Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02470 and DDA3937_RS02475 are separated by 357 nucleotides DDA3937_RS02475 and DDA3937_RS21815 are separated by 105 nucleotides DDA3937_RS21815 and DDA3937_RS02480 are separated by 367 nucleotides
DDA3937_RS02470: DDA3937_RS02470 - SDR family NAD(P)-dependent oxidoreductase, at 546,299 to 547,063
_RS02470
DDA3937_RS02475: DDA3937_RS02475 - Tar ligand binding domain-containing protein, at 547,421 to 549,139
_RS02475
DDA3937_RS21815: DDA3937_RS21815 - cupin, at 549,245 to 549,349
_RS21815
DDA3937_RS02480: DDA3937_RS02480 - flagellar protein FlhE, at 549,717 to 550,139
_RS02480
Position (kb) 547
548
549
550 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 546.550 kb on + strand, within DDA3937_RS02470 at 546.746 kb on + strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.776 kb on + strand at 546.776 kb on + strand, within DDA3937_RS02470 at 546.776 kb on + strand, within DDA3937_RS02470 at 546.776 kb on + strand, within DDA3937_RS02470 at 546.777 kb on - strand, within DDA3937_RS02470 at 546.833 kb on - strand, within DDA3937_RS02470 at 546.833 kb on - strand, within DDA3937_RS02470 at 546.907 kb on + strand, within DDA3937_RS02470 at 546.908 kb on - strand, within DDA3937_RS02470 at 547.007 kb on + strand at 547.058 kb on - strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.101 kb on + strand at 547.101 kb on + strand at 547.102 kb on - strand at 547.144 kb on + strand at 547.144 kb on + strand at 547.145 kb on - strand at 547.147 kb on + strand at 547.148 kb on - strand at 547.167 kb on - strand at 547.167 kb on - strand at 547.213 kb on - strand at 547.229 kb on - strand at 547.331 kb on - strand at 547.331 kb on - strand at 547.365 kb on + strand at 547.366 kb on - strand at 547.366 kb on - strand at 547.382 kb on + strand at 547.408 kb on - strand at 547.426 kb on + strand at 547.427 kb on - strand at 547.427 kb on - strand at 547.427 kb on - strand at 547.427 kb on - strand at 547.641 kb on + strand, within DDA3937_RS02475 at 547.641 kb on + strand, within DDA3937_RS02475 at 547.641 kb on + strand, within DDA3937_RS02475 at 547.641 kb on + strand, within DDA3937_RS02475 at 547.642 kb on - strand, within DDA3937_RS02475 at 547.642 kb on - strand, within DDA3937_RS02475 at 547.642 kb on - strand, within DDA3937_RS02475 at 547.642 kb on - strand, within DDA3937_RS02475 at 547.645 kb on + strand, within DDA3937_RS02475 at 547.646 kb on - strand, within DDA3937_RS02475 at 547.717 kb on + strand, within DDA3937_RS02475 at 547.821 kb on + strand, within DDA3937_RS02475 at 547.821 kb on + strand, within DDA3937_RS02475 at 547.821 kb on + strand, within DDA3937_RS02475 at 547.821 kb on + strand, within DDA3937_RS02475 at 547.821 kb on + strand, within DDA3937_RS02475 at 547.822 kb on - strand, within DDA3937_RS02475 at 547.822 kb on - strand, within DDA3937_RS02475 at 547.832 kb on + strand, within DDA3937_RS02475 at 547.833 kb on - strand, within DDA3937_RS02475 at 547.841 kb on + strand, within DDA3937_RS02475 at 547.841 kb on + strand, within DDA3937_RS02475 at 547.842 kb on - strand, within DDA3937_RS02475 at 547.842 kb on - strand, within DDA3937_RS02475 at 547.931 kb on - strand, within DDA3937_RS02475 at 547.931 kb on - strand, within DDA3937_RS02475 at 548.086 kb on + strand, within DDA3937_RS02475 at 548.087 kb on - strand, within DDA3937_RS02475 at 548.087 kb on - strand, within DDA3937_RS02475 at 548.087 kb on - strand, within DDA3937_RS02475 at 548.087 kb on - strand, within DDA3937_RS02475 at 548.090 kb on + strand, within DDA3937_RS02475 at 548.090 kb on + strand, within DDA3937_RS02475 at 548.090 kb on + strand, within DDA3937_RS02475 at 548.090 kb on + strand, within DDA3937_RS02475 at 548.090 kb on + strand, within DDA3937_RS02475 at 548.090 kb on + strand, within DDA3937_RS02475 at 548.090 kb on + strand, within DDA3937_RS02475 at 548.091 kb on - strand, within DDA3937_RS02475 at 548.091 kb on - strand, within DDA3937_RS02475 at 548.113 kb on + strand, within DDA3937_RS02475 at 548.143 kb on + strand, within DDA3937_RS02475 at 548.143 kb on + strand, within DDA3937_RS02475 at 548.143 kb on + strand, within DDA3937_RS02475 at 548.222 kb on + strand, within DDA3937_RS02475 at 548.222 kb on + strand, within DDA3937_RS02475 at 548.268 kb on + strand, within DDA3937_RS02475 at 548.268 kb on + strand, within DDA3937_RS02475 at 548.268 kb on + strand, within DDA3937_RS02475 at 548.268 kb on + strand, within DDA3937_RS02475 at 548.268 kb on + strand, within DDA3937_RS02475 at 548.269 kb on - strand, within DDA3937_RS02475 at 548.269 kb on - strand, within DDA3937_RS02475 at 548.269 kb on - strand, within DDA3937_RS02475 at 548.269 kb on - strand, within DDA3937_RS02475 at 548.269 kb on - strand, within DDA3937_RS02475 at 548.269 kb on - strand, within DDA3937_RS02475 at 548.291 kb on + strand, within DDA3937_RS02475 at 548.291 kb on + strand, within DDA3937_RS02475 at 548.292 kb on - strand, within DDA3937_RS02475 at 548.292 kb on - strand, within DDA3937_RS02475 at 548.890 kb on + strand, within DDA3937_RS02475 at 548.896 kb on + strand, within DDA3937_RS02475 at 548.909 kb on - strand, within DDA3937_RS02475 at 549.162 kb on - strand at 549.162 kb on - strand at 549.185 kb on + strand at 549.186 kb on - strand at 549.186 kb on - strand at 549.186 kb on - strand at 549.249 kb on + strand at 549.249 kb on + strand at 549.249 kb on + strand at 549.249 kb on + strand at 549.250 kb on - strand at 549.250 kb on - strand at 549.250 kb on - strand at 549.298 kb on + strand, within DDA3937_RS21815 at 549.433 kb on + strand at 549.441 kb