Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03705 and DDA3937_RS03710 are separated by 56 nucleotides DDA3937_RS03710 and DDA3937_RS03715 are separated by 16 nucleotides
DDA3937_RS03705: DDA3937_RS03705 - substrate-binding domain-containing protein, at 819,439 to 820,377
_RS03705
DDA3937_RS03710: DDA3937_RS03710 - sugar ABC transporter ATP-binding protein, at 820,434 to 821,981
_RS03710
DDA3937_RS03715: DDA3937_RS03715 - ABC transporter permease, at 821,998 to 823,032
_RS03715
Position (kb) 820
821
822 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 819.528 kb on + strand at 819.528 kb on + strand at 819.529 kb on - strand at 819.534 kb on + strand, within DDA3937_RS03705 at 819.535 kb on - strand, within DDA3937_RS03705 at 819.823 kb on + strand, within DDA3937_RS03705 at 819.823 kb on + strand, within DDA3937_RS03705 at 819.823 kb on + strand, within DDA3937_RS03705 at 819.823 kb on + strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.973 kb on + strand, within DDA3937_RS03705 at 819.973 kb on + strand, within DDA3937_RS03705 at 819.974 kb on - strand, within DDA3937_RS03705 at 820.057 kb on - strand, within DDA3937_RS03705 at 820.275 kb on + strand, within DDA3937_RS03705 at 820.376 kb on - strand at 820.429 kb on - strand at 820.455 kb on - strand at 820.568 kb on + strand at 820.569 kb on - strand at 820.692 kb on + strand, within DDA3937_RS03710 at 820.692 kb on + strand, within DDA3937_RS03710 at 820.692 kb on + strand, within DDA3937_RS03710 at 820.693 kb on - strand, within DDA3937_RS03710 at 820.719 kb on - strand, within DDA3937_RS03710 at 820.719 kb on - strand, within DDA3937_RS03710 at 820.821 kb on + strand, within DDA3937_RS03710 at 820.821 kb on + strand, within DDA3937_RS03710 at 820.821 kb on + strand, within DDA3937_RS03710 at 820.821 kb on + strand, within DDA3937_RS03710 at 820.822 kb on - strand, within DDA3937_RS03710 at 820.822 kb on - strand, within DDA3937_RS03710 at 820.837 kb on + strand, within DDA3937_RS03710 at 820.837 kb on + strand, within DDA3937_RS03710 at 820.838 kb on - strand, within DDA3937_RS03710 at 820.838 kb on - strand, within DDA3937_RS03710 at 821.025 kb on + strand, within DDA3937_RS03710 at 821.025 kb on + strand, within DDA3937_RS03710 at 821.025 kb on + strand, within DDA3937_RS03710 at 821.026 kb on - strand, within DDA3937_RS03710 at 821.026 kb on - strand, within DDA3937_RS03710 at 821.026 kb on - strand, within DDA3937_RS03710 at 821.077 kb on + strand, within DDA3937_RS03710 at 821.077 kb on + strand at 821.077 kb on + strand, within DDA3937_RS03710 at 821.078 kb on - strand, within DDA3937_RS03710 at 821.094 kb on + strand, within DDA3937_RS03710 at 821.422 kb on - strand, within DDA3937_RS03710 at 821.565 kb on + strand, within DDA3937_RS03710 at 821.565 kb on + strand, within DDA3937_RS03710 at 821.566 kb on - strand, within DDA3937_RS03710 at 821.702 kb on + strand, within DDA3937_RS03710 at 821.703 kb on - strand, within DDA3937_RS03710 at 821.703 kb on - strand, within DDA3937_RS03710 at 821.703 kb on - strand, within DDA3937_RS03710 at 821.988 kb on + strand at 821.988 kb on + strand at 821.989 kb on - strand at 821.989 kb on - strand at 821.989 kb on - strand at 821.989 kb on - strand at 821.989 kb on - strand at 821.989 kb on - strand at 821.989 kb on - strand at 822.190 kb on + strand, within DDA3937_RS03715 at 822.191 kb on - strand, within DDA3937_RS03715 at 822.290 kb on - strand, within DDA3937_RS03715 at 822.621 kb on + strand, within DDA3937_RS03715 at 822.621 kb on + strand, within DDA3937_RS03715 at 822.621 kb on + strand, within DDA3937_RS03715 at 822.621 kb on + strand, within DDA3937_RS03715 at 