Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03675 and DDA3937_RS03680 are separated by 187 nucleotides DDA3937_RS03680 and DDA3937_RS03685 are separated by 258 nucleotides
DDA3937_RS03675: DDA3937_RS03675 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing), at 811,767 to 813,698
_RS03675
DDA3937_RS03680: DDA3937_RS03680 - DNA gyrase inhibitor SbmC, at 813,886 to 814,347
_RS03680
DDA3937_RS03685: DDA3937_RS03685 - PAS domain-containing methyl-accepting chemotaxis protein, at 814,606 to 815,904
_RS03685
Position (kb) 813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 813.029 kb on - strand, within DDA3937_RS03675 at 813.029 kb on - strand, within DDA3937_RS03675 at 813.138 kb on + strand, within DDA3937_RS03675 at 813.138 kb on + strand, within DDA3937_RS03675 at 813.138 kb on + strand, within DDA3937_RS03675 at 813.138 kb on + strand, within DDA3937_RS03675 at 813.150 kb on + strand, within DDA3937_RS03675 at 813.172 kb on - strand, within DDA3937_RS03675 at 813.225 kb on + strand, within DDA3937_RS03675 at 813.226 kb on - strand, within DDA3937_RS03675 at 813.226 kb on - strand, within DDA3937_RS03675 at 813.250 kb on - strand, within DDA3937_RS03675 at 813.302 kb on - strand, within DDA3937_RS03675 at 813.465 kb on + strand, within DDA3937_RS03675 at 813.465 kb on + strand, within DDA3937_RS03675 at 813.466 kb on - strand, within DDA3937_RS03675 at 813.466 kb on - strand, within DDA3937_RS03675 at 813.558 kb on - strand at 813.693 kb on + strand at 813.693 kb on + strand at 813.693 kb on + strand at 813.693 kb on + strand at 813.693 kb on + strand at 813.694 kb on - strand at 813.694 kb on - strand at 813.696 kb on + strand at 813.696 kb on + strand at 813.696 kb on + strand at 813.697 kb on - strand at 813.759 kb on - strand at 813.789 kb on - strand at 813.789 kb on - strand at 813.797 kb on + strand at 813.797 kb on + strand at 813.797 kb on + strand at 813.798 kb on - strand at 813.798 kb on - strand at 813.799 kb on + strand at 813.900 kb on + strand at 813.900 kb on + strand at 813.900 kb on + strand at 813.900 kb on + strand at 813.900 kb on + strand at 813.901 kb on - strand at 813.901 kb on - strand at 813.906 kb on + strand at 813.906 kb on + strand at 813.942 kb on + strand, within DDA3937_RS03680 at 813.942 kb on + strand, within DDA3937_RS03680 at 813.942 kb on + strand, within DDA3937_RS03680 at 813.942 kb on + strand, within DDA3937_RS03680 at 813.943 kb on - strand, within DDA3937_RS03680 at 813.984 kb on + strand, within DDA3937_RS03680 at 813.985 kb on - strand, within DDA3937_RS03680 at 813.985 kb on - strand, within DDA3937_RS03680 at 813.997 kb on + strand, within DDA3937_RS03680 at 814.142 kb on - strand, within DDA3937_RS03680 at 814.142 kb on - strand, within DDA3937_RS03680 at 814.197 kb on - strand, within DDA3937_RS03680 at 814.340 kb on + strand at 814.341 kb on - strand at 814.341 kb on - strand at 814.341 kb on - strand at 814.347 kb on + strand at 814.347 kb on + strand at 814.347 kb on + strand