Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02265 and DDA3937_RS02270 overlap by 4 nucleotides DDA3937_RS02270 and DDA3937_RS02275 are separated by 44 nucleotides DDA3937_RS02275 and DDA3937_RS02280 are separated by 183 nucleotides
DDA3937_RS02265: DDA3937_RS02265 - AAA family ATPase, at 502,871 to 503,962
_RS02265
DDA3937_RS02270: DDA3937_RS02270 - DUF4276 family protein, at 503,959 to 504,612
_RS02270
DDA3937_RS02275: DDA3937_RS02275 - Lrp/AsnC ligand binding domain-containing protein, at 504,657 to 505,160
_RS02275
DDA3937_RS02280: DDA3937_RS02280 - chorismate mutase, at 505,344 to 505,874
_RS02280
Position (kb) 504
505
506 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 503.718 kb on - strand, within DDA3937_RS02265 at 503.743 kb on - strand, within DDA3937_RS02265 at 503.773 kb on - strand, within DDA3937_RS02265 at 503.906 kb on + strand at 503.906 kb on + strand at 503.906 kb on + strand at 503.907 kb on - strand at 503.907 kb on - strand at 503.908 kb on + strand at 503.908 kb on + strand at 503.908 kb on + strand at 503.908 kb on + strand at 503.909 kb on - strand at 503.909 kb on - strand at 503.909 kb on - strand at 503.909 kb on - strand at 503.909 kb on - strand at 503.909 kb on - strand at 503.974 kb on - strand at 503.974 kb on - strand at 503.974 kb on - strand at 504.037 kb on + strand, within DDA3937_RS02270 at 504.085 kb on + strand, within DDA3937_RS02270 at 504.086 kb on - strand, within DDA3937_RS02270 at 504.087 kb on + strand, within DDA3937_RS02270 at 504.087 kb on + strand, within DDA3937_RS02270 at 504.087 kb on + strand, within DDA3937_RS02270 at 504.088 kb on - strand, within DDA3937_RS02270 at 504.088 kb on - strand, within DDA3937_RS02270 at 504.088 kb on - strand, within DDA3937_RS02270 at 504.098 kb on + strand, within DDA3937_RS02270 at 504.099 kb on - strand, within DDA3937_RS02270 at 504.099 kb on - strand, within DDA3937_RS02270 at 504.099 kb on - strand, within DDA3937_RS02270 at 504.099 kb on - strand, within DDA3937_RS02270 at 504.099 kb on - strand, within DDA3937_RS02270 at 504.106 kb on + strand, within DDA3937_RS02270 at 504.106 kb on + strand, within DDA3937_RS02270 at 504.107 kb on - strand, within DDA3937_RS02270 at 504.128 kb on + strand, within DDA3937_RS02270 at 504.129 kb on - strand, within DDA3937_RS02270 at 504.129 kb on - strand, within DDA3937_RS02270 at 504.141 kb on + strand, within DDA3937_RS02270 at 504.141 kb on + strand, within DDA3937_RS02270 at 504.142 kb on - strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand at 504.176 kb on + strand, within DDA3937_RS02270 at 504.176 kb on + strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.177 kb on - strand, within DDA3937_RS02270 at 504.181 kb on + strand, within DDA3937_RS02270 at 504.181 kb on + strand, within DDA3937_RS02270 at 504.181 kb on + strand, within DDA3937_RS02270 at 504.182 kb on - strand, within DDA3937_RS02270 at 504.182 kb on - strand, within DDA3937_RS02270 at 504.184 kb on + strand, within DDA3937_RS02270 at 504.184 kb on + strand, within DDA3937_RS02270 at 504.185 kb on - strand, within DDA3937_RS02270 at 504.185 kb on - strand, within