 kb on - strand at 892.577 kb on - strand at 892.577 kb on - strand at 892.577 kb on - strand at 892.577 kb on - strand at 892.583 kb on + strand at 892.584 kb on - strand at 892.648 kb on + strand at 892.648 kb on + strand at 892.649 kb on - strand at 892.649 kb on - strand at 892.649 kb on - strand at 892.836 kb on + strand, within DDA3937_RS03995 at 892.837 kb on - strand, within DDA3937_RS03995 at 892.876 kb on + strand, within DDA3937_RS03995 at 892.876 kb on + strand, within DDA3937_RS03995 at 892.910 kb on + strand, within DDA3937_RS03995 at 892.910 kb on + strand, within DDA3937_RS03995 at 892.910 kb on + strand, within DDA3937_RS03995 at 893.150 kb on - strand, within DDA3937_RS03995 at 893.150 kb on - strand, within DDA3937_RS03995 at 893.388 kb on + strand, within DDA3937_RS03995 at 893.388 kb on + strand, within DDA3937_RS03995 at 893.389 kb on - strand, within DDA3937_RS03995 at 893.389 kb on - strand, within DDA3937_RS03995 at 893.389 kb on - strand, within DDA3937_RS03995 at 893.389 kb on - strand, within DDA3937_RS03995 at 893.462 kb on + strand at 893.511 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 891,214 + DDA3937_RS03985 0.55 -0.7 891,214 + DDA3937_RS03985 0.55 -2.3 891,215 - DDA3937_RS03985 0.55 -0.3 891,237 + DDA3937_RS03985 0.57 +0.4 891,337 - DDA3937_RS03985 0.62 -1.0 891,337 - DDA3937_RS03985 0.62 +0.8 891,547 - DDA3937_RS03985 0.72 -0.3 891,601 + DDA3937_RS03985 0.75 -0.1 891,601 + DDA3937_RS03985 0.75 +0.2 891,602 - DDA3937_RS03985 0.75 -0.3 891,763 + DDA3937_RS03985 0.83 -0.6 891,826 + DDA3937_RS03985 0.87 -1.1 891,826 + DDA3937_RS03985 0.87 -1.2 891,827 - DDA3937_RS03985 0.87 +2.1 891,827 - DDA3937_RS03985 0.87 -0.3 891,827 - DDA3937_RS03985 0.87 +0.3 891,827 - DDA3937_RS03985 0.87 +1.1 892,045 - +0.6 892,325 + +2.2 892,335 + DDA3937_RS03990 0.57 -0.9 892,335 + DDA3937_RS03990 0.57 -1.7 892,336 - DDA3937_RS03990 0.57 +0.2 892,530 + -1.0 892,531 - -0.5 892,531 - -0.3 892,576 + +0.5 892,576 + +1.1 892,576 + +0.6 892,576 + +0.2 892,576 + +2.0 892,576 + -0.8 892,576 + -0.1 892,576 + -0.3 892,576 + -2.6 892,576 + -0.5 892,576 + -0.2 892,576 + +1.3 892,577 - +0.9 892,577 - +1.4 892,577 - +0.1 892,577 - +0.8 892,577 - -1.3 892,577 - -2.1 892,577 - -0.5 892,577 - -1.6 892,577 - -2.0 892,583 + -0.6 892,584 - +0.0 892,648 + -1.8 892,648 + -0.9 892,649 - -1.4 892,649 - -2.1 892,649 - -0.4 892,836 + DDA3937_RS03995 0.27 -2.1 892,837 - DDA3937_RS03995 0.27 +0.2 892,876 + DDA3937_RS03995 0.31 +0.7 892,876 + DDA3937_RS03995 0.31 -1.0 892,910 + DDA3937_RS03995 0.35 +0.1 892,910 + DDA3937_RS03995 0.35 -1.6 892,910 + DDA3937_RS03995 0.35 +0.4 893,150 - DDA3937_RS03995 0.60 +0.7 893,150 - DDA3937_RS03995 0.60 +0.7 893,388 + DDA3937_RS03995 0.85 -1.5 893,388 + DDA3937_RS03995 0.85 +0.3 893,389 - DDA3937_RS03995 0.85 +0.8 893,389 - DDA3937_RS03995 0.85 -1.3 893,389 - DDA3937_RS03995 0.85 -0.1 893,389 - DDA3937_RS03995 0.85 -0.8 893,462 + +1.2 893,511 + +1.8
Or see this region's nucleotide sequence