Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03555 and DDA3937_RS03560 overlap by 14 nucleotides DDA3937_RS03560 and DDA3937_RS03565 overlap by 4 nucleotides DDA3937_RS03565 and DDA3937_RS03570 are separated by 317 nucleotides
DDA3937_RS03555: DDA3937_RS03555 - DHA2 family efflux MFS transporter permease subunit, at 782,551 to 784,155
_RS03555
DDA3937_RS03560: DDA3937_RS03560 - HlyD family secretion protein, at 784,142 to 785,278
_RS03560
DDA3937_RS03565: DDA3937_RS03565 - MarR family transcriptional regulator, at 785,275 to 785,730
_RS03565
DDA3937_RS03570: DDA3937_RS03570 - L,D-transpeptidase family protein, at 786,048 to 787,145
_RS03570
Position (kb) 784
785
786 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 783.181 kb on + strand, within DDA3937_RS03555 at 783.181 kb on + strand, within DDA3937_RS03555 at 783.181 kb on + strand, within DDA3937_RS03555 at 783.182 kb on - strand, within DDA3937_RS03555 at 783.182 kb on - strand, within DDA3937_RS03555 at 783.182 kb on - strand, within DDA3937_RS03555 at 783.240 kb on - strand, within DDA3937_RS03555 at 783.263 kb on - strand, within DDA3937_RS03555 at 783.271 kb on + strand, within DDA3937_RS03555 at 783.275 kb on + strand, within DDA3937_RS03555 at 783.275 kb on + strand, within DDA3937_RS03555 at 783.275 kb on + strand, within DDA3937_RS03555 at 783.275 kb on + strand, within DDA3937_RS03555 at 783.275 kb on + strand, within DDA3937_RS03555 at 783.275 kb on + strand, within DDA3937_RS03555 at 783.276 kb on - strand, within DDA3937_RS03555 at 783.276 kb on - strand, within DDA3937_RS03555 at 783.276 kb on - strand, within DDA3937_RS03555 at 783.276 kb on - strand, within DDA3937_RS03555 at 783.287 kb on + strand, within DDA3937_RS03555 at 783.288 kb on - strand, within DDA3937_RS03555 at 783.288 kb on - strand, within DDA3937_RS03555 at 783.520 kb on - strand, within DDA3937_RS03555 at 783.520 kb on - strand, within DDA3937_RS03555 at 783.717 kb on - strand, within DDA3937_RS03555 at 783.717 kb on - strand, within DDA3937_RS03555 at 783.717 kb on - strand, within DDA3937_RS03555 at 783.765 kb on + strand, within DDA3937_RS03555 at 783.765 kb on + strand, within DDA3937_RS03555 at 783.765 kb on + strand, within DDA3937_RS03555 at 783.765 kb on + strand, within DDA3937_RS03555 at 783.765 kb on + strand at 783.765 kb on + strand, within DDA3937_RS03555 at 783.766 kb on - strand, within DDA3937_RS03555 at 783.766 kb on - strand, within DDA3937_RS03555 at 783.899 kb on + strand, within DDA3937_RS03555 at 783.899 kb on + strand, within DDA3937_RS03555 at 783.899 kb on + strand, within DDA3937_RS03555 at 783.899 kb on + strand, within DDA3937_RS03555 at 783.899 kb on + strand, within DDA3937_RS03555 at 783.899 kb on + strand, within DDA3937_RS03555 at 783.899 kb on + strand, within DDA3937_RS03555 at 783.900 kb on - strand, within DDA3937_RS03555 at 783.900 kb on - strand, within DDA3937_RS03555 at 783.900 kb on - strand, within DDA3937_RS03555 at 783.900 kb on - strand, within DDA3937_RS03555 at 783.900 kb on - strand, within DDA3937_RS03555 at 783.900 kb on - strand, within DDA3937_RS03555 at 783.900 kb on - strand, within DDA3937_RS03555 at 783.900 kb on - strand, within DDA3937_RS03555 at 783.900 kb on - strand, within DDA3937_RS03555 at 783.900 kb on - strand, within DDA3937_RS03555 at 784.375 kb on + strand, within DDA3937_RS03560 at 784.376 kb on - strand, within DDA3937_RS03560 at 784.376 kb on - strand, within DDA3937_RS03560 at 784.376 kb on - strand, within DDA3937_RS03560 at 784.376 kb on - strand, within DDA3937_RS03560 at 784.376 kb on - strand at 784.379 kb on + strand, within DDA3937_RS03560 at 784.380 kb on - strand, within DDA3937_RS03560 at 784.488 kb on + strand, within DDA3937_RS03560 at 784.488 kb on + strand, within DDA3937_RS03560 at 784.488 kb on + strand, within DDA3937_RS03560 at 784.488 kb on + strand, within DDA3937_RS03560 at 784.488 kb on + strand, within DDA3937_RS03560 at 784.489 kb on - strand, within DDA3937_RS03560 at 784.489 kb on - strand, within DDA3937_RS03560 at 784.489 kb on - strand, within DDA3937_RS03560 at 784.589 kb on + strand, within DDA3937_RS03560 at 784.589 kb on + strand, within DDA3937_RS03560 at 784.730 kb on + strand, within DDA3937_RS03560 at 784.731 kb on - strand, within DDA3937_RS03560 at 784.731 kb on - strand, within DDA3937_RS03560 at 784.762 kb on + strand at 784.763 kb on - strand, within DDA3937_RS03560 at 784.810 kb on + strand, within DDA3937_RS03560 at 784.810 kb on + strand, within DDA3937_RS03560 at 784.938 kb on + strand, within DDA3937_RS03560 at 784.938 kb on + strand, within DDA3937_RS03560 at 784.938 kb on + strand, within DDA3937_RS03560 at 784.939 kb on - strand, within DDA3937_RS03560 at 785.140 kb on + strand, within DDA3937_RS03560 at 785.146 kb on + strand, within DDA3937_RS03560 at 785.147 kb on - strand, within DDA3937_RS03560 at 785.147 kb on - strand, within DDA3937_RS03560 at 785.167 kb on - strand at 785.240 kb on - strand at 785.260 kb on + strand at 785.260 kb on + strand at 785.261 kb on - strand at 785.261 kb on - strand at 785.379 kb on + strand, within DDA3937_RS03565 at 785.379 kb on + strand, within DDA3937_RS03565 at 785.380 kb on - strand, within DDA3937_RS03565 at 785.380 kb on - strand, within DDA3937_RS03565 at 785.383 kb on + strand, within DDA3937_RS03565 at 785.383 kb on + strand, within DDA3937_RS03565 at 785.383 kb on + strand, within DDA3937_RS03565 at 785.413 kb on + strand, within DDA3937_RS03565 at 785.414 kb on - strand, within DDA3937_RS03565 at 785.505 kb on + strand, within DDA3937_RS03565 at 785.613 kb on + strand, within DDA3937_RS03565 at 785.630 kb on + strand, within DDA3937_RS03565 at 785.630 kb on + strand, within DDA3937_RS03565 at 785.630 kb on + strand, within DDA3937_RS03565 at 785.748 kb on - strand at 785.784 kb on + strand at 785.846 kb on + strand at 785.846 kb on + strand at 785.846 kb on + strand at 785.889 kb on + strand at 785.890 kb on - strand at 785.890 kb on - strand at 785.894 kb on + strand at 785.894 kb on + strand at 785.894 kb on + strand at 785.895 kb on - strand at 785.897 kb on + strand at 785.897 kb on + strand at 785.897 kb on + strand at 785.898 kb on - strand at 785.898 kb on - strand at 785.909 kb on + strand at 785.910 kb on - strand at 785.961 kb on + strand at 785.961 kb on + strand at 785.962 kb on - strand at 785.962 kb on - strand at 786.009 kb on + strand at 786.009 kb on + strand at 786.009 kb on + strand at 786.010 kb on - strand at 786.010 kb on - strand at 786.034 kb on - strand at 786.196 kb on - strand, within DDA3937_RS03570 at 786.251 kb on + strand, within DDA3937_RS03570
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 783,181 + DDA3937_RS03555 0.39 -0.4 783,181 + DDA3937_RS03555 0.39 +0.8 783,181 + DDA3937_RS03555 0.39 -0.8 783,182 - DDA3937_RS03555 0.39 -1.4 783,182 - DDA3937_RS03555 0.39 -0.4 783,182 - DDA3937_RS03555 0.39 -0.6 783,240 - DDA3937_RS03555 0.43 -0.9 783,263 - DDA3937_RS03555 0.44 -0.9 783,271 + DDA3937_RS03555 0.45 -0.6 783,275 + DDA3937_RS03555 0.45 +0.4 783,275 + DDA3937_RS03555 0.45 +0.6 783,275 + DDA3937_RS03555 0.45 +0.5 783,275 + DDA3937_RS03555 0.45 -0.7 783,275 + DDA3937_RS03555 0.45 +1.8 783,275 + DDA3937_RS03555 0.45 -1.0 783,276 - DDA3937_RS03555 0.45 -0.5 783,276 - DDA3937_RS03555 0.45 -1.0 783,276 - DDA3937_RS03555 0.45 -0.8 783,276 - DDA3937_RS03555 0.45 +1.1 783,287 + DDA3937_RS03555 0.46 +0.1 783,288 - DDA3937_RS03555 0.46 -1.4 783,288 - DDA3937_RS03555 0.46 -2.2 783,520 - DDA3937_RS03555 0.60 -0.4 783,520 - DDA3937_RS03555 0.60 -1.1 783,717 - DDA3937_RS03555 0.73 +2.3 783,717 - DDA3937_RS03555 0.73 -0.3 783,717 - DDA3937_RS03555 0.73 -1.7 783,765 + DDA3937_RS03555 0.76 -1.2 783,765 + DDA3937_RS03555 0.76 +0.8 783,765 + DDA3937_RS03555 0.76 +0.6 783,765 + DDA3937_RS03555 0.76 -0.1 783,765 + +0.7 783,765 + DDA3937_RS03555 0.76 -0.4 783,766 - DDA3937_RS03555 0.76 -0.7 783,766 - DDA3937_RS03555 0.76 +0.6 783,899 + DDA3937_RS03555 0.84 -0.0 783,899 + DDA3937_RS03555 0.84 +1.1 783,899 + DDA3937_RS03555 0.84 -1.3 783,899 + DDA3937_RS03555 0.84 -1.7 783,899 + DDA3937_RS03555 0.84 -0.1 783,899 + DDA3937_RS03555 0.84 +0.1 783,899 + DDA3937_RS03555 0.84 -0.3 783,900 - DDA3937_RS03555 0.84 -0.6 783,900 - DDA3937_RS03555 0.84 -1.5 783,900 - DDA3937_RS03555 0.84 +0.0 783,900 - DDA3937_RS03555 0.84 +0.1 783,900 - DDA3937_RS03555 0.84 -0.3 783,900 - DDA3937_RS03555 0.84 -1.9 783,900 - DDA3937_RS03555 0.84 +0.4 783,900 - DDA3937_RS03555 0.84 -0.9 783,900 - DDA3937_RS03555 0.84 -0.6 783,900 - DDA3937_RS03555 0.84 -1.3 784,375 + DDA3937_RS03560 0.20 -1.3 784,376 - DDA3937_RS03560 0.21 -0.2 784,376 - DDA3937_RS03560 0.21 -1.5 784,376 - DDA3937_RS03560 0.21 +1.3 784,376 - DDA3937_RS03560 0.21 -0.3 784,376 - +0.3 784,379 + DDA3937_RS03560 0.21 -1.2 784,380 - DDA3937_RS03560 0.21 +0.4 784,488 + DDA3937_RS03560 0.30 -0.9 784,488 + DDA3937_RS03560 0.30 +6.3 784,488 + DDA3937_RS03560 0.30 -1.1 784,488 + DDA3937_RS03560 0.30 -0.3 784,488 + DDA3937_RS03560 0.30 -0.6 784,489 - DDA3937_RS03560 0.31 +0.0 784,489 - DDA3937_RS03560 0.31 +0.4 784,489 - DDA3937_RS03560 0.31 +1.8 784,589 + DDA3937_RS03560 0.39 +1.2 784,589 + DDA3937_RS03560 0.39 +0.5 784,730 + DDA3937_RS03560 0.52 -2.7 784,731 - DDA3937_RS03560 0.52 -1.7 784,731 - DDA3937_RS03560 0.52 -0.6 784,762 + -0.3 784,763 - DDA3937_RS03560 0.55 +0.4 784,810 + DDA3937_RS03560 0.59 +0.5 784,810 + DDA3937_RS03560 0.59 +1.0 784,938 + DDA3937_RS03560 0.70 -1.4 784,938 + DDA3937_RS03560 0.70 -1.9 784,938 + DDA3937_RS03560 0.70 +0.3 784,939 - DDA3937_RS03560 0.70 +0.9 785,140 + DDA3937_RS03560 0.88 +1.0 785,146 + DDA3937_RS03560 0.88 -1.3 785,147 - DDA3937_RS03560 0.88 -0.6 785,147 - DDA3937_RS03560 0.88 +0.4 785,167 - -0.1 785,240 - -1.2 785,260 + -0.6 785,260 + -2.9 785,261 - +2.3 785,261 - -0.1 785,379 + DDA3937_RS03565 0.23 -2.3 785,379 + DDA3937_RS03565 0.23 -2.0 785,380 - DDA3937_RS03565 0.23 -0.1 785,380 - DDA3937_RS03565 0.23 -1.8 785,383 + DDA3937_RS03565 0.24 +1.7 785,383 + DDA3937_RS03565 0.24 -1.2 785,383 + DDA3937_RS03565 0.24 -0.2 785,413 + DDA3937_RS03565 0.30 -1.1 785,414 - DDA3937_RS03565 0.30 -0.1 785,505 + DDA3937_RS03565 0.50 -1.0 785,613 + DDA3937_RS03565 0.74 +4.6 785,630 + DDA3937_RS03565 0.78 -1.0 785,630 + DDA3937_RS03565 0.78 -0.3 785,630 + DDA3937_RS03565 0.78 +0.7 785,748 - -0.9 785,784 + -0.2 785,846 + -0.3 785,846 + -1.8 785,846 + +0.3 785,889 + -1.0 785,890 - +4.5 785,890 - -1.3 785,894 + +0.5 785,894 + +0.3 785,894 + +0.5 785,895 - -1.0 785,897 + -0.6 785,897 + -1.2 785,897 + -0.8 785,898 - -2.3 785,898 - +0.3 785,909 + -0.5 785,910 - +0.6 785,961 + +1.1 785,961 + -0.1 785,962 - +0.6 785,962 - +0.5 786,009 + -2.3 786,009 + -1.1 786,009 + -0.9 786,010 - -0.4 786,010 - -0.9 786,034 - +0.7 786,196 - DDA3937_RS03570 0.13 +2.3 786,251 + DDA3937_RS03570 0.18 -1.1
Or see this region's nucleotide sequence