DDA3937_RS02270 at 504.185 kb on - strand, within DDA3937_RS02270 at 504.185 kb on - strand, within DDA3937_RS02270 at 504.244 kb on + strand, within DDA3937_RS02270 at 504.244 kb on + strand at 504.276 kb on + strand, within DDA3937_RS02270 at 504.276 kb on + strand at 504.276 kb on + strand, within DDA3937_RS02270 at 504.276 kb on + strand, within DDA3937_RS02270 at 504.277 kb on - strand, within DDA3937_RS02270 at 504.277 kb on - strand, within DDA3937_RS02270 at 504.285 kb on + strand, within DDA3937_RS02270 at 504.286 kb on - strand, within DDA3937_RS02270 at 504.286 kb on - strand, within DDA3937_RS02270 at 504.328 kb on + strand, within DDA3937_RS02270 at 504.329 kb on - strand, within DDA3937_RS02270 at 504.445 kb on - strand, within DDA3937_RS02270 at 504.468 kb on + strand, within DDA3937_RS02270 at 504.468 kb on + strand, within DDA3937_RS02270 at 504.474 kb on + strand, within DDA3937_RS02270 at 504.486 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand at 504.492 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand, within DDA3937_RS02270 at 504.493 kb on - strand, within DDA3937_RS02270 at 504.493 kb on - strand, within DDA3937_RS02270 at 504.496 kb on + strand, within DDA3937_RS02270 at 504.497 kb on - strand, within DDA3937_RS02270 at 504.509 kb on + strand, within DDA3937_RS02270 at 504.510 kb on - strand, within DDA3937_RS02270 at 504.510 kb on - strand, within DDA3937_RS02270 at 504.510 kb on - strand, within DDA3937_RS02270 at 504.615 kb on + strand at 504.615 kb on + strand at 504.616 kb on - strand at 504.616 kb on - strand at 504.628 kb on - strand at 504.637 kb on - strand at 504.637 kb on - strand at 504.658 kb on + strand at 504.659 kb on - strand at 504.701 kb on + strand at 504.758 kb on + strand, within DDA3937_RS02275 at 504.758 kb on + strand, within DDA3937_RS02275 at 504.759 kb on - strand, within DDA3937_RS02275 at 504.799 kb on + strand, within DDA3937_RS02275 at 504.799 kb on + strand, within DDA3937_RS02275 at 504.799 kb on + strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.833 kb on + strand, within DDA3937_RS02275 at 504.833 kb on + strand, within DDA3937_RS02275 at 504.834 kb on - strand, within DDA3937_RS02275 at 504.834 kb on - strand, within DDA3937_RS02275 at 504.961 kb on + strand, within DDA3937_RS02275 at 504.962 kb on - strand, within DDA3937_RS02275 at 504.962 kb on - strand, within DDA3937_RS02275 at 504.962 kb on - strand at 505.005 kb on + strand, within DDA3937_RS02275 at 505.005 kb on + strand, within DDA3937_RS02275 at 505.005 kb on + strand, within DDA3937_RS02275 at 505.006 kb on - strand, within DDA3937_RS02275 at 505.078 kb on + strand, within DDA3937_RS02275 at 505.079 kb on - strand, within DDA3937_RS02275 at 505.079 kb on - strand, within DDA3937_RS02275 at 505.176 kb on - strand at 505.188 kb on + strand at 505.188 kb on + strand at 505.189 kb on - strand at 505.189 kb on - strand at 505.189 kb on - strand at 505.189 kb on - strand at 505.189 kb on - strand at 505.228 kb on - strand at 505.249 kb on + strand at 505.250 kb on - strand at 505.297 kb on - strand at 505.345 kb on + strand at 505.345 kb on + strand at 