on - strand at 549.443 kb on + strand at 549.479 kb on + strand at 549.483 kb on + strand at 549.561 kb on + strand at 549.562 kb on - strand at 549.562 kb on - strand at 549.563 kb on + strand at 549.564 kb on - strand at 549.599 kb on - strand at 549.626 kb on + strand at 549.634 kb on + strand at 549.671 kb on + strand at 549.677 kb on + strand at 549.715 kb on - strand at 549.719 kb on - strand at 549.729 kb on + strand at 549.729 kb on + strand at 549.866 kb on + strand, within DDA3937_RS02480 at 549.866 kb on + strand, within DDA3937_RS02480 at 549.867 kb on - strand, within DDA3937_RS02480 at 549.867 kb on - strand, within DDA3937_RS02480 at 550.011 kb on - strand, within DDA3937_RS02480 at 550.018 kb on + strand, within DDA3937_RS02480 at 550.018 kb on + strand, within DDA3937_RS02480 at 550.018 kb on + strand, within DDA3937_RS02480 at 550.018 kb on + strand, within DDA3937_RS02480 at 550.048 kb on + strand, within DDA3937_RS02480 at 550.048 kb on + strand, within DDA3937_RS02480 at 550.049 kb on - strand, within DDA3937_RS02480 at 550.049 kb on - strand, within DDA3937_RS02480
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 546,550 + DDA3937_RS02470 0.33 +0.3 546,746 + DDA3937_RS02470 0.58 -0.2 546,747 - DDA3937_RS02470 0.59 -0.3 546,747 - DDA3937_RS02470 0.59 -0.2 546,747 - DDA3937_RS02470 0.59 +0.6 546,747 - DDA3937_RS02470 0.59 +0.5 546,747 - DDA3937_RS02470 0.59 -0.6 546,747 - DDA3937_RS02470 0.59 +0.8 546,747 - DDA3937_RS02470 0.59 -0.0 546,776 + +1.8 546,776 + DDA3937_RS02470 0.62 -0.5 546,776 + DDA3937_RS02470 0.62 -0.3 546,776 + DDA3937_RS02470 0.62 +0.6 546,777 - DDA3937_RS02470 0.62 -0.8 546,833 - DDA3937_RS02470 0.70 -0.7 546,833 - DDA3937_RS02470 0.70 +0.4 546,907 + DDA3937_RS02470 0.79 +1.4 546,908 - DDA3937_RS02470 0.80 +0.4 547,007 + -0.5 547,058 - -1.4 547,061 + -1.0 547,061 + +0.2 547,061 + -0.6 547,061 + +0.4 547,062 - -0.0 547,062 - -1.0 547,062 - +0.0 547,101 + -0.7 547,101 + -2.2 547,102 - -1.0 547,144 + +0.6 547,144 + +0.4 547,145 - +0.2 547,147 + -0.8 547,148 - -0.7 547,167 - -1.2 547,167 - -1.4 547,213 - -1.2 547,229 - -0.3 547,331 - -0.4 547,331 - +0.4 547,365 + +0.3 547,366 - -0.4 547,366 - -2.0 547,382 + -0.4 547,408 - -1.1 547,426 + -0.0 547,427 - +0.0 547,427 - -0.8 547,427 - -1.0 547,427 - -1.8 547,641 + DDA3937_RS02475 0.13 +0.6 547,641 + DDA3937_RS02475 0.13 -1.8 547,641 + DDA3937_RS02475 0.13 -0.1 547,641 + DDA3937_RS02475 0.13 -1.2 547,642 - DDA3937_RS02475 0.13 +0.7 547,642 - DDA3937_RS02475 0.13 -0.1 547,642 - DDA3937_RS02475 0.13 -0.2 547,642 - DDA3937_RS02475 0.13 -0.3 547,645 + DDA3937_RS02475 0.13 +0.1 547,646 - DDA3937_RS02475 0.13 +0.1 547,717 + DDA3937_RS02475 0.17 +0.5 547,821 + DDA3937_RS02475 0.23 -1.9 547,821 + DDA3937_RS02475 0.23 -0.8 547,821 + DDA3937_RS02475 0.23 -1.4 547,821 + DDA3937_RS02475 