Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02810 and DDA3937_RS02815 are separated by 743 nucleotides DDA3937_RS02815 and DDA3937_RS02820 are separated by 368 nucleotides
DDA3937_RS02810: DDA3937_RS02810 - DedA family protein, at 617,486 to 618,160
_RS02810
DDA3937_RS02815: DDA3937_RS02815 - transcriptional regulator ExuR, at 618,904 to 619,683
_RS02815
DDA3937_RS02820: DDA3937_RS02820 - MFS transporter, at 620,052 to 621,350
_RS02820
Position (kb) 618
619
620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 617.951 kb on - strand at 617.956 kb on + strand, within DDA3937_RS02810 at 618.071 kb on + strand, within DDA3937_RS02810 at 618.071 kb on + strand, within DDA3937_RS02810 at 618.071 kb on + strand, within DDA3937_RS02810 at 618.072 kb on - strand, within DDA3937_RS02810 at 618.072 kb on - strand, within DDA3937_RS02810 at 618.072 kb on - strand, within DDA3937_RS02810 at 618.072 kb on - strand, within DDA3937_RS02810 at 618.072 kb on - strand, within DDA3937_RS02810 at 618.075 kb on + strand, within DDA3937_RS02810 at 618.075 kb on + strand, within DDA3937_RS02810 at 618.075 kb on + strand, within DDA3937_RS02810 at 618.075 kb on + strand, within DDA3937_RS02810 at 618.076 kb on - strand, within DDA3937_RS02810 at 618.076 kb on - strand, within DDA3937_RS02810 at 618.076 kb on - strand, within DDA3937_RS02810 at 618.135 kb on + strand at 618.135 kb on + strand at 618.135 kb on + strand at 618.136 kb on - strand at 618.149 kb on - strand at 618.149 kb on - strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.154 kb on + strand at 618.154 kb on + strand at 618.155 kb on - strand at 618.155 kb on - strand at 618.155 kb on - strand at 618.303 kb on - strand at 618.303 kb on - strand at 618.338 kb on + strand at 618.338 kb on + strand at 618.338 kb on + strand at 618.338 kb on + strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.341 kb on + strand at 618.341 kb on + strand at 618.341 kb on + strand at 618.356 kb on + strand at 618.356 kb on + strand at 618.357 kb on - strand at 618.361 kb on + strand at 618.361 kb on + strand at 618.361 kb on + strand at 618.361 kb on + strand at 618.361 kb on + strand at 618.386 kb on + strand at 618.480 kb on + strand at 618.551 kb on + strand at 618.616 kb on - strand at 618.618 kb on - strand at 618.713 kb on + strand at 618.718 kb on + strand at 618.718 kb on + strand at 618.773 kb on + strand at 618.773 kb on + strand at 618.774 kb on - strand at 618.774 kb on - strand at 618.787 kb on + strand at 618.788 kb on - strand at 619.134 kb on + strand, within DDA3937_RS02815 at 619.134 kb on + strand, within DDA3937_RS02815 at 619.135 kb on - strand, within DDA3937_RS02815 at 619.369 kb on + strand at 619.502 kb on + strand, within DDA3937_RS02815 at 619.572 kb on + strand, within DDA3937_RS02815 at 619.573 kb on - strand, within DDA3937_RS02815 at 619.696 kb on + strand at 619.697 kb on - strand at 619.697 kb on - strand at 619.697 kb on - strand at 619.697 kb on - strand at 619.701 kb on + strand at 619.748 kb on - strand at 619.766 kb on + strand at 619.766 kb on + strand at 619.766 kb on + strand at 619.766 kb on + strand at 619.766 kb on + strand at 619.767 kb on - strand at 619.767 kb on - strand at 619.767 kb on - strand at 619.777 kb on + strand at 619.778 kb on - strand at 619.778 kb on - strand at 619.825 kb on - strand at 619.883 kb on + strand at 619.891 kb on + strand at 619.892 kb on - strand at 619.892 kb on - strand at 619.893 kb on + strand at 619.893 kb on + strand at 619.893 kb on + strand at 619.894 kb on - strand at 619.894 kb on - strand at 619.894 kb on - strand at 619.928 kb on + strand at 619.928 kb on + strand at 619.929 kb on - strand at 619.962 kb on + strand at 619.962 kb on + strand at 619.962 kb on + strand at 619.962 kb on + strand at 619.962 kb on + strand at 619.963 kb on - strand at 619.975 kb on - strand at 620.053 kb on + strand at 620.053 kb on + strand at 620.053 kb on + strand at 620.053 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.119 kb on - strand at 620.155 kb on - strand at 620.156 kb on + strand at 620.157 kb on - strand at 620.157 kb on - strand at 620.181 kb on - strand at 620.229 