505.345 kb on + strand at 505.345 kb on + strand at 505.346 kb on - strand at 505.353 kb on + strand at 505.600 kb on + strand, within DDA3937_RS02280 at 505.754 kb on - strand, within DDA3937_RS02280 at 505.774 kb on + strand, within DDA3937_RS02280 at 505.774 kb on + strand, within DDA3937_RS02280 at 505.774 kb on + strand, within DDA3937_RS02280 at 505.775 kb on - strand, within DDA3937_RS02280 at 505.869 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.897 kb on + strand at 505.897 kb on + strand at 505.897 kb on + strand at 505.898 kb on - strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 506.033 kb on + strand at 506.131 kb on + strand at 506.131 kb on + strand at 506.132 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 503,718 - DDA3937_RS02265 0.78 -1.2 503,743 - DDA3937_RS02265 0.80 +0.3 503,773 - DDA3937_RS02265 0.83 -0.6 503,906 + -0.7 503,906 + -1.4 503,906 + -1.2 503,907 - -0.9 503,907 - -0.8 503,908 + +1.1 503,908 + -0.6 503,908 + +0.2 503,908 + -0.8 503,909 - +0.1 503,909 - -1.8 503,909 - -0.3 503,909 - -2.3 503,909 - +0.5 503,909 - -0.8 503,974 - +0.2 503,974 - -0.5 503,974 - -0.2 504,037 + DDA3937_RS02270 0.12 +0.8 504,085 + DDA3937_RS02270 0.19 -0.3 504,086 - DDA3937_RS02270 0.19 -0.2 504,087 + DDA3937_RS02270 0.20 -2.8 504,087 + DDA3937_RS02270 0.20 +0.1 504,087 + DDA3937_RS02270 0.20 -1.2 504,088 - DDA3937_RS02270 0.20 -0.7 504,088 - DDA3937_RS02270 0.20 -0.9 504,088 - DDA3937_RS02270 0.20 -0.3 504,098 + DDA3937_RS02270 0.21 -0.2 504,099 - DDA3937_RS02270 0.21 -1.6 504,099 - DDA3937_RS02270 0.21 -0.9 504,099 - DDA3937_RS02270 0.21 -0.2 504,099 - DDA3937_RS02270 0.21 -2.2 504,099 - DDA3937_RS02270 0.21 -0.5 504,106 + DDA3937_RS02270 0.22 +0.6 504,106 + DDA3937_RS02270 0.22 -0.1 504,107 - DDA3937_RS02270 0.23 -2.2 504,128 + DDA3937_RS02270 0.26 +0.6 504,129 - DDA3937_RS02270 0.26 +1.4 504,129 - DDA3937_RS02270 0.26 -0.9 504,141 + DDA3937_RS02270 0.28 +2.3 504,141 + DDA3937_RS02270 0.28 -1.6 504,142 - DDA3937_RS02270 0.28 +0.2 504,176 + DDA3937_RS02270 0.33 -0.6 504,176 + DDA3937_RS02270 0.33 -0.6 504,176 + DDA3937_RS02270 0.33 +0.6 504,176 + DDA3937_RS02270 0.33 +0.7 504,176 + DDA3937_RS02270 0.33 -0.0 504,176 + -0.6 504,176 + DDA3937_RS02270 0.33 -0.8 504,176 + DDA3937_RS02270 0.33 +1.1 504,177 - DDA3937_RS02270 0.33 -0.8 504,177 - DDA3937_RS02270 0.33 +1.6 504,177 - DDA3937_RS02270 0.33 -0.2 504,177 - DDA3937_RS02270 0.33 -1.9 504,177 - DDA3937_RS02270 0.33 +1.7 504,177 - DDA3937_RS02270 0.33 +0.3 504,177 - DDA3937_RS02270 0.33 +1.7 504,177 - DDA3937_RS02270 0.33 -0.4 504,177 - DDA3937_RS02270 0.33 -0.9 504,177 - DDA3937_RS02270 0.33 -0.8 504,181 + DDA3937_RS02270 0.34 +0.9 504,181 + DDA3937_RS02270 0.34 -2.2 504,181 + DDA3937_RS02270 0.34 -0.6 504,182 - DDA3937_RS02270 0.34 +0.5 504,182 - DDA3937_RS02270 0.34 +1.5 504,184 + DDA3937_RS02270 0.34 +0.5 504,184 + DDA3937_RS02270 0.34 +0.3 504,185 - DDA3937_RS02270 0.35 +0.4 504,185 - DDA3937_RS02270 0.35 -1.4 504,185 - DDA3937_RS02270 0.35 -1.8 504,185 - DDA3937_RS02270 0.35 -0.3 504,244 + DDA3937_RS02270 0.44 +0.2 504,244 + -1.2 504,276 + DDA3937_RS02270 0.48 +0.4 504,276 + +0.4 504,276 + DDA3937_RS02270 