Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02255 and DDA3937_RS02260 are separated by 242 nucleotides DDA3937_RS02260 and DDA3937_RS21795 are separated by 230 nucleotides DDA3937_RS21795 and DDA3937_RS02265 are separated by 170 nucleotides
DDA3937_RS02255: DDA3937_RS02255 - LysR family transcriptional regulator, at 500,096 to 501,028
_RS02255
DDA3937_RS02260: DDA3937_RS02260 - 1-aminocyclopropane-1-carboxylate deaminase, at 501,271 to 502,287
_RS02260
DDA3937_RS21795: DDA3937_RS21795 - CopG family transcriptional regulator, at 502,518 to 502,700
_RS21795
DDA3937_RS02265: DDA3937_RS02265 - AAA family ATPase, at 502,871 to 503,962
_RS02265
Position (kb) 501
502
503 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 500.462 kb on + strand, within DDA3937_RS02255 at 500.463 kb on - strand, within DDA3937_RS02255 at 500.499 kb on + strand, within DDA3937_RS02255 at 500.500 kb on - strand, within DDA3937_RS02255 at 500.500 kb on - strand, within DDA3937_RS02255 at 500.667 kb on + strand, within DDA3937_RS02255 at 500.774 kb on + strand, within DDA3937_RS02255 at 500.774 kb on + strand, within DDA3937_RS02255 at 500.774 kb on + strand, within DDA3937_RS02255 at 500.774 kb on + strand, within DDA3937_RS02255 at 500.774 kb on + strand, within DDA3937_RS02255 at 500.775 kb on - strand, within DDA3937_RS02255 at 500.780 kb on + strand, within DDA3937_RS02255 at 500.780 kb on + strand, within DDA3937_RS02255 at 500.780 kb on + strand, within DDA3937_RS02255 at 500.780 kb on + strand, within DDA3937_RS02255 at 500.780 kb on + strand, within DDA3937_RS02255 at 500.780 kb on + strand, within DDA3937_RS02255 at 500.780 kb on + strand, within DDA3937_RS02255 at 500.781 kb on - strand, within DDA3937_RS02255 at 500.781 kb on - strand, within DDA3937_RS02255 at 500.781 kb on - strand, within DDA3937_RS02255 at 500.781 kb on - strand, within DDA3937_RS02255 at 500.791 kb on + strand, within DDA3937_RS02255 at 500.896 kb on + strand, within DDA3937_RS02255 at 500.896 kb on + strand, within DDA3937_RS02255 at 500.896 kb on + strand, within DDA3937_RS02255 at 500.896 kb on + strand, within DDA3937_RS02255 at 500.896 kb on + strand, within DDA3937_RS02255 at 500.985 kb on - strand at 500.985 kb on - strand at 501.183 kb on + strand at 501.184 kb on - strand at 501.296 kb on - strand at 501.302 kb on + strand at 501.350 kb on - strand at 501.374 kb on - strand, within DDA3937_RS02260 at 501.439 kb on + strand, within DDA3937_RS02260 at 501.439 kb on + strand, within DDA3937_RS02260 at 501.440 kb on - strand, within DDA3937_RS02260 at 501.440 kb on - strand, within DDA3937_RS02260 at 501.556 kb on - strand, within DDA3937_RS02260 at 501.633 kb on + strand, within DDA3937_RS02260 at 501.633 kb on + strand, within DDA3937_RS02260 at 501.844 kb on + strand, within DDA3937_RS02260 at 501.844 kb on + strand, within DDA3937_RS02260 at 501.845 kb on - strand, within DDA3937_RS02260 at 501.977 kb on + strand, within DDA3937_RS02260 at 501.978 kb on - strand, within DDA3937_RS02260 at 501.978 kb on - strand, within