Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02820 and DDA3937_RS02825 are separated by 514 nucleotides DDA3937_RS02825 and DDA3937_RS02830 are separated by 294 nucleotides
DDA3937_RS02820: DDA3937_RS02820 - MFS transporter, at 620,052 to 621,350
_RS02820
DDA3937_RS02825: DDA3937_RS02825 - glucuronate isomerase, at 621,865 to 623,283
_RS02825
DDA3937_RS02830: DDA3937_RS02830 - tagaturonate reductase, at 623,578 to 625,029
_RS02830
Position (kb) 621
622
623
624 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 620.939 kb on - strand, within DDA3937_RS02820 at 621.118 kb on + strand, within DDA3937_RS02820 at 621.119 kb on - strand, within DDA3937_RS02820 at 621.152 kb on - strand, within DDA3937_RS02820 at 621.152 kb on - strand, within DDA3937_RS02820 at 621.152 kb on - strand, within DDA3937_RS02820 at 621.170 kb on + strand, within DDA3937_RS02820 at 621.170 kb on + strand, within DDA3937_RS02820 at 621.170 kb on + strand, within DDA3937_RS02820 at 621.178 kb on + strand, within DDA3937_RS02820 at 621.178 kb on + strand, within DDA3937_RS02820 at 621.178 kb on + strand, within DDA3937_RS02820 at 621.179 kb on - strand, within DDA3937_RS02820 at 621.190 kb on + strand, within DDA3937_RS02820 at 621.203 kb on + strand, within DDA3937_RS02820 at 621.203 kb on + strand, within DDA3937_RS02820 at 621.204 kb on - strand, within DDA3937_RS02820 at 621.204 kb on - strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand at 621.211 kb on + strand, within DDA3937_RS02820 at 621.211 kb on + strand, within DDA3937_RS02820 at 621.211 kb on + strand, within DDA3937_RS02820 at 621.211 kb on + strand, within DDA3937_RS02820 at 621.211 kb on + strand, within DDA3937_RS02820 at 621.212 kb on - strand, within DDA3937_RS02820 at 621.212 kb on - strand, within DDA3937_RS02820 at 621.212 kb on - strand, within DDA3937_RS02820 at 621.212 kb on - strand, within DDA3937_RS02820 at 621.212 kb on - strand, within DDA3937_RS02820 at 621.228 kb on - strand at 621.284 kb on - strand at 621.323 kb on - strand at 621.376 kb on - strand at 621.410 kb on - strand at 621.415 kb on + strand at 621.415 kb on + strand at 621.416 kb on - strand at 621.416 kb on - strand at 621.559 kb on + strand at 621.560 kb on - strand at 621.609 kb on + strand at 621.615 kb on - strand at 621.660 kb on + strand at 621.675 kb on + strand at 621.676 kb on - strand at 621.680 kb on + strand at 621.681 kb on - strand at 621.704 kb on + strand at 621.704 kb on + strand at 621.704 kb on + strand at 621.704 kb on + strand at 621.704 kb on + strand at 621.705 kb on - strand at 621.705 kb on - strand at 621.705 kb on - strand at 621.748 kb on + strand at 621.748 kb on + strand at 621.749 kb on - strand at 621.848 kb on - strand at 621.848 kb on - strand at 621.923 kb on - strand at 621.959 kb on - strand at 622.089 kb on + strand, within DDA3937_RS02825 at 622.146 kb on + strand, within DDA3937_RS02825 at 622.147 kb