822.622 kb on - strand, within DDA3937_RS03715 at 822.622 kb on - strand, within DDA3937_RS03715 at 822.695 kb on + strand, within DDA3937_RS03715 at 822.695 kb on + strand, within DDA3937_RS03715 at 822.695 kb on + strand, within DDA3937_RS03715 at 822.696 kb on - strand, within DDA3937_RS03715 at 822.718 kb on + strand, within DDA3937_RS03715 at 822.719 kb on - strand, within DDA3937_RS03715 at 822.719 kb on - strand, within DDA3937_RS03715 at 822.719 kb on - strand, within DDA3937_RS03715 at 822.719 kb on - strand, within DDA3937_RS03715 at 822.946 kb on + strand at 822.947 kb on - strand at 822.947 kb on - strand at 822.949 kb on + strand at 822.950 kb on - strand at 822.961 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 819,528 + -0.2 819,528 + -0.8 819,529 - -0.3 819,534 + DDA3937_RS03705 0.10 -1.1 819,535 - DDA3937_RS03705 0.10 -0.2 819,823 + DDA3937_RS03705 0.41 -3.3 819,823 + DDA3937_RS03705 0.41 -2.1 819,823 + DDA3937_RS03705 0.41 -1.0 819,823 + DDA3937_RS03705 0.41 +0.3 819,824 - DDA3937_RS03705 0.41 -0.9 819,824 - DDA3937_RS03705 0.41 -0.8 819,824 - DDA3937_RS03705 0.41 -3.0 819,824 - DDA3937_RS03705 0.41 -0.8 819,824 - DDA3937_RS03705 0.41 -2.1 819,824 - DDA3937_RS03705 0.41 -2.2 819,824 - DDA3937_RS03705 0.41 -0.5 819,973 + DDA3937_RS03705 0.57 -1.5 819,973 + DDA3937_RS03705 0.57 -1.4 819,974 - DDA3937_RS03705 0.57 -0.7 820,057 - DDA3937_RS03705 0.66 -1.4 820,275 + DDA3937_RS03705 0.89 +0.9 820,376 - -1.1 820,429 - +0.6 820,455 - -0.2 820,568 + +0.6 820,569 - -1.6 820,692 + DDA3937_RS03710 0.17 -0.0 820,692 + DDA3937_RS03710 0.17 +0.0 820,692 + DDA3937_RS03710 0.17 -0.8 820,693 - DDA3937_RS03710 0.17 +0.9 820,719 - DDA3937_RS03710 0.18 -0.1 820,719 - DDA3937_RS03710 0.18 -1.0 820,821 + DDA3937_RS03710 0.25 -0.7 820,821 + DDA3937_RS03710 0.25 +0.5 820,821 + DDA3937_RS03710 0.25 -0.3 820,821 + DDA3937_RS03710 0.25 -0.4 820,822 - DDA3937_RS03710 0.25 -1.9 820,822 - DDA3937_RS03710 0.25 -1.8 820,837 + DDA3937_RS03710 0.26 -2.2 820,837 + DDA3937_RS03710 0.26 -0.5 820,838 - DDA3937_RS03710 0.26 -0.2 820,838 - DDA3937_RS03710 0.26 -1.1 821,025 + DDA3937_RS03710 0.38 -1.8 821,025 + DDA3937_RS03710 0.38 -0.3 821,025 + DDA3937_RS03710 0.38 -2.3 821,026 - DDA3937_RS03710 0.38 -1.0 821,026 - DDA3937_RS03710 0.38 +0.4 821,026 - DDA3937_RS03710 0.38 -1.7 821,077 + DDA3937_RS03710 0.42 -1.7 821,077 + +0.3 821,077 + DDA3937_RS03710 0.42 -0.1 821,078 - DDA3937_RS03710 0.42 -0.9 821,094 + DDA3937_RS03710 0.43 -2.6 821,422 - DDA3937_RS03710 0.64 -1.0 821,565 + DDA3937_RS03710 0.73 -0.1 821,565 + DDA3937_RS03710 0.73 +2.9 821,566 - DDA3937_RS03710 0.73 -0.3 821,702 + DDA3937_RS03710 0.82 -0.3 821,703 - DDA3937_RS03710 0.82 -0.4 821,703 - DDA3937_RS03710 0.82 -0.5 821,703 - DDA3937_RS03710 0.82 -0.3 821,988 + -3.6 821,988 + -1.1 821,989 - -0.3 821,989 - -0.6 821,989 - -0.1 821,989 - -0.7 821,989 - -0.4 821,989 - +3.5 821,989 - -0.4 822,190 + DDA3937_RS03715 0.19 -0.5 822,191 - DDA3937_RS03715 0.19 -0.4 822,290 - DDA3937_RS03715 0.28 -0.2 822,621 + DDA3937_RS03715 0.60 +1.0 822,621 + DDA3937_RS03715 0.60 -2.2 822,621 + DDA3937_RS03715 0.60 -1.2 822,621 + DDA3937_RS03715 0.60 -0.7 822,622 - DDA3937_RS03715 0.60 +0.3 822,622 - DDA3937_RS03715 0.60 -2.1 822,695 + DDA3937_RS03715 0.67 +1.1 822,695 + DDA3937_RS03715 0.67 -0.7 822,695 + DDA3937_RS03715 0.67 -1.4 822,696 - DDA3937_RS03715 0.67 +1.0 822,718 + DDA3937_RS03715 0.70 -0.5 822,719 - DDA3937_RS03715 0.70 -0.2 822,719 - DDA3937_RS03715 0.70 +0.8 822,719 - DDA3937_RS03715 0.70 +0.8 822,719 - DDA3937_RS03715 0.70 +0.1 822,946 + -0.7 822,947 - -0.8 822,947 - -1.2 822,949 + +0.3 822,950 - -0.2 822,961 - -0.6
Or see this region's nucleotide sequence