0.48 -0.8 504,276 + DDA3937_RS02270 0.48 -0.6 504,277 - DDA3937_RS02270 0.49 +1.0 504,277 - DDA3937_RS02270 0.49 -0.0 504,285 + DDA3937_RS02270 0.50 -1.4 504,286 - DDA3937_RS02270 0.50 -1.6 504,286 - DDA3937_RS02270 0.50 +0.2 504,328 + DDA3937_RS02270 0.56 -0.9 504,329 - DDA3937_RS02270 0.57 +3.1 504,445 - DDA3937_RS02270 0.74 +0.3 504,468 + DDA3937_RS02270 0.78 -0.2 504,468 + DDA3937_RS02270 0.78 +1.4 504,474 + DDA3937_RS02270 0.79 -0.1 504,486 + DDA3937_RS02270 0.81 -1.3 504,492 + DDA3937_RS02270 0.81 -1.6 504,492 + DDA3937_RS02270 0.81 -1.7 504,492 + -0.2 504,492 + DDA3937_RS02270 0.81 +1.5 504,492 + DDA3937_RS02270 0.81 -1.1 504,493 - DDA3937_RS02270 0.82 -0.5 504,493 - DDA3937_RS02270 0.82 +0.4 504,496 + DDA3937_RS02270 0.82 +0.4 504,497 - DDA3937_RS02270 0.82 -1.0 504,509 + DDA3937_RS02270 0.84 -0.7 504,510 - DDA3937_RS02270 0.84 +1.1 504,510 - DDA3937_RS02270 0.84 +0.9 504,510 - DDA3937_RS02270 0.84 -1.3 504,615 + -1.5 504,615 + -2.3 504,616 - +0.8 504,616 - +2.4 504,628 - -0.6 504,637 - -1.7 504,637 - -1.1 504,658 + -0.8 504,659 - +1.2 504,701 + -1.6 504,758 + DDA3937_RS02275 0.20 -1.7 504,758 + DDA3937_RS02275 0.20 -0.9 504,759 - DDA3937_RS02275 0.20 -2.1 504,799 + DDA3937_RS02275 0.28 +1.4 504,799 + DDA3937_RS02275 0.28 -0.9 504,799 + DDA3937_RS02275 0.28 +1.0 504,800 - DDA3937_RS02275 0.28 -1.1 504,800 - DDA3937_RS02275 0.28 +0.6 504,800 - DDA3937_RS02275 0.28 -0.7 504,800 - DDA3937_RS02275 0.28 -0.4 504,800 - DDA3937_RS02275 0.28 +0.3 504,833 + DDA3937_RS02275 0.35 +0.1 504,833 + DDA3937_RS02275 0.35 -0.6 504,834 - DDA3937_RS02275 0.35 +10.7 504,834 - DDA3937_RS02275 0.35 +3.9 504,961 + DDA3937_RS02275 0.60 +1.0 504,962 - DDA3937_RS02275 0.61 +0.3 504,962 - DDA3937_RS02275 0.61 -0.6 504,962 - -0.6 505,005 + DDA3937_RS02275 0.69 +0.1 505,005 + DDA3937_RS02275 0.69 -0.4 505,005 + DDA3937_RS02275 0.69 +0.6 505,006 - DDA3937_RS02275 0.69 -0.6 505,078 + DDA3937_RS02275 0.84 -2.6 505,079 - DDA3937_RS02275 0.84 +0.4 505,079 - DDA3937_RS02275 0.84 -0.2 505,176 - -0.1 505,188 + -1.1 505,188 + -2.0 505,189 - +0.4 505,189 - +0.6 505,189 - -2.4 505,189 - -1.2 505,189 - +1.2 505,228 - +1.4 505,249 + -2.2 505,250 - +0.6 505,297 - -0.1 505,345 + +0.5 505,345 + -0.6 505,345 + -0.6 505,345 + -0.6 505,346 - +0.3 505,353 + -0.8 505,600 + DDA3937_RS02280 0.48 -2.3 505,754 - DDA3937_RS02280 0.77 +1.4 505,774 + DDA3937_RS02280 0.81 -0.5 505,774 + DDA3937_RS02280 0.81 -0.8 505,774 + DDA3937_RS02280 0.81 -0.3 505,775 - DDA3937_RS02280 0.81 -1.4 505,869 + +0.2 505,874 + -0.4 505,874 + -0.1 505,874 + -0.6 505,874 + +0.4 505,874 + +1.8 505,874 + -0.2 505,874 + -1.4 505,874 + -0.4 505,874 + -1.0 505,875 - +0.2 505,875 - +0.6 505,875 - -0.1 505,875 - -0.6 505,875 - -0.8 505,875 - -1.8 505,875 - +0.3 505,897 + +2.0 505,897 + +1.0 505,897 + +0.7 505,898 - -0.2 505,972 + -0.4 505,972 + +0.8 505,972 + +0.7 505,972 + -1.2 505,972 + -2.6 505,972 + +0.4 505,972 + -0.0 505,973 - -0.9 505,973 - -0.6 505,973 - +0.3 505,973 - +0.5 505,973 - -0.7 505,973 - -1.2 505,973 - +4.1 505,973 - +1.2 505,973 - -0.9 505,973 - -0.9 506,033 + +0.1 506,131 + -1.0 506,131 + +0.2 506,132 - +0.1
Or see this region's nucleotide sequence