on - strand, within DDA3937_RS02825 at 622.165 kb on + strand, within DDA3937_RS02825 at 622.237 kb on - strand, within DDA3937_RS02825 at 622.462 kb on + strand, within DDA3937_RS02825 at 622.462 kb on + strand, within DDA3937_RS02825 at 622.462 kb on + strand, within DDA3937_RS02825 at 622.463 kb on - strand, within DDA3937_RS02825 at 622.463 kb on - strand, within DDA3937_RS02825 at 622.463 kb on - strand, within DDA3937_RS02825 at 622.463 kb on - strand, within DDA3937_RS02825 at 622.463 kb on - strand, within DDA3937_RS02825 at 622.463 kb on - strand, within DDA3937_RS02825 at 622.566 kb on + strand, within DDA3937_RS02825 at 622.566 kb on + strand, within DDA3937_RS02825 at 622.566 kb on + strand, within DDA3937_RS02825 at 622.566 kb on + strand, within DDA3937_RS02825 at 622.567 kb on - strand, within DDA3937_RS02825 at 622.567 kb on - strand, within DDA3937_RS02825 at 622.567 kb on - strand, within DDA3937_RS02825 at 622.750 kb on + strand, within DDA3937_RS02825 at 622.750 kb on + strand, within DDA3937_RS02825 at 622.751 kb on - strand, within DDA3937_RS02825 at 622.776 kb on + strand, within DDA3937_RS02825 at 622.777 kb on - strand, within DDA3937_RS02825 at 622.777 kb on - strand, within DDA3937_RS02825 at 622.909 kb on + strand, within DDA3937_RS02825 at 622.910 kb on - strand, within DDA3937_RS02825 at 623.119 kb on + strand, within DDA3937_RS02825 at 623.120 kb on - strand, within DDA3937_RS02825 at 623.120 kb on - strand, within DDA3937_RS02825 at 623.134 kb on + strand, within DDA3937_RS02825 at 623.134 kb on + strand, within DDA3937_RS02825 at 623.134 kb on + strand, within DDA3937_RS02825 at 623.135 kb on - strand, within DDA3937_RS02825 at 623.135 kb on - strand, within DDA3937_RS02825 at 623.135 kb on - strand, within DDA3937_RS02825 at 623.135 kb on - strand, within DDA3937_RS02825 at 623.230 kb on - strand at 623.270 kb on + strand at 623.271 kb on - strand at 623.272 kb on + strand at 623.328 kb on + strand at 623.328 kb on + strand at 623.328 kb on + strand at 623.328 kb on + strand at 623.328 kb on + strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.336 kb on + strand at 623.336 kb on + strand at 623.336 kb on + strand at 623.337 kb on - strand at 623.337 kb on - strand at 623.337 kb on - strand at 623.337 kb on - strand at 623.337 kb on - strand at 623.353 kb on + strand at 623.368 kb on + strand at 623.368 kb on + strand at 623.368 kb on + strand at 623.368 kb on + strand at 623.368 kb on + strand at 623.368 kb on + strand at 623.368 kb on + strand at 623.369 kb on - strand at 623.384 kb on + strand at 623.384 kb on + strand at 623.385 kb on - strand at 623.393 kb on + strand at 623.393 kb on + strand at 623.393 kb on + strand at 623.394 kb on - strand at 623.394 kb on - strand at 623.394 kb on - strand at 623.395 kb on + strand at 623.395 kb on + strand at 623.395 kb on + strand at 623.395 kb on + strand at 623.395 kb on + strand at 