at 814.358 kb on + strand at 814.377 kb on + strand at 814.377 kb on + strand at 814.381 kb on + strand at 814.381 kb on + strand at 814.382 kb on - strand at 814.390 kb on + strand at 814.391 kb on - strand at 814.393 kb on + strand at 814.394 kb on - strand at 814.394 kb on - strand at 814.395 kb on + strand at 814.395 kb on + strand at 814.395 kb on + strand at 814.395 kb on + strand at 814.396 kb on - strand at 814.396 kb on - strand at 814.396 kb on - strand at 814.396 kb on - strand at 814.396 kb on - strand at 814.396 kb on - strand at 814.396 kb on - strand at 814.397 kb on + strand at 814.397 kb on + strand at 814.397 kb on + strand at 814.397 kb on + strand at 814.397 kb on + strand at 814.397 kb on + strand at 814.397 kb on + strand at 814.397 kb on + strand at 814.397 kb on + strand at 814.398 kb on - strand at 814.398 kb on - strand at 814.398 kb on - strand at 814.398 kb on - strand at 814.398 kb on - strand at 814.398 kb on - strand at 814.516 kb on + strand at 814.533 kb on + strand at 814.537 kb on + strand at 814.538 kb on - strand at 814.572 kb on - strand at 814.583 kb on + strand at 814.624 kb on + strand at 814.624 kb on + strand at 814.625 kb on - strand at 814.666 kb on - strand at 814.719 kb on + strand at 814.719 kb on + strand at 814.719 kb on + strand at 814.764 kb on + strand, within DDA3937_RS03685 at 814.764 kb on + strand, within DDA3937_RS03685 at 814.764 kb on + strand, within DDA3937_RS03685 at 814.765 kb on - strand, within DDA3937_RS03685 at 814.776 kb on + strand, within DDA3937_RS03685 at 814.776 kb on + strand, within DDA3937_RS03685 at 814.776 kb on + strand, within DDA3937_RS03685 at 814.776 kb on + strand, within DDA3937_RS03685 at 814.777 kb on - strand, within DDA3937_RS03685 at 814.777 kb on - strand, within DDA3937_RS03685 at 814.894 kb on - strand, within DDA3937_RS03685 at 815.061 kb on + strand, within DDA3937_RS03685 at 815.169 kb on - strand, within DDA3937_RS03685 at 815.200 kb on - strand, within DDA3937_RS03685 at 815.201 kb on + strand, within DDA3937_RS03685 at 815.201 kb on + strand, within DDA3937_RS03685 at 815.201 kb on + strand, within DDA3937_RS03685 at 815.201 kb on + strand, within DDA3937_RS03685 at 815.202 kb on - strand, within DDA3937_RS03685 at 815.202 kb on - strand, within DDA3937_RS03685 at 815.241 kb on + strand, within DDA3937_RS03685 at 815.277 kb on + strand, within DDA3937_RS03685 at 815.277 kb on + strand, within DDA3937_RS03685 at 815.278 kb on - strand, within DDA3937_RS03685 at 815.278 kb on - strand, within DDA3937_RS03685 at 815.321 kb on + strand, within DDA3937_RS03685 at 815.322 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 813,029 - DDA3937_RS03675 0.65 +0.3 813,029 - DDA3937_RS03675 0.65 +0.4 813,138 + DDA3937_RS03675 0.71 -0.6 813,138 + DDA3937_RS03675 0.71 +0.1 813,138 + DDA3937_RS03675 0.71 -0.4 813,138 + DDA3937_RS03675 0.71 -1.4 813,150 + DDA3937_RS03675 0.72 +0.3 813,172 - DDA3937_RS03675 0.73 -0.1 813,225 + DDA3937_RS03675 0.75 -0.3 813,226 - DDA3937_RS03675 0.76 -0.2 813,226 - DDA3937_RS03675 0.76 -2.3 813,250 - DDA3937_RS03675 0.77 +1.5 813,302 - DDA3937_RS03675 0.79 +1.5 813,465 + DDA3937_RS03675 0.88 -0.7 813,465 + DDA3937_RS03675 0.88 -0.7 813,466 - DDA3937_RS03675 0.88 -1.5 813,466 - DDA3937_RS03675 0.88 +0.3 813,558 - +0.5 813,693 + -2.2 813,693 + +0.6 813,693 + -0.5 813,693 + +2.0 813,693 + -0.4 813,694 - +0.3 813,694 - -0.3 813,696 + -0.2 813,696 + -0.7 813,696 + +0.2 813,697 - -0.8 813,759 - +0.4 813,789 - -2.2 813,789 - +0.1 813,797 + -1.8 813,797 + -0.3 813,797 + -1.4 813,798 - -0.7 813,798 - +0.2 813,799 + -0.5 813,900 + -0.4 813,900 + -0.1 813,900 + -0.9 813,900 + -1.0 813,900 + -0.4 813,901 - +1.0 813,901 - +0.1 813,906 + +0.1 813,906 + -0.8 813,942 + DDA3937_RS03680 0.12 -0.7 813,942 + DDA3937_RS03680 0.12 -0.3 813,942 + DDA3937_RS03680 0.12 +0.4 813,942 + DDA3937_RS03680 0.12 -1.4 813,943 - DDA3937_RS03680 0.12 -0.3 813,984 + DDA3937_RS03680 0.21 -0.5 813,985 - DDA3937_RS03680 0.21 +2.1 813,985 - DDA3937_RS03680 0.21 -1.7 813,997 + DDA3937_RS03680 0.24 +0.8 814,142 - DDA3937_RS03680 0.55 +6.2 814,142 - DDA3937_RS03680 0.55 +0.3 814,197 - DDA3937_RS03680 0.67 +0.0 814,340 + +1.4 814,341 - +0.6 814,341 - -1.0 814,341 - +0.3 814,347 + +0.3 814,347 + +0.3 814,347 + +0.3 814,358 + +0.9 814,377 + +1.0 814,377 + -1.0 814,381 + -2.4 814,381 + +0.9 814,382 - -0.0 814,390 + +1.0 814,391 - -0.6 814,393 + -0.7 814,394 - -1.6 814,394 - -0.8 814,395 + -0.7 814,395 + -2.3 814,395 + +0.1 814,395 + -0.9 814,396 - -2.2 814,396 - +0.3 814,396 - -0.2 814,396 - -1.8 814,396 - -1.2 814,396 - -1.2 814,396 - +0.8 814,397 + -0.0 814,397 + -1.6 814,397 + -3.3 814,397 + +0.6 814,397 + -0.1 814,397 + +0.1 814,397 + -0.7 814,397 + +0.1 814,397 + -0.1 814,398 - +0.7 814,398 - -0.9 814,398 - +0.0 814,398 - +0.4 814,398 - -1.9 814,398 - -0.3 814,516 + +0.3 814,533 + -0.4 814,537 + +0.7 814,538 - +1.3 814,572 - -2.1 814,583 + -0.4 814,624 + +0.2 814,624 + +0.1 814,625 - +1.0 814,666 - -0.3 814,719 + -0.5 814,719 + -1.2 814,719 + -1.0 814,764 + DDA3937_RS03685 0.12 -1.6 814,764 + DDA3937_RS03685 0.12 -2.2 814,764 + DDA3937_RS03685 0.12 -0.6 814,765 - DDA3937_RS03685 0.12 -0.3 814,776 + DDA3937_RS03685 0.13 -0.8 814,776 + DDA3937_RS03685 0.13 +0.4 814,776 + DDA3937_RS03685 0.13 -0.4 814,776 + DDA3937_RS03685 0.13 +2.8 814,777 - DDA3937_RS03685 0.13 +0.2 814,777 - DDA3937_RS03685 0.13 +1.5 814,894 - DDA3937_RS03685 0.22 -0.4 815,061 + DDA3937_RS03685 0.35 -2.0 815,169 - DDA3937_RS03685 0.43 -2.3 815,200 - DDA3937_RS03685 0.46 +0.3 815,201 + DDA3937_RS03685 0.46 -0.0 815,201 + DDA3937_RS03685 0.46 -1.4 815,201 + DDA3937_RS03685 0.46 -0.1 815,201 + DDA3937_RS03685 0.46 -1.7 815,202 - DDA3937_RS03685 0.46 -0.3 815,202 - DDA3937_RS03685 0.46 -1.5 815,241 + DDA3937_RS03685 0.49 -2.1 815,277 + DDA3937_RS03685 0.52 -0.8 815,277 + DDA3937_RS03685 0.52 +0.1 815,278 - DDA3937_RS03685 0.52 -0.3 815,278 - DDA3937_RS03685 0.52 -0.1 815,321 + DDA3937_RS03685 0.55 +0.3 815,322 - -0.7
Or see this region's nucleotide sequence