DDA3937_RS02260 at 502.150 kb on + strand, within DDA3937_RS02260 at 502.173 kb on + strand, within DDA3937_RS02260 at 502.174 kb on - strand, within DDA3937_RS02260 at 502.174 kb on - strand at 502.174 kb on - strand, within DDA3937_RS02260 at 502.225 kb on + strand at 502.225 kb on + strand at 502.225 kb on + strand at 502.225 kb on + strand at 502.254 kb on - strand at 502.261 kb on + strand at 502.261 kb on + strand at 502.261 kb on + strand at 502.267 kb on + strand at 502.267 kb on + strand at 502.268 kb on - strand at 502.268 kb on - strand at 502.269 kb on + strand at 502.270 kb on - strand at 502.270 kb on - strand at 502.270 kb on - strand at 502.270 kb on - strand at 502.294 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.316 kb on + strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.317 kb on - strand at 502.329 kb on - strand at 502.360 kb on + strand at 502.360 kb on + strand at 502.360 kb on + strand at 502.361 kb on - strand at 502.361 kb on - strand at 502.361 kb on - strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.385 kb on - strand at 502.385 kb on - strand at 502.385 kb on - strand at 502.385 kb on - strand at 502.398 kb on - strand at 502.398 kb on - strand at 502.398 kb on - strand at 502.398 kb on - strand at 502.450 kb on + strand at 502.450 kb on + strand at 502.450 kb on + strand at 502.463 kb on + strand at 502.482 kb on - strand at 502.487 kb on + strand at 502.487 kb on + strand at 502.487 kb on + strand at 502.487 kb on + strand at 502.487 kb on + strand at 502.488 kb on - strand at 502.489 kb on + strand at 502.489 kb on + strand at 502.489 kb on + strand at 502.489 kb on + strand at 502.489 kb on + strand at 502.489 kb on + strand at 502.490 kb on - strand at 502.490 kb on - strand at 502.490 kb on - strand at 502.490 kb on - strand at 502.490 kb on - strand at 502.532 kb on + strand at 502.532 kb on + strand at 502.536 kb on - strand at 502.586 kb on + strand, within DDA3937_RS21795 at 502.587 kb on - strand, within DDA3937_RS21795 at 502.587 kb on - strand, within DDA3937_RS21795 at 502.587 kb on - strand at 502.704 kb on - strand at 502.810 kb on + strand at 502.810 kb on + strand at 502.810 kb on + strand at 502.810 kb on + strand at 502.810 kb on + strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.811 kb on - strand at 502.814 kb on + strand at 502.815 kb on - strand at 502.815 kb on - strand at 502.994 kb on - strand, within DDA3937_RS02265 at 503.156 kb on - strand, within DDA3937_RS02265
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 500,462 + DDA3937_RS02255 0.39 -0.4 500,463 - DDA3937_RS02255 0.39 +0.1 500,499 + DDA3937_RS02255 0.43 +0.1 500,500 - DDA3937_RS02255 0.43 -0.9 500,500 - DDA3937_RS02255 0.43 -2.2 500,667 + DDA3937_RS02255 0.61 -0.2 500,774 + DDA3937_RS02255 0.73 +1.0 500,774 + DDA3937_RS02255 0.73 -2.1 500,774 + DDA3937_RS02255 0.73 -1.6 500,774 + DDA3937_RS02255 0.73 -0.7 500,774 + DDA3937_RS02255 0.73 +1.2 500,775 - DDA3937_RS02255 0.73 -0.8 500,780 + DDA3937_RS02255 0.73 -0.2 500,780 + DDA3937_RS02255 