623.396 kb on - strand at 623.396 kb on - strand at 623.397 kb on + strand at 623.397 kb on + strand at 623.397 kb on + strand at 623.398 kb on - strand at 623.398 kb on - strand at 623.398 kb on - strand at 623.512 kb on + strand at 623.512 kb on + strand at 623.512 kb on + strand at 623.512 kb on + strand at 623.513 kb on - strand at 623.568 kb on + strand at 623.568 kb on + strand at 623.568 kb on + strand at 623.569 kb on - strand at 623.569 kb on - strand at 623.576 kb on + strand at 623.576 kb on + strand at 623.667 kb on + strand at 623.667 kb on + strand at 623.701 kb on - strand at 623.723 kb on + strand at 623.724 kb on - strand, within DDA3937_RS02830 at 623.782 kb on + strand, within DDA3937_RS02830 at 623.782 kb on + strand, within DDA3937_RS02830 at 623.782 kb on + strand, within DDA3937_RS02830 at 623.783 kb on - strand, within DDA3937_RS02830 at 623.783 kb on - strand, within DDA3937_RS02830 at 623.783 kb on - strand, within DDA3937_RS02830 at 623.783 kb on - strand, within DDA3937_RS02830 at 623.783 kb on - strand, within DDA3937_RS02830 at 623.783 kb on - strand, within DDA3937_RS02830 at 623.783 kb on - strand, within DDA3937_RS02830 at 623.794 kb on - strand, within DDA3937_RS02830 at 623.872 kb on + strand, within DDA3937_RS02830 at 623.873 kb on - strand, within DDA3937_RS02830 at 623.890 kb on + strand, within DDA3937_RS02830 at 623.890 kb on + strand, within DDA3937_RS02830 at 623.890 kb on + strand, within DDA3937_RS02830 at 623.891 kb on - strand, within DDA3937_RS02830 at 623.891 kb on - strand, within DDA3937_RS02830 at 623.891 kb on - strand, within DDA3937_RS02830 at 623.959 kb on + strand, within DDA3937_RS02830 at 623.959 kb on + strand, within DDA3937_RS02830 at 623.959 kb on + strand, within DDA3937_RS02830 at 623.960 kb on - strand, within DDA3937_RS02830 at 623.960 kb on - strand, within DDA3937_RS02830 at 624.049 kb on - strand, within DDA3937_RS02830 at 624.100 kb on + strand, within DDA3937_RS02830 at 624.100 kb on + strand, within DDA3937_RS02830 at 624.101 kb on - strand, within DDA3937_RS02830 at 624.101 kb on - strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.193 kb on - strand, within DDA3937_RS02830 at 624.193 kb on - strand, within DDA3937_RS02830 at 624.193 kb on - strand, within DDA3937_RS02830
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 620,939 - DDA3937_RS02820 0.68 -0.4 621,118 + DDA3937_RS02820 0.82 +0.8 621,119 - DDA3937_RS02820 0.82 +0.9 621,152 - DDA3937_RS02820 0.85 -0.4 621,152 - DDA3937_RS02820 0.85 +0.2 621,152 - DDA3937_RS02820 0.85 +1.7 621,170 + DDA3937_RS02820 0.86 -0.2 621,170 + DDA3937_RS02820 0.86 -0.8 621,170 + DDA3937_RS02820 0.86 -0.0 621,178 + DDA3937_RS02820 0.87 +0.1 621,178 + DDA3937_RS02820 0.87 -0.6 621,178 + DDA3937_RS02820 0.87 +0.8 621,179 - DDA3937_RS02820 0.87 +1.4 621,190 + DDA3937_RS02820 0.88 -0.8 621,203 + DDA3937_RS02820 0.89 -2.0 621,203 + DDA3937_RS02820 0.89 +0.2 