0.23 -2.5 547,821 + DDA3937_RS02475 0.23 -1.6 547,822 - DDA3937_RS02475 0.23 -0.3 547,822 - DDA3937_RS02475 0.23 -0.8 547,832 + DDA3937_RS02475 0.24 +1.0 547,833 - DDA3937_RS02475 0.24 -1.9 547,841 + DDA3937_RS02475 0.24 -0.6 547,841 + DDA3937_RS02475 0.24 +0.0 547,842 - DDA3937_RS02475 0.24 -0.8 547,842 - DDA3937_RS02475 0.24 +0.7 547,931 - DDA3937_RS02475 0.30 -2.1 547,931 - DDA3937_RS02475 0.30 -0.5 548,086 + DDA3937_RS02475 0.39 -0.8 548,087 - DDA3937_RS02475 0.39 -0.1 548,087 - DDA3937_RS02475 0.39 +0.1 548,087 - DDA3937_RS02475 0.39 -0.7 548,087 - DDA3937_RS02475 0.39 -0.2 548,090 + DDA3937_RS02475 0.39 -0.9 548,090 + DDA3937_RS02475 0.39 -0.2 548,090 + DDA3937_RS02475 0.39 -2.7 548,090 + DDA3937_RS02475 0.39 -1.1 548,090 + DDA3937_RS02475 0.39 -0.1 548,090 + DDA3937_RS02475 0.39 -0.6 548,090 + DDA3937_RS02475 0.39 -1.0 548,091 - DDA3937_RS02475 0.39 -0.6 548,091 - DDA3937_RS02475 0.39 -0.9 548,113 + DDA3937_RS02475 0.40 +4.2 548,143 + DDA3937_RS02475 0.42 -1.2 548,143 + DDA3937_RS02475 0.42 +0.1 548,143 + DDA3937_RS02475 0.42 +2.9 548,222 + DDA3937_RS02475 0.47 +0.2 548,222 + DDA3937_RS02475 0.47 -1.0 548,268 + DDA3937_RS02475 0.49 -1.1 548,268 + DDA3937_RS02475 0.49 -0.0 548,268 + DDA3937_RS02475 0.49 +0.5 548,268 + DDA3937_RS02475 0.49 +0.8 548,268 + DDA3937_RS02475 0.49 -1.2 548,269 - DDA3937_RS02475 0.49 -0.4 548,269 - DDA3937_RS02475 0.49 -0.2 548,269 - DDA3937_RS02475 0.49 +0.6 548,269 - DDA3937_RS02475 0.49 +0.9 548,269 - DDA3937_RS02475 0.49 +1.1 548,269 - DDA3937_RS02475 0.49 -0.2 548,291 + DDA3937_RS02475 0.51 -2.0 548,291 + DDA3937_RS02475 0.51 -1.2 548,292 - DDA3937_RS02475 0.51 -1.2 548,292 - DDA3937_RS02475 0.51 -0.2 548,890 + DDA3937_RS02475 0.85 -0.8 548,896 + DDA3937_RS02475 0.86 -0.3 548,909 - DDA3937_RS02475 0.87 -1.4 549,162 - -0.5 549,162 - -1.3 549,185 + -0.2 549,186 - -1.5 549,186 - -0.5 549,186 - -1.3 549,249 + -0.8 549,249 + -0.4 549,249 + +0.6 549,249 + -0.6 549,250 - +0.3 549,250 - -1.3 549,250 - -0.1 549,298 + DDA3937_RS21815 0.50 -0.7 549,433 + -0.2 549,441 - +0.4 549,443 + -0.6 549,479 + +1.2 549,483 + +0.8 549,561 + -1.2 549,562 - -1.2 549,562 - +0.0 549,563 + -0.9 549,564 - +0.0 549,599 - -0.2 549,626 + +0.8 549,634 + -0.7 549,671 + -1.2 549,677 + -1.7 549,715 - -0.0 549,719 - -0.8 549,729 + -2.1 549,729 + -0.2 549,866 + DDA3937_RS02480 0.35 +0.4 549,866 + DDA3937_RS02480 0.35 -0.8 549,867 - DDA3937_RS02480 0.35 -0.8 549,867 - DDA3937_RS02480 0.35 +3.5 550,011 - DDA3937_RS02480 0.70 +0.7 550,018 + DDA3937_RS02480 0.71 +0.4 550,018 + DDA3937_RS02480 0.71 -0.2 550,018 + DDA3937_RS02480 0.71 -0.9 550,018 + DDA3937_RS02480 0.71 -2.1 550,048 + DDA3937_RS02480 0.78 +1.0 550,048 + DDA3937_RS02480 0.78 +0.7 550,049 - DDA3937_RS02480 0.78 -2.4 550,049 - DDA3937_RS02480 0.78 +1.8
Or see this region's nucleotide sequence