0.73 -0.7 500,780 + DDA3937_RS02255 0.73 -1.4 500,780 + DDA3937_RS02255 0.73 -0.8 500,780 + DDA3937_RS02255 0.73 -0.5 500,780 + DDA3937_RS02255 0.73 +0.7 500,780 + DDA3937_RS02255 0.73 +0.0 500,781 - DDA3937_RS02255 0.73 +0.4 500,781 - DDA3937_RS02255 0.73 -1.8 500,781 - DDA3937_RS02255 0.73 -0.4 500,781 - DDA3937_RS02255 0.73 -1.6 500,791 + DDA3937_RS02255 0.74 +0.6 500,896 + DDA3937_RS02255 0.86 -1.4 500,896 + DDA3937_RS02255 0.86 -0.3 500,896 + DDA3937_RS02255 0.86 +0.4 500,896 + DDA3937_RS02255 0.86 +1.0 500,896 + DDA3937_RS02255 0.86 -0.3 500,985 - +0.3 500,985 - -1.8 501,183 + -2.2 501,184 - -0.5 501,296 - -2.1 501,302 + -0.1 501,350 - +1.0 501,374 - DDA3937_RS02260 0.10 -0.7 501,439 + DDA3937_RS02260 0.17 +0.1 501,439 + DDA3937_RS02260 0.17 -0.6 501,440 - DDA3937_RS02260 0.17 -1.2 501,440 - DDA3937_RS02260 0.17 +0.2 501,556 - DDA3937_RS02260 0.28 +3.0 501,633 + DDA3937_RS02260 0.36 -0.7 501,633 + DDA3937_RS02260 0.36 +0.0 501,844 + DDA3937_RS02260 0.56 -0.4 501,844 + DDA3937_RS02260 0.56 -0.9 501,845 - DDA3937_RS02260 0.56 -0.0 501,977 + DDA3937_RS02260 0.69 +0.5 501,978 - DDA3937_RS02260 0.70 -2.5 501,978 - DDA3937_RS02260 0.70 +1.2 502,150 + DDA3937_RS02260 0.86 +0.4 502,173 + DDA3937_RS02260 0.89 -1.4 502,174 - DDA3937_RS02260 0.89 +1.4 502,174 - -1.4 502,174 - DDA3937_RS02260 0.89 -0.3 502,225 + -0.3 502,225 + +0.4 502,225 + +0.5 502,225 + -1.8 502,254 - -0.4 502,261 + -0.1 502,261 + +0.5 502,261 + -0.2 502,267 + -0.8 502,267 + -0.2 502,268 - +0.7 502,268 - -1.5 502,269 + -0.6 502,270 - -1.1 502,270 - -0.9 502,270 - -0.4 502,270 - -0.7 502,294 + +1.6 502,316 + -0.2 502,316 + -1.0 502,316 + +0.1 502,316 + +1.0 502,316 + +0.9 502,316 + -0.3 502,316 + +0.4 502,316 + +1.1 502,316 + -0.0 502,316 + +0.2 502,316 + -0.1 502,316 + +0.1 502,317 - +0.8 502,317 - +0.1 502,317 - -0.2 502,317 - +0.8 502,317 - -2.0 502,317 - -2.2 502,317 - +0.6 502,317 - -0.9 502,317 - -1.2 502,317 - -0.2 502,329 - +0.3 502,360 + -1.2 502,360 + +1.1 502,360 + -1.3 502,361 - +0.7 502,361 - +0.4 502,361 - +1.4 502,374 + +0.9 502,374 + -0.7 502,374 + -0.6 502,385 - +0.5 502,385 - -0.0 502,385 - -0.6 502,385 - -1.4 502,398 - -0.5 502,398 - -0.6 502,398 - -0.0 502,398 - -1.2 502,450 + -0.6 502,450 + +0.3 502,450 + -1.1 502,463 + -0.2 502,482 - -1.0 502,487 + -1.8 502,487 + -0.8 502,487 + -0.3 502,487 + +0.1 502,487 + -0.9 502,488 - -0.2 502,489 + +1.7 502,489 + -1.4 502,489 + +0.7 502,489 + +0.6 502,489 + -0.5 502,489 + +0.5 502,490 - -0.4 502,490 - +0.2 502,490 - -1.8 502,490 - +2.3 502,490 - +0.2 502,532 + -1.2 502,532 + -0.1 502,536 - +1.1 502,586 + DDA3937_RS21795 0.37 -0.1 502,587 - DDA3937_RS21795 0.38 -1.3 502,587 - DDA3937_RS21795 0.38 -0.3 502,587 - +0.4 502,704 - -0.8 502,810 + -0.9 502,810 + -2.3 502,810 + +0.4 502,810 + -0.7 502,810 + -2.2 502,811 - -0.2 502,811 - +0.5 502,811 - -0.5 502,811 - -0.2 502,811 - -0.8 502,811 - -0.3 502,811 - -0.4 502,814 + -0.3 502,815 - -0.9 502,815 - -1.5 502,994 - DDA3937_RS02265 0.11 -1.6 503,156 - DDA3937_RS02265 0.26 +1.7
Or see this region's nucleotide sequence