621,204 - DDA3937_RS02820 0.89 -0.3 621,204 - DDA3937_RS02820 0.89 +0.0 621,205 + DDA3937_RS02820 0.89 +0.7 621,205 + DDA3937_RS02820 0.89 -1.0 621,205 + DDA3937_RS02820 0.89 -0.3 621,205 + DDA3937_RS02820 0.89 -2.9 621,205 + DDA3937_RS02820 0.89 -1.0 621,205 + DDA3937_RS02820 0.89 +0.7 621,205 + DDA3937_RS02820 0.89 -0.5 621,205 + DDA3937_RS02820 0.89 +0.5 621,205 + DDA3937_RS02820 0.89 -0.6 621,205 + DDA3937_RS02820 0.89 -1.2 621,205 + DDA3937_RS02820 0.89 +0.9 621,205 + DDA3937_RS02820 0.89 +0.1 621,206 - DDA3937_RS02820 0.89 -2.2 621,206 - DDA3937_RS02820 0.89 -0.5 621,206 - DDA3937_RS02820 0.89 +0.5 621,206 - DDA3937_RS02820 0.89 -1.5 621,206 - DDA3937_RS02820 0.89 +0.1 621,206 - DDA3937_RS02820 0.89 -1.1 621,206 - DDA3937_RS02820 0.89 +2.2 621,206 - DDA3937_RS02820 0.89 -0.9 621,206 - DDA3937_RS02820 0.89 -2.9 621,206 - DDA3937_RS02820 0.89 +0.5 621,206 - DDA3937_RS02820 0.89 +0.7 621,206 - DDA3937_RS02820 0.89 -0.8 621,206 - DDA3937_RS02820 0.89 +0.5 621,206 - DDA3937_RS02820 0.89 -0.2 621,206 - -1.5 621,211 + DDA3937_RS02820 0.89 -0.3 621,211 + DDA3937_RS02820 0.89 +1.8 621,211 + DDA3937_RS02820 0.89 +0.0 621,211 + DDA3937_RS02820 0.89 +1.4 621,211 + DDA3937_RS02820 0.89 +0.9 621,212 - DDA3937_RS02820 0.89 -2.4 621,212 - DDA3937_RS02820 0.89 +0.4 621,212 - DDA3937_RS02820 0.89 +1.1 621,212 - DDA3937_RS02820 0.89 -0.0 621,212 - DDA3937_RS02820 0.89 -1.8 621,228 - -1.5 621,284 - +0.1 621,323 - +1.6 621,376 - -0.1 621,410 - -0.2 621,415 + -2.3 621,415 + -0.6 621,416 - +0.4 621,416 - +0.0 621,559 + -0.8 621,560 - +0.5 621,609 + +0.2 621,615 - +1.2 621,660 + +0.9 621,675 + +1.3 621,676 - -0.0 621,680 + -0.6 621,681 - +1.3 621,704 + +0.3 621,704 + -0.0 621,704 + -0.8 621,704 + +0.1 621,704 + -0.3 621,705 - -0.8 621,705 - -0.3 621,705 - -0.2 621,748 + +1.0 621,748 + +1.3 621,749 - -1.0 621,848 - +0.3 621,848 - -1.0 621,923 - -0.5 621,959 - -0.8 622,089 + DDA3937_RS02825 0.16 -0.7 622,146 + DDA3937_RS02825 0.20 +0.1 622,147 - DDA3937_RS02825 0.20 -0.2 622,165 + DDA3937_RS02825 0.21 +2.0 622,237 - DDA3937_RS02825 0.26 +0.5 622,462 + DDA3937_RS02825 0.42 -0.3 622,462 + DDA3937_RS02825 0.42 -0.4 622,462 + DDA3937_RS02825 0.42 -0.3 622,463 - DDA3937_RS02825 0.42 -0.7 622,463 - DDA3937_RS02825 0.42 -0.8 622,463 - DDA3937_RS02825 0.42 -1.8 622,463 - DDA3937_RS02825 0.42 -0.8 622,463 - DDA3937_RS02825 0.42 +1.3 622,463 - DDA3937_RS02825 0.42 -1.5 622,566 + DDA3937_RS02825 0.49 -3.0 622,566 + DDA3937_RS02825 0.49 -0.5 622,566 + DDA3937_RS02825 0.49 +1.8 622,566 + DDA3937_RS02825 0.49 -2.0 622,567 - DDA3937_RS02825 0.49 -0.1 622,567 - DDA3937_RS02825 0.49 -0.2 622,567 - DDA3937_RS02825 0.49 +0.4 622,750 + DDA3937_RS02825 0.62 -1.2 622,750 + DDA3937_RS02825 0.62 -0.1 622,751 - DDA3937_RS02825 0.62 -0.6 622,776 + DDA3937_RS02825 0.64 -0.4 622,777 - DDA3937_RS02825 0.64 +0.2 622,777 - DDA3937_RS02825 0.64 -0.6 622,909 + DDA3937_RS02825 0.74 -1.2 622,910 - DDA3937_RS02825 0.74 -2.0 623,119 + DDA3937_RS02825 0.88 -0.7 623,120 - DDA3937_RS02825 0.88 -2.4 623,120 - DDA3937_RS02825 0.88 -1.8 623,134 + DDA3937_RS02825 0.89 +0.7 623,134 + DDA3937_RS02825 0.89 +1.4 623,134 + DDA3937_RS02825 0.89 +0.1 623,135 - DDA3937_RS02825 0.89 -1.4 623,135 - DDA3937_RS02825 0.89 -0.4 623,135 - DDA3937_RS02825 0.89 -0.5 623,135 - DDA3937_RS02825 0.89 +0.5 623,230 - -0.7 623,270 + -0.0 623,271 - -1.8 623,272 + +0.9 623,328 + +0.1 623,328 + +0.9 623,328 + +1.1 623,328 + -0.7 623,328 + +1.3 623,329 - -0.5 623,329 - -1.2 623,329 - -2.3 623,329 - +2.2 623,329 - -1.2 623,329 - -1.7 623,329 - -1.4 623,329 - -0.1 623,329 - -0.1 623,329 - -0.4 623,329 - -1.1 623,336 + +0.7 623,336 + -0.1 623,336 + +0.2 623,337 - -0.7 623,337 - -1.0 623,337 - -1.2 623,337 - -1.0 623,337 - -1.0 623,353 + +0.3 623,368 + -0.1 623,368 + +0.6 623,368 + +0.7 623,368 + -0.6 623,368 + -1.3 623,368 + +0.3 623,368 + +0.8 623,369 - -3.2 623,384 + +0.3 623,384 + -0.1 623,385 - -0.1 623,393 + -1.2 623,393 + -0.7 623,393 + +0.1 623,394 - -0.7 623,394 - -1.8 623,394 - -0.4 623,395 + +0.3 623,395 + -0.5 623,395 + -0.4 623,395 + -0.6 623,395 + +2.7 623,396 - -1.0 623,396 - -1.0 623,397 + +1.7 623,397 + +1.3 623,397 + -0.7 623,398 - -1.8 623,398 - -1.2 623,398 - -1.5 623,512 + -0.6 623,512 + -0.3 623,512 + -1.7 623,512 + -0.7 623,513 - +0.4 623,568 + -0.6 623,568 + -2.0 623,568 + -0.2 623,569 - -1.7 623,569 - -0.4 623,576 + -1.2 623,576 + -2.6 623,667 + -0.5 623,667 + -0.7 623,701 - -2.4 623,723 + +1.3 623,724 - DDA3937_RS02830 0.10 -0.7 623,782 + DDA3937_RS02830 0.14 -2.0 623,782 + DDA3937_RS02830 0.14 +1.2 623,782 + DDA3937_RS02830 0.14 -1.4 623,783 - DDA3937_RS02830 0.14 -2.1 623,783 - DDA3937_RS02830 0.14 -0.2 623,783 - DDA3937_RS02830 0.14 -0.5 623,783 - DDA3937_RS02830 0.14 -0.2 623,783 - DDA3937_RS02830 0.14 -2.8 623,783 - DDA3937_RS02830 0.14 -2.9 623,783 - DDA3937_RS02830 0.14 -3.4 623,794 - DDA3937_RS02830 0.15 -1.6 623,872 + DDA3937_RS02830 0.20 +0.0 623,873 - DDA3937_RS02830 0.20 +0.3 623,890 + DDA3937_RS02830 0.21 -1.0 623,890 + DDA3937_RS02830 0.21 -0.9 623,890 + DDA3937_RS02830 0.21 -0.2 623,891 - DDA3937_RS02830 0.22 -1.7 623,891 - DDA3937_RS02830 0.22 -2.3 623,891 - DDA3937_RS02830 0.22 -3.3 623,959 + DDA3937_RS02830 0.26 -0.7 623,959 + DDA3937_RS02830 0.26 -0.5 623,959 + DDA3937_RS02830 0.26 +1.7 623,960 - DDA3937_RS02830 0.26 -1.7 623,960 - DDA3937_RS02830 0.26 +0.3 624,049 - DDA3937_RS02830 0.32 -1.0 624,100 + DDA3937_RS02830 0.36 -0.5 624,100 + DDA3937_RS02830 0.36 +0.9 624,101 - DDA3937_RS02830 0.36 -3.2 624,101 - DDA3937_RS02830 0.36 -2.1 624,192 + DDA3937_RS02830 0.42 -0.8 624,192 + DDA3937_RS02830 0.42 -0.6 624,192 + DDA3937_RS02830 0.42 +0.1 624,192 + DDA3937_RS02830 0.42 +0.1 624,192 + DDA3937_RS02830 0.42 -1.8 624,192 + DDA3937_RS02830 0.42 -1.1 624,193 - DDA3937_RS02830 0.42 -0.5 624,193 - DDA3937_RS02830 0.42 -0.8 624,193 - DDA3937_RS02830 0.42 +1.6
Or see this region's nucleotide sequence