kb on - strand, within DDA3937_RS02820 at 620.310 kb on - strand, within DDA3937_RS02820 at 620.373 kb on - strand, within DDA3937_RS02820 at 620.374 kb on + strand, within DDA3937_RS02820 at 620.374 kb on + strand, within DDA3937_RS02820 at 620.374 kb on + strand, within DDA3937_RS02820 at 620.473 kb on + strand, within DDA3937_RS02820 at 620.474 kb on - strand, within DDA3937_RS02820 at 620.474 kb on - strand, within DDA3937_RS02820 at 620.497 kb on + strand, within DDA3937_RS02820 at 620.497 kb on + strand, within DDA3937_RS02820 at 620.498 kb on - strand, within DDA3937_RS02820 at 620.510 kb on + strand, within DDA3937_RS02820 at 620.511 kb on - strand, within DDA3937_RS02820 at 620.618 kb on + strand, within DDA3937_RS02820
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 617,951 - -1.0 617,956 + DDA3937_RS02810 0.70 -1.0 618,071 + DDA3937_RS02810 0.87 -0.5 618,071 + DDA3937_RS02810 0.87 +0.1 618,071 + DDA3937_RS02810 0.87 +0.1 618,072 - DDA3937_RS02810 0.87 -1.5 618,072 - DDA3937_RS02810 0.87 +0.1 618,072 - DDA3937_RS02810 0.87 -1.0 618,072 - DDA3937_RS02810 0.87 +0.1 618,072 - DDA3937_RS02810 0.87 -0.1 618,075 + DDA3937_RS02810 0.87 -1.2 618,075 + DDA3937_RS02810 0.87 -1.4 618,075 + DDA3937_RS02810 0.87 -0.4 618,075 + DDA3937_RS02810 0.87 -0.3 618,076 - DDA3937_RS02810 0.87 -0.6 618,076 - DDA3937_RS02810 0.87 -1.3 618,076 - DDA3937_RS02810 0.87 -1.8 618,135 + -2.1 618,135 + -0.6 618,135 + -1.3 618,136 - -1.7 618,149 - -2.2 618,149 - -0.1 618,152 + +0.8 618,152 + -0.5 618,152 + -0.5 618,152 + -2.1 618,152 + +0.0 618,152 + -2.0 618,152 + -0.0 618,152 + -0.6 618,152 + +0.5 618,152 + -1.2 618,153 - -0.9 618,153 - -1.3 618,153 - -0.1 618,153 - -1.0 618,153 - -1.1 618,153 - -0.8 618,153 - +0.2 618,153 - +1.0 618,153 - -0.5 618,153 - -0.2 618,153 - -1.5 618,153 - -1.6 618,153 - -0.8 618,154 + -2.2 618,154 + -0.2 618,155 - -0.6 618,155 - +0.1 618,155 - +0.7 618,303 - -1.0 618,303 - -1.0 618,338 + +0.8 618,338 + -0.6 618,338 + -2.1 618,338 + -1.8 618,339 - -1.2 618,339 - +0.0 618,339 - +1.2 618,339 - -0.2 618,339 - -3.2 618,339 - -1.2 618,339 - +6.4 618,339 - -2.3 618,339 - +0.8 618,339 - -1.0 618,339 - -0.6 618,341 + -1.6 618,341 + -0.5 618,341 + +0.4 618,356 + -0.2 618,356 + -1.1 618,357 - -0.9 618,361 + -0.1 618,361 + -1.1 618,361 + +0.4 618,361 + -1.6 618,361 + -1.4 618,386 + -2.2 618,480 + +1.4 618,551 + -2.6 618,616 - -1.7 618,618 - -0.3 618,713 + -0.1 618,718 + -0.2 618,718 + -1.9 618,773 + -1.3 618,773 + -1.7 618,774 - -0.2 618,774 - +1.1 618,787 + -0.9 618,788 - -2.9 619,134 + DDA3937_RS02815 0.29 -0.1 619,134 + DDA3937_RS02815 0.29 -2.4 619,135 - DDA3937_RS02815 0.30 -0.7 619,369 + -0.2 619,502 + DDA3937_RS02815 0.77 -0.0 619,572 + DDA3937_RS02815 0.86 +1.3 619,573 - DDA3937_RS02815 0.86 -0.9 619,696 + +0.3 619,697 - -3.5 619,697 - +0.3 619,697 - +0.5 619,697 - -2.0 619,701 + -2.0 619,748 - -0.0 619,766 + -2.2 619,766 + -0.2 619,766 + +0.4 619,766 + -1.7 619,766 + -1.1 619,767 - -1.4 619,767 - +0.2 619,767 - +0.9 619,777 + -0.8 619,778 - +1.0 619,778 - -0.3 619,825 - +2.1 619,883 + -2.1 619,891 + -1.2 619,892 - +0.3 619,892 - -1.1 619,893 + +0.1 619,893 + -0.2 619,893 + -1.9 619,894 - +1.3 619,894 - -0.2 619,894 - +1.2 619,928 + +0.6 619,928 + -0.6 619,929 - -1.2 619,962 + -0.2 619,962 + -0.4 619,962 + -0.7 619,962 + +0.5 619,962 + -0.2 619,963 - +1.8 619,975 - +0.2 620,053 + +0.1 620,053 + -0.5 620,053 + +0.8 620,053 + -1.0 620,087 + +1.7 620,087 + -1.6 620,087 + +0.3 620,087 + +0.4 620,087 + +0.9 620,087 + -0.1 620,087 + +0.5 620,119 - -1.8 620,155 - -0.3 620,156 + -0.3 620,157 - -0.5 620,157 - +0.4 620,181 - -0.2 620,229 - DDA3937_RS02820 0.14 +2.0 620,310 - DDA3937_RS02820 0.20 +2.4 620,373 - DDA3937_RS02820 0.25 -1.3 620,374 + DDA3937_RS02820 0.25 +0.5 620,374 + DDA3937_RS02820 0.25 +0.1 620,374 + DDA3937_RS02820 0.25 -0.9 620,473 + DDA3937_RS02820 0.32 -0.1 620,474 - DDA3937_RS02820 0.32 +0.2 620,474 - DDA3937_RS02820 0.32 +0.2 620,497 + DDA3937_RS02820 0.34 +0.5 620,497 + DDA3937_RS02820 0.34 -0.3 620,498 - DDA3937_RS02820 0.34 -3.2 620,510 + DDA3937_RS02820 0.35 -0.0 620,511 - DDA3937_RS02820 0.35 +0.9 620,618 + DDA3937_RS02820 0.44 +0.9
Or see this region's nucleotide sequence